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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1169 |
| AccI | GTMKAC | 1 cut(s) | 226 |
| AccII | CGCG | 1 cut(s) | 19 |
| AciI | CCGC | 1 cut(s) | 17 |
| AclWI | GGATC | 6 cut(s) | 607, 626, 639, 653, 666, 1679 |
| AcoI | YGGCCR | 1 cut(s) | 274 |
| AcsI | RAATTY | 2 cut(s) | 1343, 1495 |
| AcuI | CTGAAG | 3 cut(s) | 958, 1116, 1473 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 236, 1169, 1627 |
| AflIII | ACRYGT | 3 cut(s) | 1019, 1364, 1583 |
| AhlI | ACTAGT | 1 cut(s) | 1634 |
| AjnI | CCWGG | 2 cut(s) | 112, 1234 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 18, 50, 1446, 1478, 1645, 1677 |
| AleI | CACNNNNGTG | 1 cut(s) | 26 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 459, 491 |
| Alw21I | GWGCWC | 1 cut(s) | 1573 |
| Alw26I | GTCTC | 1 cut(s) | 661 |
| Alw44I | GTGCAC | 1 cut(s) | 1569 |
| AlwI | GGATC | 6 cut(s) | 607, 626, 639, 653, 666, 1679 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 923 |
| AoxI | GGCC | 2 cut(s) | 274, 1241 |
| ApaLI | GTGCAC | 1 cut(s) | 1569 |
| ApeKI | GCWGC | 4 cut(s) | 160, 416, 917, 1231 |
| ApoI | RAATTY | 2 cut(s) | 1343, 1495 |
| AspLEI | GCGC | 1 cut(s) | 21 |
| AspS9I | GGNCC | 3 cut(s) | 423, 516, 950 |
| AsuC2I | CCSGG | 1 cut(s) | 1669 |
| AsuHPI | GGTGA | 2 cut(s) | 50, 1006 |
| AvaII | GGWCC | 3 cut(s) | 423, 516, 950 |
| BaeGI | GKGCMC | 3 cut(s) | 694, 1353, 1573 |
| BalI | TGGCCA | 1 cut(s) | 276 |
| BamHI | GGATCC | 2 cut(s) | 631, 658 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1115, 1147 |
| BbsI | GAAGAC | 2 cut(s) | 807, 1104 |
| Bbv12I | GWGCWC | 1 cut(s) | 1573 |
| BbvI | GCAGC | 4 cut(s) | 147, 403, 929, 1243 |
| BccI | CCATC | 4 cut(s) | 212, 239, 790, 1214 |
| BceAI | ACGGC | 1 cut(s) | 303 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 564, 598 |
| BciT130I | CCWGG | 2 cut(s) | 114, 1236 |
| BciVI | GTATCC | 1 cut(s) | 1420 |
| BclI | TGATCA | 1 cut(s) | 487 |
| BcnI | CCSGG | 1 cut(s) | 1669 |
| BcoDI | GTCTC | 1 cut(s) | 661 |
| BcuI | ACTAGT | 1 cut(s) | 1634 |
| BfaI | CTAG | 5 cut(s) | 377, 638, 771, 1566, 1635 |
| BfuI | GTATCC | 1 cut(s) | 1420 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1240 |
| BisI | GCNGC | 5 cut(s) | 17, 161, 417, 918, 1232 |
| BlsI | GCNGC | 5 cut(s) | 18, 162, 418, 919, 1233 |
| Bme1390I | CCNGG | 3 cut(s) | 114, 1236, 1669 |
| Bme18I | GGWCC | 3 cut(s) | 423, 516, 950 |
| BmgT120I | GGNCC | 3 cut(s) | 423, 516, 950 |
| BmiI | GGNNCC | 3 cut(s) | 374, 633, 660 |
| BmrFI | CCNGG | 3 cut(s) | 114, 1236, 1669 |
| BmsI | GCATC | 8 cut(s) | 292, 349, 590, 1207, 1255, 1571, 1625, 1681 |
| BpiI | GAAGAC | 2 cut(s) | 807, 1104 |
