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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 357 |
| Acc36I | ACCTGC | 1 cut(s) | 357 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 191, 512, 524, 596 |
| AccBSI | CCGCTC | 1 cut(s) | 936 |
| AccI | GTMKAC | 1 cut(s) | 1110 |
| AciI | CCGC | 4 cut(s) | 749, 934, 976, 1042 |
| AclI | AACGTT | 1 cut(s) | 1208 |
| AclWI | GGATC | 3 cut(s) | 163, 176, 836 |
| AcoI | YGGCCR | 2 cut(s) | 119, 1069 |
| AcuI | CTGAAG | 1 cut(s) | 822 |
| AfaI | GTAC | 3 cut(s) | 158, 275, 356 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 191, 478, 512, 524, 596 |
| AgsI | TTSAA | 2 cut(s) | 398, 632 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 900 |
| AjnI | CCWGG | 4 cut(s) | 172, 184, 435, 767 |
| AluBI | AGCT | 2 cut(s) | 290, 953 |
| AluI | AGCT | 2 cut(s) | 290, 953 |
| Alw21I | GWGCWC | 2 cut(s) | 348, 788 |
| AlwI | GGATC | 3 cut(s) | 163, 176, 836 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 191, 836 |
| AoxI | GGCC | 6 cut(s) | 51, 119, 469, 515, 536, 1069 |
| ApeKI | GCWGC | 5 cut(s) | 235, 746, 794, 1018, 1123 |
| AseI | ATTAAT | 2 cut(s) | 33, 603 |
| AspA2I | CCTAGG | 2 cut(s) | 130, 563 |
| AspLEI | GCGC | 1 cut(s) | 1123 |
| AspS9I | GGNCC | 6 cut(s) | 51, 146, 413, 457, 491, 515 |
| AsuHPI | GGTGA | 2 cut(s) | 434, 1027 |
| AvaII | GGWCC | 4 cut(s) | 146, 413, 457, 491 |
| AvrII | CCTAGG | 2 cut(s) | 130, 563 |
| BalI | TGGCCA | 1 cut(s) | 121 |
| BamHI | GGATCC | 1 cut(s) | 168 |
| BbsI | GAAGAC | 2 cut(s) | 592, 977 |
| Bbv12I | GWGCWC | 2 cut(s) | 348, 788 |
| BbvI | GCAGC | 5 cut(s) | 222, 758, 781, 1030, 1135 |
| BccI | CCATC | 8 cut(s) | 68, 470, 506, 803, 807, 848, 852, 1072 |
| BceAI | ACGGC | 2 cut(s) | 963, 1088 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1124, 1158 |
| BciT130I | CCWGG | 4 cut(s) | 174, 186, 437, 769 |
| BciVI | GTATCC | 1 cut(s) | 586 |
| BclI | TGATCA | 1 cut(s) | 1032 |
| BfaI | CTAG | 3 cut(s) | 131, 252, 564 |
| BfuAI | ACCTGC | 1 cut(s) | 357 |
| BfuI | GTATCC | 1 cut(s) | 586 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1068, 1093 |
| BisI | GCNGC | 6 cut(s) | 236, 747, 750, 795, 1019, 1124 |
| BlnI | CCTAGG | 2 cut(s) | 130, 563 |
| BlsI | GCNGC | 6 cut(s) | 237, 748, 751, 796, 1020, 1125 |
| Bme1390I | CCNGG | 4 cut(s) | 174, 186, 437, 769 |
| Bme18I | GGWCC | 4 cut(s) | 146, 413, 457, 491 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 900 |
| BmgT120I | GGNCC | 6 cut(s) | 51, 146, 413, 457, 491, 515 |
| BmiI | GGNNCC | 4 cut(s) | 52, 170, 414, 615 |
