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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 693, 735 |
| Acc65I | GGTACC | 1 cut(s) | 1214 |
| AccB1I | GGYRCC | 1 cut(s) | 1214 |
| AccI | GTMKAC | 1 cut(s) | 426 |
| AclWI | GGATC | 4 cut(s) | 290, 404, 417, 1302 |
| AcuI | CTGAAG | 1 cut(s) | 1293 |
| AdeI | CACNNNGTG | 1 cut(s) | 1111 |
| AfaI | GTAC | 3 cut(s) | 1162, 1216, 1327 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 658, 1055, 1145, 1343 |
| AflIII | ACRYGT | 1 cut(s) | 792 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1044 |
| AjnI | CCWGG | 3 cut(s) | 631, 724, 1144 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 317, 349, 425, 457, 1348, 1380 |
| Alw21I | GWGCWC | 2 cut(s) | 156, 585 |
| Alw26I | GTCTC | 2 cut(s) | 751, 1031 |
| AlwI | GGATC | 4 cut(s) | 290, 404, 417, 1302 |
| AoxI | GGCC | 2 cut(s) | 722, 1349 |
| ApeKI | GCWGC | 5 cut(s) | 340, 457, 1083, 1151, 1382 |
| AseI | ATTAAT | 1 cut(s) | 707 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1402 |
| Asp718I | GGTACC | 1 cut(s) | 1214 |
| AspS9I | GGNCC | 4 cut(s) | 609, 722, 855, 1046 |
| AsuHPI | GGTGA | 1 cut(s) | 512 |
| AvaII | GGWCC | 3 cut(s) | 609, 855, 1046 |
| BamHI | GGATCC | 1 cut(s) | 409 |
| BanI | GGYRCC | 1 cut(s) | 1214 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1369, 1401 |
| Bbv12I | GWGCWC | 2 cut(s) | 156, 585 |
| BbvI | GCAGC | 5 cut(s) | 327, 469, 1095, 1163, 1394 |
| BccI | CCATC | 1 cut(s) | 1037 |
| BciT130I | CCWGG | 3 cut(s) | 633, 726, 1146 |
| BciVI | GTATCC | 1 cut(s) | 322 |
| BclI | TGATCA | 1 cut(s) | 225 |
| BcoDI | GTCTC | 2 cut(s) | 751, 1031 |
| BfaI | CTAG | 7 cut(s) | 239, 279, 344, 488, 1338, 1389, 1476 |
| BfuI | GTATCC | 1 cut(s) | 322 |
| BisI | GCNGC | 5 cut(s) | 341, 458, 1084, 1152, 1383 |
| BlsI | GCNGC | 5 cut(s) | 342, 459, 1085, 1153, 1384 |
| Bme1390I | CCNGG | 3 cut(s) | 633, 726, 1146 |
| Bme18I | GGWCC | 3 cut(s) | 609, 855, 1046 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1044 |
| BmgT120I | GGNCC | 4 cut(s) | 609, 722, 855, 1046 |
| BmiI | GGNNCC | 5 cut(s) | 24, 411, 723, 1048, 1216 |
| BmrFI | CCNGG | 3 cut(s) | 633, 726, 1146 |
| BmsI | GCATC | 6 cut(s) | 110, 558, 1138, 1180, 1267, 1268 |
| BpmI | CTGGAG | 1 cut(s) | 747 |
| Bpu10I | CCTNAGC | 3 cut(s) | 765, 1140, 1254 |
| BsaI | GGTCTC | 1 cut(s) | 751 |
| BsaJI | CCNNGG | 4 cut(s) | 270, 632, 681, 1426 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1318, 1348 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 658, 1055, 1145, 1343 |
| Bse1I | ACTGG | 2 cut(s) | 183, 502 |
| Bse3DI | GCAATG | 1 cut(s) | 1011 |
| BseBI | CCWGG | 3 cut(s) | 633, 726, 1146 |
| BseDI | CCNNGG | 4 cut(s) | 270, 632, 681, 1426 |
| BseGI | GGATG | 2 cut(s) | 840, 897 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 658, 1055, 1145, 1343 |
| BseMI | GCAATG | 1 cut(s) | 1011 |
| BseMII | CTCAG | 4 cut(s) | 465, 767, 1020, 1217 |