| BpuMI | CCSGG | 1 cut(s) | 1669 |
| Bsa29I | ATCGAT | 1 cut(s) | 126 |
| BsaAI | YACGTR | 1 cut(s) | 1586 |
| BsaI | GGTCTC | 1 cut(s) | 661 |
| BsaJI | CCNNGG | 5 cut(s) | 112, 336, 662, 1235, 1686 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 236, 1169, 1627 |
| Bse118I | RCCGGY | 1 cut(s) | 1227 |
| Bse1I | ACTGG | 3 cut(s) | 164, 277, 1163 |
| Bse3DI | GCAATG | 2 cut(s) | 324, 930 |
| BseBI | CCWGG | 2 cut(s) | 114, 1236 |
| BseCI | ATCGAT | 1 cut(s) | 126 |
| BseDI | CCNNGG | 5 cut(s) | 112, 336, 662, 1235, 1686 |
| BseGI | GGATG | 8 cut(s) | 10, 307, 400, 1198, 1206, 1270, 1616, 1696 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 236, 1169, 1627 |
| BseMI | GCAATG | 2 cut(s) | 324, 930 |
| BseMII | CTCAG | 3 cut(s) | 1263, 1460, 1625 |
| BseNI | ACTGG | 3 cut(s) | 164, 277, 1163 |
| BseSI | GKGCMC | 3 cut(s) | 694, 1353, 1573 |
| BseXI | GCAGC | 4 cut(s) | 147, 403, 929, 1243 |
| Bsh1236I | CGCG | 1 cut(s) | 19 |
| BshFI | GGCC | 2 cut(s) | 276, 1243 |
| BshVI | ATCGAT | 1 cut(s) | 126 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1573 |
| BsiSI | CCGG | 2 cut(s) | 1228, 1669 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 236, 1169, 1627 |
| BsmAI | GTCTC | 1 cut(s) | 661 |
| BsmI | GAATGC | 2 cut(s) | 1044, 1555 |
| BsnI | GGCC | 2 cut(s) | 276, 1243 |
| Bso31I | GGTCTC | 1 cut(s) | 661 |
| Bsp1286I | GDGCHC | 3 cut(s) | 694, 1353, 1573 |
| Bsp143I | GATC | 8 cut(s) | 104, 487, 556, 612, 631, 658, 1316, 1671 |
| Bsp19I | CCATGG | 1 cut(s) | 336 |
| BspACI | CCGC | 1 cut(s) | 17 |
| BspANI | GGCC | 2 cut(s) | 276, 1243 |
| BspCNI | CTCAG | 3 cut(s) | 1264, 1459, 1624 |
| BspDI | ATCGAT | 1 cut(s) | 126 |
| BspFNI | CGCG | 1 cut(s) | 19 |
| BspHI | TCATGA | 1 cut(s) | 618 |
| BspLI | GGNNCC | 3 cut(s) | 374, 633, 660 |
| BspPI | GGATC | 6 cut(s) | 607, 626, 639, 653, 666, 1679 |
| BspTNI | GGTCTC | 1 cut(s) | 661 |
| BsrDI | GCAATG | 2 cut(s) | 324, 930 |
| BsrFI | RCCGGY | 1 cut(s) | 1227 |
| BsrI | ACTGG | 3 cut(s) | 164, 277, 1163 |
| BssAI | RCCGGY | 1 cut(s) | 1227 |
| BssECI | CCNNGG | 5 cut(s) | 112, 336, 662, 1235, 1686 |
| BssMI | GATC | 8 cut(s) | 104, 487, 556, 612, 631, 658, 1316, 1671 |
| BssT1I | CCWWGG | 3 cut(s) | 336, 662, 1686 |
| Bst2UI | CCWGG | 2 cut(s) | 114, 1236 |
| Bst4CI | ACNGT | 4 cut(s) | 272, 1191, 1337, 1462 |
| Bst6I | CTCTTC | 1 cut(s) | 835 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1568 |
| BstBAI | YACGTR | 1 cut(s) | 1586 |
| BstC8I | GCNNGC | 2 cut(s) | 199, 779 |
| BstDEI | CTNAG | 5 cut(s) | 1272, 1446, 1536, 1611, 1626 |
| BstDSI | CCRYGG | 1 cut(s) | 336 |
| BstF5I | GGATG | 8 cut(s) | 10, 307, 400, 1198, 1206, 1270, 1616, 1696 |
