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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1510 |
| Acc36I | ACCTGC | 3 cut(s) | 979, 1510, 1645 |
| AccB1I | GGYRCC | 1 cut(s) | 1742 |
| AclWI | GGATC | 8 cut(s) | 207, 229, 242, 387, 400, 612, 1544, 1823 |
| AcoI | YGGCCR | 1 cut(s) | 1561 |
| AcuI | CTGAAG | 1 cut(s) | 782 |
| AfaI | GTAC | 7 cut(s) | 23, 260, 344, 796, 1635, 1654, 1723 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 755, 858, 1376, 1377, 1739 |
| AflIII | ACRYGT | 1 cut(s) | 348 |
| AgsI | TTSAA | 5 cut(s) | 736, 866, 904, 1163, 1288 |
| AjnI | CCWGG | 6 cut(s) | 388, 481, 578, 851, 1471, 1682 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 248, 280, 1834, 1866 |
| Alw21I | GWGCWC | 2 cut(s) | 1138, 1813 |
| Alw26I | GTCTC | 1 cut(s) | 563 |
| AlwI | GGATC | 8 cut(s) | 207, 229, 242, 387, 400, 612, 1544, 1823 |
| AoxI | GGCC | 7 cut(s) | 161, 757, 1050, 1347, 1445, 1561, 1602 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 149 |
| AspA2I | CCTAGG | 1 cut(s) | 1082 |
| AspS9I | GGNCC | 6 cut(s) | 425, 576, 757, 1079, 1680, 1730 |
| AsuC2I | CCSGG | 1 cut(s) | 750 |
| AsuHPI | GGTGA | 2 cut(s) | 280, 1190 |
| AvaII | GGWCC | 5 cut(s) | 425, 576, 1079, 1680, 1730 |
| AvrII | CCTAGG | 1 cut(s) | 1082 |
| BalI | TGGCCA | 1 cut(s) | 1563 |
| BamHI | GGATCC | 2 cut(s) | 234, 392 |
| BanI | GGYRCC | 1 cut(s) | 1742 |
| Bbv12I | GWGCWC | 2 cut(s) | 1138, 1813 |
| BbvCI | CCTCAGC | 1 cut(s) | 195 |
| BccI | CCATC | 6 cut(s) | 22, 110, 412, 416, 594, 1018 |
| BciT130I | CCWGG | 6 cut(s) | 390, 483, 580, 853, 1473, 1684 |
| BciVI | GTATCC | 1 cut(s) | 1416 |
| BclI | TGATCA | 1 cut(s) | 337 |
| BcnI | CCSGG | 1 cut(s) | 750 |
| BcoDI | GTCTC | 1 cut(s) | 563 |
| BfaI | CTAG | 6 cut(s) | 662, 792, 839, 975, 1083, 1803 |
| BfmI | CTRYAG | 3 cut(s) | 60, 498, 1398 |
| BfuAI | ACCTGC | 3 cut(s) | 979, 1510, 1645 |
| BfuI | GTATCC | 1 cut(s) | 1416 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1610 |
| BlnI | CCTAGG | 1 cut(s) | 1082 |
| BlpI | GCTNAGC | 1 cut(s) | 696 |
| BmcAI | AGTACT | 2 cut(s) | 796, 1723 |
| Bme1390I | CCNGG | 7 cut(s) | 390, 483, 580, 750, 853, 1473, 1684 |
| Bme18I | GGWCC | 5 cut(s) | 425, 576, 1079, 1680, 1730 |
| BmgT120I | GGNCC | 6 cut(s) | 425, 576, 757, 1079, 1680, 1730 |
| BmiI | GGNNCC | 5 cut(s) | 236, 394, 1395, 1732, 1744 |
| BmrFI | CCNGG | 7 cut(s) | 390, 483, 580, 750, 853, 1473, 1684 |
| BmsI | GCATC | 5 cut(s) | 487, 727, 754, 814, 838 |
| BoxI | GACNNNNGTC | 1 cut(s) | 459 |
| Bpu10I | CCTNAGC | 2 cut(s) | 195, 377 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 696 |
