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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 249, 1125 |
| Acc36I | ACCTGC | 1 cut(s) | 689 |
| Acc65I | GGTACC | 1 cut(s) | 1934 |
| AccB1I | GGYRCC | 1 cut(s) | 1934 |
| AccI | GTMKAC | 2 cut(s) | 428, 520 |
| AclWI | GGATC | 5 cut(s) | 584, 1340, 1519, 1532, 1665 |
| AcoI | YGGCCR | 2 cut(s) | 634, 1617 |
| AcsI | RAATTY | 1 cut(s) | 1000 |
| AcuI | CTGAAG | 4 cut(s) | 104, 701, 758, 1734 |
| AfaI | GTAC | 3 cut(s) | 796, 1587, 1936 |
| AfeI | AGCGCT | 1 cut(s) | 530 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 752, 862, 1045, 1649, 1848 |
| AjnI | CCWGG | 5 cut(s) | 551, 631, 1018, 1114, 1714 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 18, 50, 1645, 1677 |
| AleI | CACNNNNGTG | 2 cut(s) | 339, 602 |
| Alw21I | GWGCWC | 3 cut(s) | 679, 972, 2084 |
| Alw26I | GTCTC | 1 cut(s) | 481 |
| Alw44I | GTGCAC | 1 cut(s) | 675 |
| AlwI | GGATC | 5 cut(s) | 584, 1340, 1519, 1532, 1665 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 978, 1142 |
| Aor51HI | AGCGCT | 1 cut(s) | 530 |
| AoxI | GGCC | 5 cut(s) | 634, 754, 928, 1617, 1721 |
| ApaLI | GTGCAC | 1 cut(s) | 675 |
| ApoI | RAATTY | 1 cut(s) | 1000 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1148, 1180 |
| Asp718I | GGTACC | 1 cut(s) | 1934 |
| AspLEI | GCGC | 1 cut(s) | 531 |
| AspS9I | GGNCC | 6 cut(s) | 372, 903, 928, 1036, 1093, 1786 |
| AsuHPI | GGTGA | 1 cut(s) | 253 |
| AvaII | GGWCC | 5 cut(s) | 372, 903, 1036, 1093, 1786 |
| AxyI | CCTNAGG | 2 cut(s) | 1575, 1863 |
| BaeGI | GKGCMC | 2 cut(s) | 679, 1830 |
| BalI | TGGCCA | 2 cut(s) | 636, 1619 |
| BamHI | GGATCC | 1 cut(s) | 1524 |
| BanI | GGYRCC | 1 cut(s) | 1934 |
| BbsI | GAAGAC | 2 cut(s) | 306, 2136 |
| Bbv12I | GWGCWC | 3 cut(s) | 679, 972, 2084 |
| BccI | CCATC | 7 cut(s) | 679, 719, 884, 1327, 1503, 1559, 1643 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciT130I | CCWGG | 5 cut(s) | 553, 633, 1020, 1116, 1716 |
| BclI | TGATCA | 2 cut(s) | 312, 400 |
| BcoDI | GTCTC | 1 cut(s) | 481 |
| BfaI | CTAG | 8 cut(s) | 353, 440, 722, 857, 1167, 1464, 1892, 2109 |
| BfmI | CTRYAG | 1 cut(s) | 429 |
| BfoI | RGCGCY | 1 cut(s) | 532 |
| BfuAI | ACCTGC | 1 cut(s) | 689 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1720 |
| BmcAI | AGTACT | 1 cut(s) | 796 |
| Bme1390I | CCNGG | 5 cut(s) | 553, 633, 1020, 1116, 1716 |