| BseNI | ACTGG | 2 cut(s) | 183, 502 |
| BseRI | GAGGAG | 1 cut(s) | 934 |
| BseXI | GCAGC | 5 cut(s) | 327, 469, 1095, 1163, 1394 |
| BsgI | GTGCAG | 3 cut(s) | 796, 1102, 1395 |
| BshFI | GGCC | 2 cut(s) | 724, 1351 |
| BshNI | GGYRCC | 1 cut(s) | 1214 |
| BsiHKAI | GWGCWC | 2 cut(s) | 156, 585 |
| BslFI | GGGAC | 1 cut(s) | 1032 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 658, 1055, 1145, 1343 |
| BsmAI | GTCTC | 2 cut(s) | 751, 1031 |
| BsmFI | GGGAC | 1 cut(s) | 1032 |
| BsnI | GGCC | 2 cut(s) | 724, 1351 |
| Bso31I | GGTCTC | 1 cut(s) | 751 |
| Bsp1286I | GDGCHC | 2 cut(s) | 156, 585 |
| Bsp143I | GATC | 5 cut(s) | 225, 282, 409, 484, 1294 |
| Bsp19I | CCATGG | 2 cut(s) | 270, 681 |
| BspANI | GGCC | 2 cut(s) | 724, 1351 |
| BspCNI | CTCAG | 4 cut(s) | 464, 766, 1021, 1216 |
| BspLI | GGNNCC | 5 cut(s) | 24, 411, 723, 1048, 1216 |
| BspPI | GGATC | 4 cut(s) | 290, 404, 417, 1302 |
| BspT107I | GGYRCC | 1 cut(s) | 1214 |
| BspTNI | GGTCTC | 1 cut(s) | 751 |
| BsrDI | GCAATG | 1 cut(s) | 1011 |
| BsrI | ACTGG | 2 cut(s) | 183, 502 |
| BssECI | CCNNGG | 4 cut(s) | 270, 632, 681, 1426 |
| BssMI | GATC | 5 cut(s) | 225, 282, 409, 484, 1294 |
| BssT1I | CCWWGG | 3 cut(s) | 270, 681, 1426 |
| Bst2UI | CCWGG | 3 cut(s) | 633, 726, 1146 |
| Bst4CI | ACNGT | 1 cut(s) | 83 |
| Bst6I | CTCTTC | 2 cut(s) | 397, 1163 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1472 |
| BstC8I | GCNNGC | 1 cut(s) | 849 |
| BstDSI | CCRYGG | 2 cut(s) | 270, 681 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1143 |
| BstF5I | GGATG | 2 cut(s) | 840, 897 |
| BstKTI | GATC | 5 cut(s) | 228, 285, 412, 487, 1297 |
| BstMAI | GTCTC | 2 cut(s) | 751, 1031 |
| BstMBI | GATC | 5 cut(s) | 225, 282, 409, 484, 1294 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 970, 1092, 1277, 1409, 1418, 1472 |
| BstNI | CCWGG | 3 cut(s) | 633, 726, 1146 |
| BstNSI | RCATGY | 1 cut(s) | 796 |
| BstSCI | CCNGG | 3 cut(s) | 631, 724, 1144 |
| BstV1I | GCAGC | 5 cut(s) | 327, 469, 1095, 1163, 1394 |
| BstX2I | RGATCY | 1 cut(s) | 409 |
| BstYI | RGATCY | 1 cut(s) | 409 |
| BsuI | GTATCC | 1 cut(s) | 322 |
| BsuRI | GGCC | 2 cut(s) | 724, 1351 |
| BtgI | CCRYGG | 2 cut(s) | 270, 681 |
| BtsCI | GGATG | 2 cut(s) | 840, 897 |
| BtsIMutI | CAGTG | 2 cut(s) | 190, 1452 |
| Cac8I | GCNNGC | 1 cut(s) | 849 |
| Cfr13I | GGNCC | 4 cut(s) | 609, 722, 855, 1046 |
| Csp6I | GTAC | 3 cut(s) | 1161, 1215, 1326 |
| CviAII | CATG | 7 cut(s) | 116, 127, 173, 271, 392, 682, 793 |
| CviQI | GTAC | 3 cut(s) | 1161, 1215, 1326 |
| DpnI | GATC | 5 cut(s) | 227, 284, 411, 486, 1296 |
| DpnII | GATC | 5 cut(s) | 225, 282, 409, 484, 1294 |
| DraIII | CACNNNGTG | 1 cut(s) | 1111 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1044 |
| Eam1104I | CTCTTC | 2 cut(s) | 397, 1163 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1044 |
| EarI | CTCTTC | 2 cut(s) | 397, 1163 |