| BpuEI | CTTGAG | 3 cut(s) | 168, 783, 850 |
| BpuMI | CCSGG | 1 cut(s) | 750 |
| BsaBI | GATNNNNATC | 1 cut(s) | 120 |
| BsaJI | CCNNGG | 2 cut(s) | 164, 1082 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 755, 858, 1376, 1377, 1739 |
| Bse1I | ACTGG | 3 cut(s) | 43, 1174, 1180 |
| Bse3DI | GCAATG | 2 cut(s) | 1371, 1410 |
| Bse8I | GATNNNNATC | 1 cut(s) | 120 |
| BseBI | CCWGG | 6 cut(s) | 390, 483, 580, 853, 1473, 1684 |
| BseDI | CCNNGG | 2 cut(s) | 164, 1082 |
| BseJI | GATNNNNATC | 1 cut(s) | 120 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 755, 858, 1376, 1377, 1739 |
| BseMI | GCAATG | 2 cut(s) | 1371, 1410 |
| BseMII | CTCAG | 3 cut(s) | 186, 610, 687 |
| BseNI | ACTGG | 3 cut(s) | 43, 1174, 1180 |
| BseYI | CCCAGC | 2 cut(s) | 1331, 1532 |
| BsgI | GTGCAG | 2 cut(s) | 299, 1623 |
| BshFI | GGCC | 7 cut(s) | 163, 759, 1052, 1349, 1447, 1563, 1604 |
| BshNI | GGYRCC | 1 cut(s) | 1742 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1138, 1813 |
| BsiSI | CCGG | 1 cut(s) | 749 |
| BslFI | GGGAC | 1 cut(s) | 1716 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 755, 858, 1376, 1377, 1739 |
| BsmAI | GTCTC | 1 cut(s) | 563 |
| BsmFI | GGGAC | 1 cut(s) | 1716 |
| BsmI | GAATGC | 2 cut(s) | 784, 1039 |
| BsnI | GGCC | 7 cut(s) | 163, 759, 1052, 1349, 1447, 1563, 1604 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1138, 1813 |
| Bsp143I | GATC | 8 cut(s) | 199, 234, 337, 392, 405, 604, 1536, 1828 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 696 |
| BspANI | GGCC | 7 cut(s) | 163, 759, 1052, 1349, 1447, 1563, 1604 |
| BspCNI | CTCAG | 3 cut(s) | 187, 609, 688 |
| BspHI | TCATGA | 1 cut(s) | 639 |
| BspLI | GGNNCC | 5 cut(s) | 236, 394, 1395, 1732, 1744 |
| BspMAI | CTGCAG | 1 cut(s) | 502 |
| BspMI | ACCTGC | 3 cut(s) | 979, 1510, 1645 |
| BspPI | GGATC | 8 cut(s) | 207, 229, 242, 387, 400, 612, 1544, 1823 |
| BspT107I | GGYRCC | 1 cut(s) | 1742 |
| BsrDI | GCAATG | 2 cut(s) | 1371, 1410 |
| BsrI | ACTGG | 3 cut(s) | 43, 1174, 1180 |
| BssECI | CCNNGG | 2 cut(s) | 164, 1082 |
| BssMI | GATC | 8 cut(s) | 199, 234, 337, 392, 405, 604, 1536, 1828 |
| BssT1I | CCWWGG | 2 cut(s) | 164, 1082 |
| Bst2UI | CCWGG | 6 cut(s) | 390, 483, 580, 853, 1473, 1684 |
| Bst4CI | ACNGT | 6 cut(s) | 47, 400, 458, 710, 885, 1714 |
| Bst6I | CTCTTC | 2 cut(s) | 99, 1451 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1274 |
| BstC8I | GCNNGC | 4 cut(s) | 1193, 1197, 1266, 1565 |
| BstDEI | CTNAG | 9 cut(s) | 132, 195, 377, 596, 608, 696, 915, 1244, 1449 |
| BstKTI | GATC | 8 cut(s) | 202, 237, 340, 395, 408, 607, 1539, 1831 |