| BmrFI | CCNGG | 4 cut(s) | 174, 186, 437, 769 |
| BmrI | ACTGGG | 2 cut(s) | 114, 197 |
| BmsI | GCATC | 4 cut(s) | 205, 211, 418, 653 |
| BmuI | ACTGGG | 2 cut(s) | 114, 197 |
| BpiI | GAAGAC | 2 cut(s) | 592, 977 |
| BpuEI | CTTGAG | 1 cut(s) | 624 |
| BsaBI | GATNNNNATC | 1 cut(s) | 605 |
| BsaJI | CCNNGG | 7 cut(s) | 130, 172, 173, 358, 436, 563, 768 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 191, 478, 512, 524, 596 |
| Bse1I | ACTGG | 5 cut(s) | 109, 122, 164, 196, 203 |
| Bse8I | GATNNNNATC | 1 cut(s) | 605 |
| BseBI | CCWGG | 4 cut(s) | 174, 186, 437, 769 |
| BseDI | CCNNGG | 7 cut(s) | 130, 172, 173, 358, 436, 563, 768 |
| BseGI | GGATG | 6 cut(s) | 79, 274, 712, 818, 863, 1064 |
| BseJI | GATNNNNATC | 1 cut(s) | 605 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 191, 478, 512, 524, 596 |
| BseMII | CTCAG | 2 cut(s) | 690, 983 |
| BseNI | ACTGG | 5 cut(s) | 109, 122, 164, 196, 203 |
| BseXI | GCAGC | 5 cut(s) | 222, 758, 781, 1030, 1135 |
| BseYI | CCCAGC | 1 cut(s) | 875 |
| BsgI | GTGCAG | 1 cut(s) | 780 |
| BshFI | GGCC | 6 cut(s) | 53, 121, 471, 517, 538, 1071 |
| BsiHKAI | GWGCWC | 2 cut(s) | 348, 788 |
| BsiSI | CCGG | 2 cut(s) | 1068, 1127 |
| BslFI | GGGAC | 1 cut(s) | 869 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 191, 478, 512, 524, 596 |
| BsmFI | GGGAC | 1 cut(s) | 869 |
| BsnI | GGCC | 6 cut(s) | 53, 121, 471, 517, 538, 1071 |
| Bsp1286I | GDGCHC | 2 cut(s) | 348, 788 |
| Bsp143I | GATC | 4 cut(s) | 168, 322, 841, 1032 |
| BspACI | CCGC | 4 cut(s) | 749, 934, 976, 1042 |
| BspANI | GGCC | 6 cut(s) | 53, 121, 471, 517, 538, 1071 |
| BspCNI | CTCAG | 2 cut(s) | 689, 984 |
| BspLI | GGNNCC | 4 cut(s) | 52, 170, 414, 615 |
| BspMI | ACCTGC | 1 cut(s) | 357 |
| BspPI | GGATC | 3 cut(s) | 163, 176, 836 |
| BsrBI | CCGCTC | 1 cut(s) | 936 |
| BsrI | ACTGG | 5 cut(s) | 109, 122, 164, 196, 203 |
| BssECI | CCNNGG | 7 cut(s) | 130, 172, 173, 358, 436, 563, 768 |
| BssMI | GATC | 4 cut(s) | 168, 322, 841, 1032 |
| BssT1I | CCWWGG | 3 cut(s) | 130, 358, 563 |
| Bst2UI | CCWGG | 4 cut(s) | 174, 186, 437, 769 |
| Bst4CI | ACNGT | 3 cut(s) | 146, 595, 883 |
| Bst6I | CTCTTC | 1 cut(s) | 393 |
| BstC8I | GCNNGC | 1 cut(s) | 1085 |
| BstDEI | CTNAG | 3 cut(s) | 676, 738, 992 |
| BstF5I | GGATG | 6 cut(s) | 79, 274, 712, 818, 863, 1064 |
| BstHHI | GCGC | 1 cut(s) | 1123 |
| BstKTI | GATC | 4 cut(s) | 171, 325, 844, 1035 |
| BstMBI | GATC | 4 cut(s) | 168, 322, 841, 1032 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1068, 1093, 1132 |