| Eco130I | CCWWGG | 3 cut(s) | 270, 681, 1426 |
| Eco31I | GGTCTC | 1 cut(s) | 751 |
| Eco47I | GGWCC | 3 cut(s) | 609, 855, 1046 |
| Eco57I | CTGAAG | 1 cut(s) | 1293 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1143 |
| EcoO109I | RGGNCCY | 1 cut(s) | 722 |
| EcoRII | CCWGG | 3 cut(s) | 631, 724, 1144 |
| EcoT14I | CCWWGG | 3 cut(s) | 270, 681, 1426 |
| ErhI | CCWWGG | 3 cut(s) | 270, 681, 1426 |
| FaeI | CATG | 7 cut(s) | 119, 130, 176, 274, 395, 685, 796 |
| FaqI | GGGAC | 1 cut(s) | 1032 |
| FatI | CATG | 7 cut(s) | 115, 126, 172, 270, 391, 681, 792 |
| FauNDI | CATATG | 1 cut(s) | 160 |
| FbaI | TGATCA | 1 cut(s) | 225 |
| FblI | GTMKAC | 1 cut(s) | 426 |
| Fnu4HI | GCNGC | 5 cut(s) | 341, 458, 1084, 1152, 1383 |
| FokI | GGATG | 2 cut(s) | 827, 904 |
| Fsp4HI | GCNGC | 5 cut(s) | 341, 458, 1084, 1152, 1383 |
| FspBI | CTAG | 7 cut(s) | 239, 279, 344, 488, 1338, 1389, 1476 |
| GluI | GCNGC | 5 cut(s) | 341, 458, 1084, 1152, 1383 |
| GsuI | CTGGAG | 1 cut(s) | 747 |
| HaeIII | GGCC | 2 cut(s) | 724, 1351 |
| Hin1II | CATG | 7 cut(s) | 119, 130, 176, 274, 395, 685, 796 |
| HincII | GTYRAC | 1 cut(s) | 675 |
| HindII | GTYRAC | 1 cut(s) | 675 |
| HindIII | AAGCTT | 2 cut(s) | 1401, 1419 |
| HinfI | GANTC | 2 cut(s) | 254, 1022 |
| HphI | GGTGA | 1 cut(s) | 512 |
| Hpy166II | GTNNAC | 4 cut(s) | 427, 609, 675, 946 |
| Hpy188I | TCNGA | 7 cut(s) | 53, 191, 287, 454, 529, 756, 1030 |
| Hpy188III | TCNNGA | 5 cut(s) | 10, 37, 380, 472, 488 |
| Hpy8I | GTNNAC | 4 cut(s) | 427, 609, 675, 946 |
| HpyAV | CCTTC | 9 cut(s) | 7, 319, 497, 1027, 1053, 1108, 1285, 1297, 1341 |
| HpyCH4III | ACNGT | 1 cut(s) | 83 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 970, 1092, 1277, 1409, 1418, 1472 |
| Hsp92II | CATG | 7 cut(s) | 119, 130, 176, 274, 395, 685, 796 |
| KpnI | GGTACC | 1 cut(s) | 1218 |
| Ksp22I | TGATCA | 1 cut(s) | 225 |
| Kzo9I | GATC | 5 cut(s) | 225, 282, 409, 484, 1294 |
| LmnI | GCTCC | 4 cut(s) | 337, 465, 728, 1148 |
| Lsp1109I | GCAGC | 5 cut(s) | 327, 469, 1095, 1163, 1394 |
| LweI | GCATC | 6 cut(s) | 110, 558, 1138, 1180, 1267, 1268 |
| MaeI | CTAG | 7 cut(s) | 239, 279, 344, 488, 1338, 1389, 1476 |
| MaeIII | GTNAC | 3 cut(s) | 255, 1103, 1360 |
| MalI | GATC | 5 cut(s) | 227, 284, 411, 486, 1296 |
| MboI | GATC | 5 cut(s) | 225, 282, 409, 484, 1294 |
| MboII | GAAGA | 9 cut(s) | 118, 414, 862, 940, 1124, 1180, 1188, 1286, 1398 |
| MflI | RGATCY | 1 cut(s) | 409 |
| MhlI | GDGCHC | 2 cut(s) | 156, 585 |
| MluCI | AATT | 4 cut(s) | 85, 736, 1096, 1480 |
| MlyI | GAGTC | 1 cut(s) | 263 |
| MnlI | CCTC | 8 cut(s) | 51, 694, 762, 874, 912, 1210, 1236, 1443 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1402 |
| MseI | TTAA | 4 cut(s) | 644, 707, 993, 1001 |
| MslI | CAYNNNNRTG | 2 cut(s) | 159, 177 |
| MspR9I | CCNGG | 3 cut(s) | 633, 726, 1146 |