| BstMAI | GTCTC | 1 cut(s) | 563 |
| BstMBI | GATC | 8 cut(s) | 199, 234, 337, 392, 405, 604, 1536, 1828 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 188, 302, 1221, 1274, 1610, 1619, 1808 |
| BstNI | CCWGG | 6 cut(s) | 390, 483, 580, 853, 1473, 1684 |
| BstNSI | RCATGY | 4 cut(s) | 352, 1199, 1230, 1268 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 459 |
| BstSCI | CCNGG | 7 cut(s) | 388, 481, 578, 748, 851, 1471, 1682 |
| BstSFI | CTRYAG | 3 cut(s) | 60, 498, 1398 |
| BstX2I | RGATCY | 5 cut(s) | 199, 234, 392, 604, 1828 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 885 |
| BstYI | RGATCY | 5 cut(s) | 199, 234, 392, 604, 1828 |
| BsuI | GTATCC | 1 cut(s) | 1416 |
| BsuRI | GGCC | 7 cut(s) | 163, 759, 1052, 1349, 1447, 1563, 1604 |
| BtgZI | GCGATG | 1 cut(s) | 1329 |
| BtsIMutI | CAGTG | 3 cut(s) | 36, 706, 890 |
| BveI | ACCTGC | 3 cut(s) | 979, 1510, 1645 |
| Cac8I | GCNNGC | 4 cut(s) | 1193, 1197, 1266, 1565 |
| CciI | TCATGA | 1 cut(s) | 639 |
| Cfr13I | GGNCC | 6 cut(s) | 425, 576, 757, 1079, 1680, 1730 |
| CsiI | ACCWGGT | 1 cut(s) | 578 |
| Csp6I | GTAC | 7 cut(s) | 22, 259, 343, 795, 1634, 1653, 1722 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1540, 1575 |
| CviQI | GTAC | 7 cut(s) | 22, 259, 343, 795, 1634, 1653, 1722 |
| DdeI | CTNAG | 9 cut(s) | 132, 195, 377, 596, 608, 696, 915, 1244, 1449 |
| DpnI | GATC | 8 cut(s) | 201, 236, 339, 394, 407, 606, 1538, 1830 |
| DpnII | GATC | 8 cut(s) | 199, 234, 337, 392, 405, 604, 1536, 1828 |
| EaeI | YGGCCR | 1 cut(s) | 1561 |
| Eam1104I | CTCTTC | 2 cut(s) | 99, 1451 |
| EarI | CTCTTC | 2 cut(s) | 99, 1451 |
| Eco130I | CCWWGG | 2 cut(s) | 164, 1082 |
| Eco147I | AGGCCT | 3 cut(s) | 163, 1349, 1447 |
| Eco47I | GGWCC | 5 cut(s) | 425, 576, 1079, 1680, 1730 |
| Eco57I | CTGAAG | 1 cut(s) | 782 |
| EcoO109I | RGGNCCY | 1 cut(s) | 757 |
| EcoRII | CCWGG | 6 cut(s) | 388, 481, 578, 851, 1471, 1682 |
| EcoT14I | CCWWGG | 2 cut(s) | 164, 1082 |
| ErhI | CCWWGG | 2 cut(s) | 164, 1082 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1834, 1866 |
| FaqI | GGGAC | 1 cut(s) | 1716 |
| FauNDI | CATATG | 1 cut(s) | 541 |
| FbaI | TGATCA | 1 cut(s) | 337 |
| FspBI | CTAG | 6 cut(s) | 662, 792, 839, 975, 1083, 1803 |
| GsaI | CCCAGC | 2 cut(s) | 1335, 1536 |
| HaeIII | GGCC | 7 cut(s) | 163, 759, 1052, 1349, 1447, 1563, 1604 |
| HapII | CCGG | 1 cut(s) | 749 |
| HindIII | AAGCTT | 1 cut(s) | 1848 |
| HinfI | GANTC | 8 cut(s) | 65, 98, 121, 874, 947, 1252, 1284, 1792 |
| HpaII | CCGG | 1 cut(s) | 749 |
| HphI | GGTGA | 2 cut(s) | 280, 1190 |
| Hpy166II | GTNNAC | 1 cut(s) | 1653 |