| Bme18I | GGWCC | 5 cut(s) | 372, 903, 1036, 1093, 1786 |
| BmgT120I | GGNCC | 6 cut(s) | 372, 903, 928, 1036, 1093, 1786 |
| BmiI | GGNNCC | 7 cut(s) | 116, 374, 854, 1113, 1526, 1787, 1936 |
| BmrFI | CCNGG | 5 cut(s) | 553, 633, 1020, 1116, 1716 |
| BmsI | GCATC | 6 cut(s) | 155, 279, 772, 1669, 1735, 2005 |
| BpiI | GAAGAC | 2 cut(s) | 306, 2136 |
| BpmI | CTGGAG | 1 cut(s) | 1397 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1929, 1967 |
| BpuEI | CTTGAG | 1 cut(s) | 545 |
| BsaJI | CCNNGG | 5 cut(s) | 552, 631, 1019, 1083, 1115 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 194, 224, 815, 845, 1480, 1510 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 752, 862, 1045, 1649, 1848 |
| Bse1I | ACTGG | 4 cut(s) | 644, 1166, 1380, 1604 |
| Bse21I | CCTNAGG | 2 cut(s) | 1575, 1863 |
| Bse3DI | GCAATG | 2 cut(s) | 822, 2055 |
| BseBI | CCWGG | 5 cut(s) | 553, 633, 1020, 1116, 1716 |
| BseDI | CCNNGG | 5 cut(s) | 552, 631, 1019, 1083, 1115 |
| BseGI | GGATG | 5 cut(s) | 663, 787, 1551, 1750, 2020 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 752, 862, 1045, 1649, 1848 |
| BseMI | GCAATG | 2 cut(s) | 822, 2055 |
| BseMII | CTCAG | 6 cut(s) | 66, 152, 1231, 1566, 1712, 1755 |
| BseNI | ACTGG | 4 cut(s) | 644, 1166, 1380, 1604 |
| BseRI | GAGGAG | 5 cut(s) | 1473, 1501, 1504, 1686, 1938 |
| BseSI | GKGCMC | 2 cut(s) | 679, 1830 |
| BseYI | CCCAGC | 1 cut(s) | 896 |
| BsgI | GTGCAG | 3 cut(s) | 485, 984, 1825 |
| BshFI | GGCC | 5 cut(s) | 636, 756, 930, 1619, 1723 |
| BshNI | GGYRCC | 1 cut(s) | 1934 |
| BsiHKAI | GWGCWC | 3 cut(s) | 679, 972, 2084 |
| BslFI | GGGAC | 2 cut(s) | 1337, 1985 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 752, 862, 1045, 1649, 1848 |
| BsmAI | GTCTC | 1 cut(s) | 481 |
| BsmFI | GGGAC | 2 cut(s) | 1337, 1985 |
| BsmI | GAATGC | 1 cut(s) | 1410 |
| BsnI | GGCC | 5 cut(s) | 636, 756, 930, 1619, 1723 |
| Bsp1286I | GDGCHC | 4 cut(s) | 679, 972, 1830, 2084 |
| Bsp1407I | TGTACA | 1 cut(s) | 1585 |
| Bsp143I | GATC | 7 cut(s) | 312, 400, 589, 1345, 1524, 1657, 2159 |
| BspANI | GGCC | 5 cut(s) | 636, 756, 930, 1619, 1723 |
| BspCNI | CTCAG | 6 cut(s) | 65, 153, 1230, 1567, 1711, 1756 |
| BspHI | TCATGA | 1 cut(s) | 1560 |
| BspLI | GGNNCC | 7 cut(s) | 116, 374, 854, 1113, 1526, 1787, 1936 |
| BspMI | ACCTGC | 1 cut(s) | 689 |
| BspPI | GGATC | 5 cut(s) | 584, 1340, 1519, 1532, 1665 |
| BspT107I | GGYRCC | 1 cut(s) | 1934 |