| MvaI | CCWGG | 3 cut(s) | 633, 726, 1146 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 970, 1092, 1277, 1409, 1418, 1472 |
| NcoI | CCATGG | 2 cut(s) | 270, 681 |
| NdeI | CATATG | 1 cut(s) | 160 |
| NdeII | GATC | 5 cut(s) | 225, 282, 409, 484, 1294 |
| NlaIII | CATG | 7 cut(s) | 119, 130, 176, 274, 395, 685, 796 |
| NlaIV | GGNNCC | 5 cut(s) | 24, 411, 723, 1048, 1216 |
| NmuCI | GTSAC | 2 cut(s) | 255, 1103 |
| NspI | RCATGY | 1 cut(s) | 796 |
| PciI | ACATGT | 1 cut(s) | 792 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1402 |
| PfeI | GAWTC | 1 cut(s) | 1022 |
| PflFI | GACNNNGTC | 1 cut(s) | 47 |
| PkrI | GCNGC | 5 cut(s) | 342, 459, 1085, 1153, 1384 |
| PleI | GAGTC | 1 cut(s) | 262 |
| PpsI | GAGTC | 1 cut(s) | 262 |
| PscI | ACATGT | 1 cut(s) | 792 |
| PshBI | ATTAAT | 1 cut(s) | 707 |
| PsiI | TTATAA | 2 cut(s) | 693, 735 |
| Psp6I | CCWGG | 3 cut(s) | 631, 724, 1144 |
| PspGI | CCWGG | 3 cut(s) | 631, 724, 1144 |
| PspN4I | GGNNCC | 5 cut(s) | 24, 411, 723, 1048, 1216 |
| PspPI | GGNCC | 4 cut(s) | 609, 722, 855, 1046 |
| PsuI | RGATCY | 1 cut(s) | 409 |
| PsyI | GACNNNGTC | 1 cut(s) | 47 |
| RsaI | GTAC | 3 cut(s) | 1162, 1216, 1327 |
| RsaNI | GTAC | 3 cut(s) | 1161, 1215, 1326 |
| RseI | CAYNNNNRTG | 2 cut(s) | 159, 177 |
| SaqAI | TTAA | 4 cut(s) | 644, 707, 993, 1001 |
| SatI | GCNGC | 5 cut(s) | 341, 458, 1084, 1152, 1383 |
| Sau3AI | GATC | 5 cut(s) | 225, 282, 409, 484, 1294 |
| Sau96I | GGNCC | 4 cut(s) | 609, 722, 855, 1046 |
| SchI | GAGTC | 1 cut(s) | 263 |
| ScrFI | CCNGG | 3 cut(s) | 633, 726, 1146 |
| SduI | GDGCHC | 2 cut(s) | 156, 585 |
| SfaNI | GCATC | 6 cut(s) | 110, 558, 1138, 1180, 1267, 1268 |
| SinI | GGWCC | 3 cut(s) | 609, 855, 1046 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 159, 177 |
| Sse9I | AATT | 4 cut(s) | 85, 736, 1096, 1480 |
| SspMI | CTAG | 7 cut(s) | 239, 279, 344, 488, 1338, 1389, 1476 |
| StyD4I | CCNGG | 3 cut(s) | 631, 724, 1144 |
| StyI | CCWWGG | 3 cut(s) | 270, 681, 1426 |
| TaaI | ACNGT | 1 cut(s) | 83 |
| TaqI | TCGA | 1 cut(s) | 104 |
| TasI | AATT | 4 cut(s) | 85, 736, 1096, 1480 |
| TfiI | GAWTC | 1 cut(s) | 1022 |
| Tru1I | TTAA | 4 cut(s) | 644, 707, 993, 1001 |
| Tru9I | TTAA | 4 cut(s) | 644, 707, 993, 1001 |
| TscAI | CASTG | 2 cut(s) | 190, 1452 |
| TseFI | GTSAC | 2 cut(s) | 255, 1103 |
| TseI | GCWGC | 5 cut(s) | 340, 457, 1083, 1151, 1382 |
| Tsp45I | GTSAC | 2 cut(s) | 255, 1103 |
| TspRI | CASTG | 2 cut(s) | 190, 1452 |
| Tth111I | GACNNNGTC | 1 cut(s) | 47 |
| VpaK11BI | GGWCC | 3 cut(s) | 609, 855, 1046 |
| VspI | ATTAAT | 1 cut(s) | 707 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1143 |
| XbaI | TCTAGA | 1 cut(s) | 487 |
| XceI | RCATGY | 1 cut(s) | 796 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 722, 768 |
| XmiI | GTMKAC | 1 cut(s) | 426 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1402 |
| XspI | CTAG | 7 cut(s) | 239, 279, 344, 488, 1338, 1389, 1476 |