| BstFNI | CGCG | 1 cut(s) | 19 |
| BstHHI | GCGC | 1 cut(s) | 21 |
| BstKTI | GATC | 8 cut(s) | 107, 490, 559, 615, 634, 661, 1319, 1674 |
| BstMAI | GTCTC | 1 cut(s) | 661 |
| BstMBI | GATC | 8 cut(s) | 104, 487, 556, 612, 631, 658, 1316, 1671 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1240, 1532, 1559, 1568 |
| BstNI | CCWGG | 2 cut(s) | 114, 1236 |
| BstNSI | RCATGY | 3 cut(s) | 573, 1023, 1368 |
| BstSCI | CCNGG | 3 cut(s) | 112, 1234, 1667 |
| BstSLI | GKGCMC | 3 cut(s) | 694, 1353, 1573 |
| BstUI | CGCG | 1 cut(s) | 19 |
| BstV1I | GCAGC | 4 cut(s) | 147, 403, 929, 1243 |
| BstV2I | GAAGAC | 2 cut(s) | 807, 1104 |
| BstX2I | RGATCY | 2 cut(s) | 631, 658 |
| BstYI | RGATCY | 2 cut(s) | 631, 658 |
| Bsu15I | ATCGAT | 1 cut(s) | 126 |
| BsuI | GTATCC | 1 cut(s) | 1420 |
| BsuRI | GGCC | 2 cut(s) | 276, 1243 |
| BsuTUI | ATCGAT | 1 cut(s) | 126 |
| BtgI | CCRYGG | 1 cut(s) | 336 |
| BtsCI | GGATG | 8 cut(s) | 10, 307, 400, 1198, 1206, 1270, 1616, 1696 |
| BtsIMutI | CAGTG | 1 cut(s) | 982 |
| Cac8I | GCNNGC | 2 cut(s) | 199, 779 |
| CaiI | CAGNNNCTG | 1 cut(s) | 923 |
| CciI | TCATGA | 1 cut(s) | 618 |
| CfoI | GCGC | 1 cut(s) | 21 |
| Cfr10I | RCCGGY | 1 cut(s) | 1227 |
| Cfr13I | GGNCC | 3 cut(s) | 423, 516, 950 |
| ClaI | ATCGAT | 1 cut(s) | 126 |
| DdeI | CTNAG | 5 cut(s) | 1272, 1446, 1536, 1611, 1626 |
| DpnI | GATC | 8 cut(s) | 106, 489, 558, 614, 633, 660, 1318, 1673 |
| DpnII | GATC | 8 cut(s) | 104, 487, 556, 612, 631, 658, 1316, 1671 |
| EaeI | YGGCCR | 1 cut(s) | 274 |
| Eam1104I | CTCTTC | 1 cut(s) | 835 |
| EarI | CTCTTC | 1 cut(s) | 835 |
| Eco130I | CCWWGG | 3 cut(s) | 336, 662, 1686 |
| Eco31I | GGTCTC | 1 cut(s) | 661 |
| Eco47I | GGWCC | 3 cut(s) | 423, 516, 950 |
| Eco57I | CTGAAG | 3 cut(s) | 958, 1116, 1473 |
| EcoRII | CCWGG | 2 cut(s) | 112, 1234 |
| EcoT14I | CCWWGG | 3 cut(s) | 336, 662, 1686 |
| ErhI | CCWWGG | 3 cut(s) | 336, 662, 1686 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 997, 1029 |
| FauNDI | CATATG | 1 cut(s) | 331 |
| FbaI | TGATCA | 1 cut(s) | 487 |
| FblI | GTMKAC | 1 cut(s) | 226 |
| Fnu4HI | GCNGC | 5 cut(s) | 17, 161, 417, 918, 1232 |
| FokI | GGATG | 7 cut(s) | 17, 314, 407, 1185, 1193, 1277, 1603 |
| Fsp4HI | GCNGC | 5 cut(s) | 17, 161, 417, 918, 1232 |
| FspBI | CTAG | 5 cut(s) | 377, 638, 771, 1566, 1635 |
| GlaI | GCGC | 1 cut(s) | 20 |
| GluI | GCNGC | 5 cut(s) | 17, 161, 417, 918, 1232 |
| HaeIII | GGCC | 2 cut(s) | 276, 1243 |
| HapII | CCGG | 2 cut(s) | 1228, 1669 |
| HhaI | GCGC | 1 cut(s) | 21 |
| Hin6I | GCGC | 1 cut(s) | 19 |
| HinP1I | GCGC | 1 cut(s) | 19 |
| HincII | GTYRAC | 3 cut(s) | 1108, 1128, 1581 |
| HindII | GTYRAC | 3 cut(s) | 1108, 1128, 1581 |