| BsrDI | GCAATG | 2 cut(s) | 822, 2055 |
| BsrGI | TGTACA | 1 cut(s) | 1585 |
| BsrI | ACTGG | 4 cut(s) | 644, 1166, 1380, 1604 |
| BssECI | CCNNGG | 5 cut(s) | 552, 631, 1019, 1083, 1115 |
| BssMI | GATC | 7 cut(s) | 312, 400, 589, 1345, 1524, 1657, 2159 |
| BssNAI | GTATAC | 1 cut(s) | 521 |
| BssT1I | CCWWGG | 1 cut(s) | 1083 |
| Bst1107I | GTATAC | 1 cut(s) | 521 |
| Bst2UI | CCWGG | 5 cut(s) | 553, 633, 1020, 1116, 1716 |
| Bst4CI | ACNGT | 7 cut(s) | 341, 546, 604, 1186, 1671, 1898, 2120 |
| Bst6I | CTCTTC | 4 cut(s) | 21, 212, 734, 1298 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2036 |
| BstAUI | TGTACA | 1 cut(s) | 1585 |
| BstC8I | GCNNGC | 6 cut(s) | 468, 489, 638, 758, 932, 1248 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 750, 1846 |
| BstF5I | GGATG | 5 cut(s) | 663, 787, 1551, 1750, 2020 |
| BstH2I | RGCGCY | 1 cut(s) | 532 |
| BstHHI | GCGC | 1 cut(s) | 531 |
| BstKTI | GATC | 7 cut(s) | 315, 403, 592, 1348, 1527, 1660, 2162 |
| BstMAI | GTCTC | 1 cut(s) | 481 |
| BstMBI | GATC | 7 cut(s) | 312, 400, 589, 1345, 1524, 1657, 2159 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1547, 1720, 2024, 2036, 2039, 2111 |
| BstNI | CCWGG | 5 cut(s) | 553, 633, 1020, 1116, 1716 |
| BstNSI | RCATGY | 3 cut(s) | 539, 1276, 1541 |
| BstSCI | CCNGG | 5 cut(s) | 551, 631, 1018, 1114, 1714 |
| BstSFI | CTRYAG | 1 cut(s) | 429 |
| BstSLI | GKGCMC | 2 cut(s) | 679, 1830 |
| BstV2I | GAAGAC | 2 cut(s) | 306, 2136 |
| BstX2I | RGATCY | 3 cut(s) | 1345, 1524, 1657 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1090 |
| BstYI | RGATCY | 3 cut(s) | 1345, 1524, 1657 |
| BstZ17I | GTATAC | 1 cut(s) | 521 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1575, 1863 |
| BsuRI | GGCC | 5 cut(s) | 636, 756, 930, 1619, 1723 |
| BtsCI | GGATG | 5 cut(s) | 663, 787, 1551, 1750, 2020 |
| BtsI | GCAGTG | 1 cut(s) | 2082 |
| BtsIMutI | CAGTG | 6 cut(s) | 677, 1159, 1191, 1225, 1903, 2082 |
| BveI | ACCTGC | 1 cut(s) | 689 |
| Cac8I | GCNNGC | 6 cut(s) | 468, 489, 638, 758, 932, 1248 |
| CaiI | CAGNNNCTG | 2 cut(s) | 978, 1142 |
| CciI | TCATGA | 1 cut(s) | 1560 |
| CfoI | GCGC | 1 cut(s) | 531 |
| Cfr13I | GGNCC | 6 cut(s) | 372, 903, 928, 1036, 1093, 1786 |
| Csp6I | GTAC | 3 cut(s) | 795, 1586, 1935 |
| CviAII | CATG | 9 cut(s) | 41, 109, 296, 364, 536, 1273, 1538, 1561, 2193 |
| CviQI | GTAC | 3 cut(s) | 795, 1586, 1935 |