| BstNI | CCWGG | 4 cut(s) | 174, 186, 437, 769 |
| BstSCI | CCNGG | 4 cut(s) | 172, 184, 435, 767 |
| BstV1I | GCAGC | 5 cut(s) | 222, 758, 781, 1030, 1135 |
| BstV2I | GAAGAC | 2 cut(s) | 592, 977 |
| BstX2I | RGATCY | 1 cut(s) | 168 |
| BstYI | RGATCY | 1 cut(s) | 168 |
| BsuI | GTATCC | 1 cut(s) | 586 |
| BsuRI | GGCC | 6 cut(s) | 53, 121, 471, 517, 538, 1071 |
| BtsCI | GGATG | 6 cut(s) | 79, 274, 712, 818, 863, 1064 |
| BtsIMutI | CAGTG | 1 cut(s) | 890 |
| BveI | ACCTGC | 1 cut(s) | 357 |
| Cac8I | GCNNGC | 1 cut(s) | 1085 |
| CaiI | CAGNNNCTG | 2 cut(s) | 191, 836 |
| CfoI | GCGC | 1 cut(s) | 1123 |
| Cfr13I | GGNCC | 6 cut(s) | 51, 146, 413, 457, 491, 515 |
| Csp6I | GTAC | 3 cut(s) | 157, 274, 355 |
| CviAII | CATG | 2 cut(s) | 461, 545 |
| CviQI | GTAC | 3 cut(s) | 157, 274, 355 |
| DdeI | CTNAG | 3 cut(s) | 676, 738, 992 |
| DpnI | GATC | 4 cut(s) | 170, 324, 843, 1034 |
| DpnII | GATC | 4 cut(s) | 168, 322, 841, 1032 |
| DriI | GACNNNNNGTC | 1 cut(s) | 900 |
| EaeI | YGGCCR | 2 cut(s) | 119, 1069 |
| Eam1104I | CTCTTC | 1 cut(s) | 393 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 900 |
| EarI | CTCTTC | 1 cut(s) | 393 |
| EciI | GGCGGA | 1 cut(s) | 965 |
| Eco130I | CCWWGG | 3 cut(s) | 130, 358, 563 |
| Eco47I | GGWCC | 4 cut(s) | 146, 413, 457, 491 |
| Eco57I | CTGAAG | 1 cut(s) | 822 |
| EcoO109I | RGGNCCY | 1 cut(s) | 413 |
| EcoRII | CCWGG | 4 cut(s) | 172, 184, 435, 767 |
| EcoT14I | CCWWGG | 3 cut(s) | 130, 358, 563 |
| ErhI | CCWWGG | 3 cut(s) | 130, 358, 563 |
| FaeI | CATG | 2 cut(s) | 464, 548 |
| FaqI | GGGAC | 1 cut(s) | 869 |
| FatI | CATG | 2 cut(s) | 460, 544 |
| FauI | CCCGC | 1 cut(s) | 1049 |
| FauNDI | CATATG | 2 cut(s) | 124, 790 |
| FbaI | TGATCA | 1 cut(s) | 1032 |
| FblI | GTMKAC | 1 cut(s) | 1110 |
| Fnu4HI | GCNGC | 6 cut(s) | 236, 747, 750, 795, 1019, 1124 |
| FokI | GGATG | 6 cut(s) | 86, 281, 719, 825, 870, 1051 |
| Fsp4HI | GCNGC | 6 cut(s) | 236, 747, 750, 795, 1019, 1124 |
| FspBI | CTAG | 3 cut(s) | 131, 252, 564 |
| GlaI | GCGC | 1 cut(s) | 1122 |
| GluI | GCNGC | 6 cut(s) | 236, 747, 750, 795, 1019, 1124 |
| GsaI | CCCAGC | 1 cut(s) | 879 |
| HaeIII | GGCC | 6 cut(s) | 53, 121, 471, 517, 538, 1071 |
| HapII | CCGG | 2 cut(s) | 1068, 1127 |
| HhaI | GCGC | 1 cut(s) | 1123 |
| Hin1II | CATG | 2 cut(s) | 464, 548 |
| Hin6I | GCGC | 1 cut(s) | 1121 |
| HinP1I | GCGC | 1 cut(s) | 1121 |
| HincII | GTYRAC | 1 cut(s) | 82 |
| HindII | GTYRAC | 1 cut(s) | 82 |
| HindIII | AAGCTT | 1 cut(s) | 951 |
| HinfI | GANTC | 3 cut(s) | 833, 943, 1141 |