| HindIII | AAGCTT | 4 cut(s) | 970, 1422, 1478, 1659 |
| HinfI | GANTC | 4 cut(s) | 743, 829, 867, 1257 |
| HpaII | CCGG | 2 cut(s) | 1228, 1669 |
| HphI | GGTGA | 2 cut(s) | 50, 1006 |
| Hpy166II | GTNNAC | 8 cut(s) | 227, 400, 997, 1055, 1108, 1128, 1571, 1581 |
| Hpy188I | TCNGA | 5 cut(s) | 879, 1273, 1449, 1485, 1676 |
| Hpy188III | TCNNGA | 5 cut(s) | 152, 172, 619, 727, 1290 |
| Hpy8I | GTNNAC | 8 cut(s) | 227, 400, 997, 1055, 1108, 1128, 1571, 1581 |
| HpyAV | CCTTC | 5 cut(s) | 436, 907, 1220, 1299, 1411 |
| HpyCH4III | ACNGT | 4 cut(s) | 272, 1191, 1337, 1462 |
| HpyCH4IV | ACGT | 1 cut(s) | 1585 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1240, 1532, 1559, 1568 |
| HpyF3I | CTNAG | 5 cut(s) | 1272, 1446, 1536, 1611, 1626 |
| HpySE526I | ACGT | 1 cut(s) | 1585 |
| HspAI | GCGC | 1 cut(s) | 19 |
| Ksp22I | TGATCA | 1 cut(s) | 487 |
| Kzo9I | GATC | 8 cut(s) | 104, 487, 556, 612, 631, 658, 1316, 1671 |
| LmnI | GCTCC | 3 cut(s) | 194, 459, 898 |
| Lsp1109I | GCAGC | 4 cut(s) | 147, 403, 929, 1243 |
| LweI | GCATC | 8 cut(s) | 292, 349, 590, 1207, 1255, 1571, 1625, 1681 |
| MaeI | CTAG | 5 cut(s) | 377, 638, 771, 1566, 1635 |
| MaeII | ACGT | 1 cut(s) | 1585 |
| MaeIII | GTNAC | 4 cut(s) | 137, 266, 434, 1308 |
| MalI | GATC | 8 cut(s) | 106, 489, 558, 614, 633, 660, 1318, 1673 |
| MboI | GATC | 8 cut(s) | 104, 487, 556, 612, 631, 658, 1316, 1671 |
| MboII | GAAGA | 6 cut(s) | 634, 812, 852, 892, 1109, 1292 |
| MfeI | CAATTG | 1 cut(s) | 560 |
| MflI | RGATCY | 2 cut(s) | 631, 658 |
| MhlI | GDGCHC | 3 cut(s) | 694, 1353, 1573 |
| MlsI | TGGCCA | 1 cut(s) | 276 |
| MluCI | AATT | 8 cut(s) | 133, 344, 560, 856, 1298, 1343, 1495, 1653 |
| MluNI | TGGCCA | 1 cut(s) | 276 |
| MmeI | TCCRAC | 2 cut(s) | 1444, 1466 |
| Mox20I | TGGCCA | 1 cut(s) | 276 |
| MscI | TGGCCA | 1 cut(s) | 276 |
| MseI | TTAA | 7 cut(s) | 525, 603, 699, 750, 1037, 1359, 1656 |
| MslI | CAYNNNNRTG | 1 cut(s) | 26 |
| Msp20I | TGGCCA | 1 cut(s) | 276 |
| MspI | CCGG | 2 cut(s) | 1228, 1669 |
| MspR9I | CCNGG | 3 cut(s) | 114, 1236, 1669 |
| MunI | CAATTG | 1 cut(s) | 560 |
| Mva1269I | GAATGC | 2 cut(s) | 1044, 1555 |
| MvaI | CCWGG | 2 cut(s) | 114, 1236 |
| MvnI | CGCG | 1 cut(s) | 19 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1240, 1532, 1559, 1568 |
| NciI | CCSGG | 1 cut(s) | 1669 |
| NcoI | CCATGG | 1 cut(s) | 336 |
| NdeI | CATATG | 1 cut(s) | 331 |
| NdeII | GATC | 8 cut(s) | 104, 487, 556, 612, 631, 658, 1316, 1671 |
| NlaIV | GGNNCC | 3 cut(s) | 374, 633, 660 |
| NmeAIII | GCCGAG | 1 cut(s) | 1269 |
| NmuCI | GTSAC | 3 cut(s) | 137, 434, 1308 |
| NspI | RCATGY | 3 cut(s) | 573, 1023, 1368 |
| OliI | CACNNNNGTG | 1 cut(s) | 26 |