| DpnI | GATC | 7 cut(s) | 314, 402, 591, 1347, 1526, 1659, 2161 |
| DpnII | GATC | 7 cut(s) | 312, 400, 589, 1345, 1524, 1657, 2159 |
| DraI | TTTAAA | 1 cut(s) | 694 |
| EaeI | YGGCCR | 2 cut(s) | 634, 1617 |
| Eam1104I | CTCTTC | 4 cut(s) | 21, 212, 734, 1298 |
| EarI | CTCTTC | 4 cut(s) | 21, 212, 734, 1298 |
| Eco130I | CCWWGG | 1 cut(s) | 1083 |
| Eco47I | GGWCC | 5 cut(s) | 372, 903, 1036, 1093, 1786 |
| Eco47III | AGCGCT | 1 cut(s) | 530 |
| Eco57I | CTGAAG | 4 cut(s) | 104, 701, 758, 1734 |
| Eco81I | CCTNAGG | 2 cut(s) | 1575, 1863 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 750, 1846 |
| EcoO109I | RGGNCCY | 2 cut(s) | 372, 928 |
| EcoRII | CCWGG | 5 cut(s) | 551, 631, 1018, 1114, 1714 |
| EcoT14I | CCWWGG | 1 cut(s) | 1083 |
| ErhI | CCWWGG | 1 cut(s) | 1083 |
| FaeI | CATG | 9 cut(s) | 44, 112, 299, 367, 539, 1276, 1541, 1564, 2196 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 605, 637, 1598, 1630 |
| FaqI | GGGAC | 2 cut(s) | 1337, 1985 |
| FatI | CATG | 9 cut(s) | 40, 108, 295, 363, 535, 1272, 1537, 1560, 2192 |
| FauNDI | CATATG | 1 cut(s) | 1417 |
| FbaI | TGATCA | 2 cut(s) | 312, 400 |
| FblI | GTMKAC | 2 cut(s) | 428, 520 |
| FokI | GGATG | 5 cut(s) | 670, 794, 1538, 1757, 2027 |
| FspBI | CTAG | 8 cut(s) | 353, 440, 722, 857, 1167, 1464, 1892, 2109 |
| GlaI | GCGC | 1 cut(s) | 530 |
| GsaI | CCCAGC | 1 cut(s) | 900 |
| GsuI | CTGGAG | 1 cut(s) | 1397 |
| HaeII | RGCGCY | 1 cut(s) | 532 |
| HaeIII | GGCC | 5 cut(s) | 636, 756, 930, 1619, 1723 |
| HhaI | GCGC | 1 cut(s) | 531 |
| Hin1II | CATG | 9 cut(s) | 44, 112, 299, 367, 539, 1276, 1541, 1564, 2196 |
| Hin6I | GCGC | 1 cut(s) | 529 |
| HinP1I | GCGC | 1 cut(s) | 529 |
| HincII | GTYRAC | 1 cut(s) | 1062 |
| HindII | GTYRAC | 1 cut(s) | 1062 |
| HindIII | AAGCTT | 2 cut(s) | 1225, 2124 |
| HinfI | GANTC | 6 cut(s) | 17, 434, 474, 742, 1254, 1309 |
| HphI | GGTGA | 1 cut(s) | 253 |
| Hpy166II | GTNNAC | 7 cut(s) | 429, 521, 607, 677, 903, 1062, 1588 |
| Hpy188I | TCNGA | 9 cut(s) | 22, 55, 384, 405, 738, 916, 1753, 1781, 1953 |
| Hpy188III | TCNNGA | 7 cut(s) | 86, 316, 652, 1343, 1561, 1789, 1837 |
| Hpy8I | GTNNAC | 7 cut(s) | 429, 521, 607, 677, 903, 1062, 1588 |
| HpyAV | CCTTC | 6 cut(s) | 128, 499, 577, 1027, 1246, 1776 |
| HpyCH4III | ACNGT | 7 cut(s) | 341, 546, 604, 1186, 1671, 1898, 2120 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1547, 1720, 2024, 2036, 2039, 2111 |