| HpaII | CCGG | 2 cut(s) | 1068, 1127 |
| HphI | GGTGA | 2 cut(s) | 434, 1027 |
| Hpy166II | GTNNAC | 4 cut(s) | 82, 182, 274, 1111 |
| Hpy188I | TCNGA | 3 cut(s) | 823, 838, 993 |
| Hpy188III | TCNNGA | 4 cut(s) | 252, 308, 579, 1030 |
| Hpy8I | GTNNAC | 4 cut(s) | 82, 182, 274, 1111 |
| Hpy99I | CGWCG | 1 cut(s) | 1109 |
| HpyAV | CCTTC | 7 cut(s) | 50, 258, 627, 718, 736, 922, 1088 |
| HpyCH4III | ACNGT | 3 cut(s) | 146, 595, 883 |
| HpyCH4IV | ACGT | 2 cut(s) | 1172, 1208 |
| HpyCH4V | TGCA | 7 cut(s) | 218, 238, 431, 623, 797, 960, 1189 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1068, 1093, 1132 |
| HpyF3I | CTNAG | 3 cut(s) | 676, 738, 992 |
| HpySE526I | ACGT | 2 cut(s) | 1172, 1208 |
| Hsp92II | CATG | 2 cut(s) | 464, 548 |
| HspAI | GCGC | 1 cut(s) | 1121 |
| Ksp22I | TGATCA | 1 cut(s) | 1032 |
| Kzo9I | GATC | 4 cut(s) | 168, 322, 841, 1032 |
| LmnI | GCTCC | 6 cut(s) | 343, 508, 565, 613, 941, 1182 |
| Lsp1109I | GCAGC | 5 cut(s) | 222, 758, 781, 1030, 1135 |
| LweI | GCATC | 4 cut(s) | 205, 211, 418, 653 |
| MaeI | CTAG | 3 cut(s) | 131, 252, 564 |
| MaeII | ACGT | 2 cut(s) | 1172, 1208 |
| MaeIII | GTNAC | 2 cut(s) | 100, 208 |
| MalI | GATC | 4 cut(s) | 170, 324, 843, 1034 |
| MbiI | CCGCTC | 1 cut(s) | 936 |
| MboI | GATC | 4 cut(s) | 168, 322, 841, 1032 |
| MboII | GAAGA | 7 cut(s) | 410, 437, 594, 597, 733, 815, 977 |
| MfeI | CAATTG | 1 cut(s) | 407 |
| MflI | RGATCY | 1 cut(s) | 168 |
| MhlI | GDGCHC | 2 cut(s) | 348, 788 |
| MlsI | TGGCCA | 1 cut(s) | 121 |
| MluCI | AATT | 3 cut(s) | 239, 407, 1181 |
| MluNI | TGGCCA | 1 cut(s) | 121 |
| MlyI | GAGTC | 1 cut(s) | 1150 |
| MmeI | TCCRAC | 4 cut(s) | 530, 684, 694, 895 |
| Mox20I | TGGCCA | 1 cut(s) | 121 |
| MscI | TGGCCA | 1 cut(s) | 121 |
| MseI | TTAA | 5 cut(s) | 33, 111, 372, 603, 665 |
| MslI | CAYNNNNRTG | 1 cut(s) | 330 |
| Msp20I | TGGCCA | 1 cut(s) | 121 |
| MspA1I | CMGCKG | 1 cut(s) | 749 |
| MspI | CCGG | 2 cut(s) | 1068, 1127 |
| MspR9I | CCNGG | 4 cut(s) | 174, 186, 437, 769 |
| MunI | CAATTG | 1 cut(s) | 407 |
| MvaI | CCWGG | 4 cut(s) | 174, 186, 437, 769 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1068, 1093, 1132 |
| NdeI | CATATG | 2 cut(s) | 124, 790 |
| NdeII | GATC | 4 cut(s) | 168, 322, 841, 1032 |
| NlaIII | CATG | 2 cut(s) | 464, 548 |
| NlaIV | GGNNCC | 4 cut(s) | 52, 170, 414, 615 |
| NmuCI | GTSAC | 1 cut(s) | 208 |
| PaqCI | CACCTGC | 1 cut(s) | 357 |
| PasI | CCCWGGG | 1 cut(s) | 173 |
| PfeI | GAWTC | 2 cut(s) | 833, 943 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 191, 512, 524, 596 |