| PagI | TCATGA | 1 cut(s) | 618 |
| PciI | ACATGT | 2 cut(s) | 1019, 1364 |
| PctI | GAATGC | 2 cut(s) | 1044, 1555 |
| PfeI | GAWTC | 4 cut(s) | 743, 829, 867, 1257 |
| PflFI | GACNNNGTC | 1 cut(s) | 589 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1169 |
| PkrI | GCNGC | 5 cut(s) | 18, 162, 418, 919, 1233 |
| Ppu21I | YACGTR | 1 cut(s) | 1586 |
| PscI | ACATGT | 2 cut(s) | 1019, 1364 |
| Psp6I | CCWGG | 2 cut(s) | 112, 1234 |
| PspGI | CCWGG | 2 cut(s) | 112, 1234 |
| PspN4I | GGNNCC | 3 cut(s) | 374, 633, 660 |
| PspPI | GGNCC | 3 cut(s) | 423, 516, 950 |
| PstNI | CAGNNNCTG | 1 cut(s) | 923 |
| PsuI | RGATCY | 2 cut(s) | 631, 658 |
| PsyI | GACNNNGTC | 1 cut(s) | 589 |
| RseI | CAYNNNNRTG | 1 cut(s) | 26 |
| SaqAI | TTAA | 7 cut(s) | 525, 603, 699, 750, 1037, 1359, 1656 |
| SatI | GCNGC | 5 cut(s) | 17, 161, 417, 918, 1232 |
| Sau3AI | GATC | 8 cut(s) | 104, 487, 556, 612, 631, 658, 1316, 1671 |
| Sau96I | GGNCC | 3 cut(s) | 423, 516, 950 |
| ScrFI | CCNGG | 3 cut(s) | 114, 1236, 1669 |
| SduI | GDGCHC | 3 cut(s) | 694, 1353, 1573 |
| SfaNI | GCATC | 8 cut(s) | 292, 349, 590, 1207, 1255, 1571, 1625, 1681 |
| SinI | GGWCC | 3 cut(s) | 423, 516, 950 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 26 |
| SpeI | ACTAGT | 1 cut(s) | 1634 |
| Sse9I | AATT | 8 cut(s) | 133, 344, 560, 856, 1298, 1343, 1495, 1653 |
| SsiI | CCGC | 1 cut(s) | 17 |
| SspMI | CTAG | 5 cut(s) | 377, 638, 771, 1566, 1635 |
| StyD4I | CCNGG | 3 cut(s) | 112, 1234, 1667 |
| StyI | CCWWGG | 3 cut(s) | 336, 662, 1686 |
| TaaI | ACNGT | 4 cut(s) | 272, 1191, 1337, 1462 |
| TaiI | ACGT | 1 cut(s) | 1588 |
| TaqI | TCGA | 2 cut(s) | 126, 584 |
| TasI | AATT | 8 cut(s) | 133, 344, 560, 856, 1298, 1343, 1495, 1653 |
| TauI | GCSGC | 1 cut(s) | 19 |
| TfiI | GAWTC | 4 cut(s) | 743, 829, 867, 1257 |
| Tru1I | TTAA | 7 cut(s) | 525, 603, 699, 750, 1037, 1359, 1656 |
| Tru9I | TTAA | 7 cut(s) | 525, 603, 699, 750, 1037, 1359, 1656 |
| TscAI | CASTG | 1 cut(s) | 982 |
| TseFI | GTSAC | 3 cut(s) | 137, 434, 1308 |
| TseI | GCWGC | 4 cut(s) | 160, 416, 917, 1231 |
| Tsp45I | GTSAC | 3 cut(s) | 137, 434, 1308 |
| TspDTI | ATGAA | 7 cut(s) | 71, 84, 418, 635, 836, 1064, 1593 |
| TspGWI | ACGGA | 1 cut(s) | 671 |
| TspRI | CASTG | 1 cut(s) | 982 |
| Tth111I | GACNNNGTC | 1 cut(s) | 589 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1169 |
| VneI | GTGCAC | 1 cut(s) | 1569 |
| VpaK11BI | GGWCC | 3 cut(s) | 423, 516, 950 |
| XapI | RAATTY | 2 cut(s) | 1343, 1495 |
| XceI | RCATGY | 3 cut(s) | 573, 1023, 1368 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 343 |
| XmiI | GTMKAC | 1 cut(s) | 226 |
| XspI | CTAG | 5 cut(s) | 377, 638, 771, 1566, 1635 |