| Hsp92II | CATG | 9 cut(s) | 44, 112, 299, 367, 539, 1276, 1541, 1564, 2196 |
| HspAI | GCGC | 1 cut(s) | 529 |
| KpnI | GGTACC | 1 cut(s) | 1938 |
| Ksp22I | TGATCA | 2 cut(s) | 312, 400 |
| Kzo9I | GATC | 7 cut(s) | 312, 400, 589, 1345, 1524, 1657, 2159 |
| LmnI | GCTCC | 4 cut(s) | 823, 893, 1111, 1460 |
| LweI | GCATC | 6 cut(s) | 155, 279, 772, 1669, 1735, 2005 |
| MaeI | CTAG | 8 cut(s) | 353, 440, 722, 857, 1167, 1464, 1892, 2109 |
| MaeIII | GTNAC | 2 cut(s) | 1170, 1196 |
| MalI | GATC | 7 cut(s) | 314, 402, 591, 1347, 1526, 1659, 2161 |
| MboI | GATC | 7 cut(s) | 312, 400, 589, 1345, 1524, 1657, 2159 |
| MflI | RGATCY | 3 cut(s) | 1345, 1524, 1657 |
| MhlI | GDGCHC | 4 cut(s) | 679, 972, 1830, 2084 |
| MlsI | TGGCCA | 2 cut(s) | 636, 1619 |
| MluCI | AATT | 5 cut(s) | 480, 1000, 1686, 1737, 1919 |
| MluNI | TGGCCA | 2 cut(s) | 636, 1619 |
| MlyI | GAGTC | 3 cut(s) | 483, 751, 1263 |
| MmeI | TCCRAC | 2 cut(s) | 754, 824 |
| Mox20I | TGGCCA | 2 cut(s) | 636, 1619 |
| MscI | TGGCCA | 2 cut(s) | 636, 1619 |
| MseI | TTAA | 7 cut(s) | 612, 693, 882, 1191, 1230, 1293, 1740 |
| MslI | CAYNNNNRTG | 4 cut(s) | 308, 339, 602, 1801 |
| Msp20I | TGGCCA | 2 cut(s) | 636, 1619 |
| MspR9I | CCNGG | 5 cut(s) | 553, 633, 1020, 1116, 1716 |
| Mva1269I | GAATGC | 1 cut(s) | 1410 |
| MvaI | CCWGG | 5 cut(s) | 553, 633, 1020, 1116, 1716 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1547, 1720, 2024, 2036, 2039, 2111 |
| NdeI | CATATG | 1 cut(s) | 1417 |
| NdeII | GATC | 7 cut(s) | 312, 400, 589, 1345, 1524, 1657, 2159 |
| NlaIII | CATG | 9 cut(s) | 44, 112, 299, 367, 539, 1276, 1541, 1564, 2196 |
| NlaIV | GGNNCC | 7 cut(s) | 116, 374, 854, 1113, 1526, 1787, 1936 |
| NmuCI | GTSAC | 2 cut(s) | 1170, 1196 |
| NspI | RCATGY | 3 cut(s) | 539, 1276, 1541 |
| OliI | CACNNNNGTG | 2 cut(s) | 339, 602 |
| PagI | TCATGA | 1 cut(s) | 1560 |
| PctI | GAATGC | 1 cut(s) | 1410 |
| PfeI | GAWTC | 3 cut(s) | 17, 434, 1309 |
| PleI | GAGTC | 3 cut(s) | 482, 750, 1262 |
| PpsI | GAGTC | 3 cut(s) | 482, 750, 1262 |
| PpuMI | RGGWCCY | 1 cut(s) | 372 |
| PsiI | TTATAA | 2 cut(s) | 249, 1125 |
| Psp5II | RGGWCCY | 1 cut(s) | 372 |
| Psp6I | CCWGG | 5 cut(s) | 551, 631, 1018, 1114, 1714 |
| PspFI | CCCAGC | 1 cut(s) | 896 |
| PspGI | CCWGG | 5 cut(s) | 551, 631, 1018, 1114, 1714 |
| PspN4I | GGNNCC | 7 cut(s) | 116, 374, 854, 1113, 1526, 1787, 1936 |