| Hpy188I | TCNGA | 6 cut(s) | 52, 70, 103, 599, 1283, 1858 |
| Hpy188III | TCNNGA | 8 cut(s) | 185, 409, 640, 866, 891, 1288, 1440, 1540 |
| Hpy8I | GTNNAC | 1 cut(s) | 1653 |
| HpyAV | CCTTC | 9 cut(s) | 139, 317, 361, 649, 1038, 1060, 1375, 1437, 1474 |
| HpyCH4III | ACNGT | 6 cut(s) | 47, 400, 458, 710, 885, 1714 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 188, 302, 1221, 1274, 1610, 1619, 1808 |
| HpyF3I | CTNAG | 9 cut(s) | 132, 195, 377, 596, 608, 696, 915, 1244, 1449 |
| Ksp22I | TGATCA | 1 cut(s) | 337 |
| Kzo9I | GATC | 8 cut(s) | 199, 234, 337, 392, 405, 604, 1536, 1828 |
| LmnI | GCTCC | 2 cut(s) | 381, 835 |
| LweI | GCATC | 5 cut(s) | 487, 727, 754, 814, 838 |
| MabI | ACCWGGT | 1 cut(s) | 578 |
| MaeI | CTAG | 6 cut(s) | 662, 792, 839, 975, 1083, 1803 |
| MaeIII | GTNAC | 2 cut(s) | 3, 920 |
| MalI | GATC | 8 cut(s) | 201, 236, 339, 394, 407, 606, 1538, 1830 |
| MboI | GATC | 8 cut(s) | 199, 234, 337, 392, 405, 604, 1536, 1828 |
| MboII | GAAGA | 8 cut(s) | 116, 125, 186, 265, 1018, 1105, 1468, 1708 |
| MfeI | CAATTG | 3 cut(s) | 534, 672, 767 |
| MflI | RGATCY | 5 cut(s) | 199, 234, 392, 604, 1828 |
| MhlI | GDGCHC | 2 cut(s) | 1138, 1813 |
| MlsI | TGGCCA | 1 cut(s) | 1563 |
| MluNI | TGGCCA | 1 cut(s) | 1563 |
| MlyI | GAGTC | 1 cut(s) | 956 |
| MmeI | TCCRAC | 1 cut(s) | 246 |
| Mox20I | TGGCCA | 1 cut(s) | 1563 |
| MroXI | GAANNNNTTC | 1 cut(s) | 149 |
| MscI | TGGCCA | 1 cut(s) | 1563 |
| MseI | TTAA | 2 cut(s) | 954, 1873 |
| MslI | CAYNNNNRTG | 3 cut(s) | 822, 1143, 1340 |
| Msp20I | TGGCCA | 1 cut(s) | 1563 |
| MspI | CCGG | 1 cut(s) | 749 |
| MspR9I | CCNGG | 7 cut(s) | 390, 483, 580, 750, 853, 1473, 1684 |
| MunI | CAATTG | 3 cut(s) | 534, 672, 767 |
| Mva1269I | GAATGC | 2 cut(s) | 784, 1039 |
| MvaI | CCWGG | 6 cut(s) | 390, 483, 580, 853, 1473, 1684 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 188, 302, 1221, 1274, 1610, 1619, 1808 |
| NciI | CCSGG | 1 cut(s) | 750 |
| NdeI | CATATG | 1 cut(s) | 541 |
| NdeII | GATC | 8 cut(s) | 199, 234, 337, 392, 405, 604, 1536, 1828 |
| NlaIV | GGNNCC | 5 cut(s) | 236, 394, 1395, 1732, 1744 |
| NmuCI | GTSAC | 2 cut(s) | 3, 920 |
| NspI | RCATGY | 4 cut(s) | 352, 1199, 1230, 1268 |
| PaeI | GCATGC | 2 cut(s) | 1199, 1268 |
| PagI | TCATGA | 1 cut(s) | 639 |
| PaqCI | CACCTGC | 1 cut(s) | 1510 |
| PceI | AGGCCT | 3 cut(s) | 163, 1349, 1447 |
| PciI | ACATGT | 1 cut(s) | 348 |
| PctI | GAATGC | 2 cut(s) | 784, 1039 |
| PdmI | GAANNNNTTC | 1 cut(s) | 149 |
| PfeI | GAWTC | 7 cut(s) | 65, 98, 121, 874, 1252, 1284, 1792 |
| PfoI | TCCNGGA | 4 cut(s) | 388, 481, 748, 1682 |