| PkrI | GCNGC | 6 cut(s) | 237, 748, 751, 796, 1020, 1125 |
| PleI | GAGTC | 1 cut(s) | 1149 |
| PpsI | GAGTC | 1 cut(s) | 1149 |
| PpuMI | RGGWCCY | 1 cut(s) | 413 |
| PshBI | ATTAAT | 2 cut(s) | 33, 603 |
| Psp1406I | AACGTT | 1 cut(s) | 1208 |
| Psp5II | RGGWCCY | 1 cut(s) | 413 |
| Psp6I | CCWGG | 4 cut(s) | 172, 184, 435, 767 |
| PspFI | CCCAGC | 1 cut(s) | 875 |
| PspGI | CCWGG | 4 cut(s) | 172, 184, 435, 767 |
| PspN4I | GGNNCC | 4 cut(s) | 52, 170, 414, 615 |
| PspPI | GGNCC | 6 cut(s) | 51, 146, 413, 457, 491, 515 |
| PspPPI | RGGWCCY | 1 cut(s) | 413 |
| PstNI | CAGNNNCTG | 2 cut(s) | 191, 836 |
| PsuI | RGATCY | 1 cut(s) | 168 |
| RsaI | GTAC | 3 cut(s) | 158, 275, 356 |
| RsaNI | GTAC | 3 cut(s) | 157, 274, 355 |
| RseI | CAYNNNNRTG | 1 cut(s) | 330 |
| SaqAI | TTAA | 5 cut(s) | 33, 111, 372, 603, 665 |
| SatI | GCNGC | 6 cut(s) | 236, 747, 750, 795, 1019, 1124 |
| Sau3AI | GATC | 4 cut(s) | 168, 322, 841, 1032 |
| Sau96I | GGNCC | 6 cut(s) | 51, 146, 413, 457, 491, 515 |
| SchI | GAGTC | 1 cut(s) | 1150 |
| ScrFI | CCNGG | 4 cut(s) | 174, 186, 437, 769 |
| SduI | GDGCHC | 2 cut(s) | 348, 788 |
| SfaNI | GCATC | 4 cut(s) | 205, 211, 418, 653 |
| SinI | GGWCC | 4 cut(s) | 146, 413, 457, 491 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 330 |
| SmlI | CTYRAG | 1 cut(s) | 639 |
| SmoI | CTYRAG | 1 cut(s) | 639 |
| Sse9I | AATT | 3 cut(s) | 239, 407, 1181 |
| SsiI | CCGC | 4 cut(s) | 749, 934, 976, 1042 |
| SspMI | CTAG | 3 cut(s) | 131, 252, 564 |
| StyD4I | CCNGG | 4 cut(s) | 172, 184, 435, 767 |
| StyI | CCWWGG | 3 cut(s) | 130, 358, 563 |
| TaaI | ACNGT | 3 cut(s) | 146, 595, 883 |
| TaiI | ACGT | 2 cut(s) | 1175, 1211 |
| TaqI | TCGA | 2 cut(s) | 1212, 1218 |
| TasI | AATT | 3 cut(s) | 239, 407, 1181 |
| TatI | WGTACW | 2 cut(s) | 156, 273 |
| TauI | GCSGC | 1 cut(s) | 752 |
| TfiI | GAWTC | 2 cut(s) | 833, 943 |
| Tru1I | TTAA | 5 cut(s) | 33, 111, 372, 603, 665 |
| Tru9I | TTAA | 5 cut(s) | 33, 111, 372, 603, 665 |
| TscAI | CASTG | 1 cut(s) | 897 |
| TseFI | GTSAC | 1 cut(s) | 208 |
| TseI | GCWGC | 5 cut(s) | 235, 746, 794, 1018, 1123 |
| Tsp45I | GTSAC | 1 cut(s) | 208 |
| TspDTI | ATGAA | 3 cut(s) | 358, 777, 977 |
| TspRI | CASTG | 1 cut(s) | 897 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 191, 512, 524, 596 |
| VpaK11BI | GGWCC | 4 cut(s) | 146, 413, 457, 491 |
| VspI | ATTAAT | 2 cut(s) | 33, 603 |
| XbaI | TCTAGA | 1 cut(s) | 251 |
| XmaJI | CCTAGG | 2 cut(s) | 130, 563 |
| XmiI | GTMKAC | 1 cut(s) | 1110 |
| XspI | CTAG | 3 cut(s) | 131, 252, 564 |