| PspPI | GGNCC | 6 cut(s) | 372, 903, 928, 1036, 1093, 1786 |
| PspPPI | RGGWCCY | 1 cut(s) | 372 |
| PstNI | CAGNNNCTG | 2 cut(s) | 978, 1142 |
| PsuI | RGATCY | 3 cut(s) | 1345, 1524, 1657 |
| RsaI | GTAC | 3 cut(s) | 796, 1587, 1936 |
| RsaNI | GTAC | 3 cut(s) | 795, 1586, 1935 |
| RseI | CAYNNNNRTG | 4 cut(s) | 308, 339, 602, 1801 |
| SaqAI | TTAA | 7 cut(s) | 612, 693, 882, 1191, 1230, 1293, 1740 |
| Sau3AI | GATC | 7 cut(s) | 312, 400, 589, 1345, 1524, 1657, 2159 |
| Sau96I | GGNCC | 6 cut(s) | 372, 903, 928, 1036, 1093, 1786 |
| ScaI | AGTACT | 1 cut(s) | 796 |
| SchI | GAGTC | 3 cut(s) | 483, 751, 1263 |
| ScrFI | CCNGG | 5 cut(s) | 553, 633, 1020, 1116, 1716 |
| SduI | GDGCHC | 4 cut(s) | 679, 972, 1830, 2084 |
| SfaNI | GCATC | 6 cut(s) | 155, 279, 772, 1669, 1735, 2005 |
| SfcI | CTRYAG | 1 cut(s) | 429 |
| SinI | GGWCC | 5 cut(s) | 372, 903, 1036, 1093, 1786 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 308, 339, 602, 1801 |
| SmlI | CTYRAG | 1 cut(s) | 524 |
| SmoI | CTYRAG | 1 cut(s) | 524 |
| Sse9I | AATT | 5 cut(s) | 480, 1000, 1686, 1737, 1919 |
| SspMI | CTAG | 8 cut(s) | 353, 440, 722, 857, 1167, 1464, 1892, 2109 |
| StyD4I | CCNGG | 5 cut(s) | 551, 631, 1018, 1114, 1714 |
| StyI | CCWWGG | 1 cut(s) | 1083 |
| TaaI | ACNGT | 7 cut(s) | 341, 546, 604, 1186, 1671, 1898, 2120 |
| TaqI | TCGA | 3 cut(s) | 270, 1440, 2078 |
| TasI | AATT | 5 cut(s) | 480, 1000, 1686, 1737, 1919 |
| TatI | WGTACW | 2 cut(s) | 794, 1585 |
| TfiI | GAWTC | 3 cut(s) | 17, 434, 1309 |
| Tru1I | TTAA | 7 cut(s) | 612, 693, 882, 1191, 1230, 1293, 1740 |
| Tru9I | TTAA | 7 cut(s) | 612, 693, 882, 1191, 1230, 1293, 1740 |
| TscAI | CASTG | 6 cut(s) | 684, 1166, 1191, 1225, 1903, 2089 |
| TseFI | GTSAC | 2 cut(s) | 1170, 1196 |
| Tsp45I | GTSAC | 2 cut(s) | 1170, 1196 |
| TspDTI | ATGAA | 8 cut(s) | 39, 57, 312, 1115, 1228, 1316, 1549, 2015 |
| TspRI | CASTG | 6 cut(s) | 684, 1166, 1191, 1225, 1903, 2089 |
| VneI | GTGCAC | 1 cut(s) | 675 |
| VpaK11BI | GGWCC | 5 cut(s) | 372, 903, 1036, 1093, 1786 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 750, 1846 |
| XapI | RAATTY | 1 cut(s) | 1000 |
| XceI | RCATGY | 3 cut(s) | 539, 1276, 1541 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 106, 1158 |
| XmiI | GTMKAC | 2 cut(s) | 428, 520 |
| XspI | CTAG | 8 cut(s) | 353, 440, 722, 857, 1167, 1464, 1892, 2109 |
| ZrmI | AGTACT | 1 cut(s) | 796 |