| PleI | GAGTC | 1 cut(s) | 955 |
| PpsI | GAGTC | 1 cut(s) | 955 |
| PscI | ACATGT | 1 cut(s) | 348 |
| PshAI | GACNNNNGTC | 1 cut(s) | 459 |
| Psp6I | CCWGG | 6 cut(s) | 388, 481, 578, 851, 1471, 1682 |
| PspFI | CCCAGC | 2 cut(s) | 1331, 1532 |
| PspGI | CCWGG | 6 cut(s) | 388, 481, 578, 851, 1471, 1682 |
| PspN4I | GGNNCC | 5 cut(s) | 236, 394, 1395, 1732, 1744 |
| PspPI | GGNCC | 6 cut(s) | 425, 576, 757, 1079, 1680, 1730 |
| PstI | CTGCAG | 1 cut(s) | 502 |
| PsuI | RGATCY | 5 cut(s) | 199, 234, 392, 604, 1828 |
| RsaI | GTAC | 7 cut(s) | 23, 260, 344, 796, 1635, 1654, 1723 |
| RsaNI | GTAC | 7 cut(s) | 22, 259, 343, 795, 1634, 1653, 1722 |
| RseI | CAYNNNNRTG | 3 cut(s) | 822, 1143, 1340 |
| SaqAI | TTAA | 2 cut(s) | 954, 1873 |
| Sau3AI | GATC | 8 cut(s) | 199, 234, 337, 392, 405, 604, 1536, 1828 |
| Sau96I | GGNCC | 6 cut(s) | 425, 576, 757, 1079, 1680, 1730 |
| ScaI | AGTACT | 2 cut(s) | 796, 1723 |
| SchI | GAGTC | 1 cut(s) | 956 |
| ScrFI | CCNGG | 7 cut(s) | 390, 483, 580, 750, 853, 1473, 1684 |
| SduI | GDGCHC | 2 cut(s) | 1138, 1813 |
| SexAI | ACCWGGT | 1 cut(s) | 578 |
| SfaNI | GCATC | 5 cut(s) | 487, 727, 754, 814, 838 |
| SfcI | CTRYAG | 3 cut(s) | 60, 498, 1398 |
| SinI | GGWCC | 5 cut(s) | 425, 576, 1079, 1680, 1730 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 822, 1143, 1340 |
| SmlI | CTYRAG | 3 cut(s) | 183, 798, 829 |
| SmoI | CTYRAG | 3 cut(s) | 183, 798, 829 |
| SphI | GCATGC | 2 cut(s) | 1199, 1268 |
| SseBI | AGGCCT | 3 cut(s) | 163, 1349, 1447 |
| SspMI | CTAG | 6 cut(s) | 662, 792, 839, 975, 1083, 1803 |
| StuI | AGGCCT | 3 cut(s) | 163, 1349, 1447 |
| StyD4I | CCNGG | 7 cut(s) | 388, 481, 578, 748, 851, 1471, 1682 |
| StyI | CCWWGG | 2 cut(s) | 164, 1082 |
| TaaI | ACNGT | 6 cut(s) | 47, 400, 458, 710, 885, 1714 |
| TaqI | TCGA | 2 cut(s) | 224, 1141 |
| TatI | WGTACW | 5 cut(s) | 258, 342, 794, 1652, 1721 |
| TfiI | GAWTC | 7 cut(s) | 65, 98, 121, 874, 1252, 1284, 1792 |
| Tru1I | TTAA | 2 cut(s) | 954, 1873 |
| Tru9I | TTAA | 2 cut(s) | 954, 1873 |
| TscAI | CASTG | 3 cut(s) | 43, 713, 890 |
| TseFI | GTSAC | 2 cut(s) | 3, 920 |
| Tsp45I | GTSAC | 2 cut(s) | 3, 920 |
| TspDTI | ATGAA | 9 cut(s) | 126, 332, 336, 574, 628, 924, 1469, 1482, 1842 |
| TspRI | CASTG | 3 cut(s) | 43, 713, 890 |
| VpaK11BI | GGWCC | 5 cut(s) | 425, 576, 1079, 1680, 1730 |
| XceI | RCATGY | 4 cut(s) | 352, 1199, 1230, 1268 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1339 |
| XmaJI | CCTAGG | 1 cut(s) | 1082 |
| XmnI | GAANNNNTTC | 1 cut(s) | 149 |
| XspI | CTAG | 6 cut(s) | 662, 792, 839, 975, 1083, 1803 |
| ZrmI | AGTACT | 2 cut(s) | 796, 1723 |