transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RF-1 | PF00472 | 112 - 171 | 3.2e-19 | RF-1 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 365 |
| AciI | CCGC | 1 cut(s) | 385 |
| AclWI | GGATC | 4 cut(s) | 453, 462, 543, 678 |
| AcsI | RAATTY | 2 cut(s) | 573, 641 |
| AcyI | GRCGYC | 1 cut(s) | 362 |
| AfaI | GTAC | 1 cut(s) | 408 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 192 |
| AflII | CTTAAG | 1 cut(s) | 413 |
| AgsI | TTSAA | 3 cut(s) | 87, 358, 572 |
| AjnI | CCWGG | 1 cut(s) | 370 |
| AluBI | AGCT | 8 cut(s) | 110, 180, 258, 485, 512, 565, 662, 790 |
| AluI | AGCT | 8 cut(s) | 110, 180, 258, 485, 512, 565, 662, 790 |
| Alw21I | GWGCWC | 3 cut(s) | 260, 731, 739 |
| Alw26I | GTCTC | 3 cut(s) | 204, 703, 747 |
| Alw44I | GTGCAC | 1 cut(s) | 735 |
| AlwI | GGATC | 4 cut(s) | 453, 462, 543, 678 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 110 |
| Ama87I | CYCGRG | 1 cut(s) | 558 |
| AoxI | GGCC | 2 cut(s) | 153, 368 |
| ApaLI | GTGCAC | 1 cut(s) | 735 |
| ApeKI | GCWGC | 4 cut(s) | 104, 107, 110, 707 |
| ApoI | RAATTY | 2 cut(s) | 573, 641 |
| AspS9I | GGNCC | 3 cut(s) | 319, 368, 626 |
| AvaI | CYCGRG | 1 cut(s) | 558 |
| AvaII | GGWCC | 2 cut(s) | 319, 626 |
| BaeGI | GKGCMC | 2 cut(s) | 353, 739 |
| BanII | GRGCYC | 1 cut(s) | 260 |
| BbsI | GAAGAC | 1 cut(s) | 231 |
| Bbv12I | GWGCWC | 3 cut(s) | 260, 731, 739 |
| BbvCI | CCTCAGC | 1 cut(s) | 481 |
| BbvI | GCAGC | 4 cut(s) | 97, 116, 119, 719 |
| BccI | CCATC | 4 cut(s) | 154, 284, 536, 683 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 455, 489 |
| BciT130I | CCWGG | 1 cut(s) | 372 |
| BcoDI | GTCTC | 3 cut(s) | 204, 703, 747 |
| BfmI | CTRYAG | 1 cut(s) | 402 |
| BfrI | CTTAAG | 1 cut(s) | 413 |
| BisI | GCNGC | 4 cut(s) | 105, 108, 111, 708 |
| BlsI | GCNGC | 4 cut(s) | 106, 109, 112, 709 |
| Bme1390I | CCNGG | 1 cut(s) | 372 |
| Bme18I | GGWCC | 2 cut(s) | 319, 626 |
| BmeT110I | CYCGRG | 1 cut(s) | 558 |
| BmgT120I | GGNCC | 3 cut(s) | 319, 368, 626 |
| BmiI | GGNNCC | 1 cut(s) | 271 |
| BmrFI | CCNGG | 1 cut(s) | 372 |
| BmsI | GCATC | 2 cut(s) | 134, 427 |
| BpiI | GAAGAC | 1 cut(s) | 231 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 184, 216 |
| Bpu10I | CCTNAGC | 2 cut(s) | 481, 791 |
| Bsa29I | ATCGAT | 1 cut(s) | 457 |
| BsaAI | YACGTR | 1 cut(s) | 57 |
| BsaHI | GRCGYC | 1 cut(s) | 362 |
| BsaI | GGTCTC | 1 cut(s) | 204 |
| BsaJI | CCNNGG | 2 cut(s) | 150, 371 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 192 |
| Bse1I | ACTGG | 2 cut(s) | 337, 433 |
| BseBI | CCWGG | 1 cut(s) | 372 |
| BseCI | ATCGAT | 1 cut(s) | 457 |
| BseDI | CCNNGG | 2 cut(s) | 150, 371 |
| BseGI | GGATG | 1 cut(s) | 146 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 192 |
| BseMII | CTCAG | 3 cut(s) | 441, 495, 714 |
| BseNI | ACTGG | 2 cut(s) | 337, 433 |
| BseRI | GAGGAG | 1 cut(s) | 546 |
| BseSI | GKGCMC | 2 cut(s) | 353, 739 |
| BseXI | GCAGC | 4 cut(s) | 97, 116, 119, 719 |
| BseYI | CCCAGC | 1 cut(s) | 462 |
| BsgI | GTGCAG | 1 cut(s) | 123 |
| BshFI | GGCC | 2 cut(s) | 155, 370 |
| BshVI | ATCGAT | 1 cut(s) | 457 |
| BsiHKAI | GWGCWC | 3 cut(s) | 260, 731, 739 |
| BsiHKCI | CYCGRG | 1 cut(s) | 558 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 192 |
| BsmAI | GTCTC | 3 cut(s) | 204, 703, 747 |
| BsmI | GAATGC | 1 cut(s) | 660 |
| BsnI | GGCC | 2 cut(s) | 155, 370 |
| Bso31I | GGTCTC | 1 cut(s) | 204 |
| BsoBI | CYCGRG | 1 cut(s) | 558 |
| Bsp1286I | GDGCHC | 4 cut(s) | 260, 353, 731, 739 |
| Bsp143I | GATC | 4 cut(s) | 454, 458, 535, 670 |
| Bsp19I | CCATGG | 1 cut(s) | 150 |
| BspACI | CCGC | 1 cut(s) | 385 |
| BspANI | GGCC | 2 cut(s) | 155, 370 |
| BspCNI | CTCAG | 3 cut(s) | 442, 494, 713 |
| BspDI | ATCGAT | 1 cut(s) | 457 |
| BspLI | GGNNCC | 1 cut(s) | 271 |
| BspMAI | CTGCAG | 1 cut(s) | 406 |
| BspPI | GGATC | 4 cut(s) | 453, 462, 543, 678 |
| BspTI | CTTAAG | 1 cut(s) | 413 |
| BspTNI | GGTCTC | 1 cut(s) | 204 |
| BsrI | ACTGG | 2 cut(s) | 337, 433 |
| BssECI | CCNNGG | 2 cut(s) | 150, 371 |
| BssMI | GATC | 4 cut(s) | 454, 458, 535, 670 |
| BssNI | GRCGYC | 1 cut(s) | 362 |
| BssT1I | CCWWGG | 1 cut(s) | 150 |
| Bst2UI | CCWGG | 1 cut(s) | 372 |
| Bst4CI | ACNGT | 3 cut(s) | 27, 530, 741 |
| BstACI | GRCGYC | 1 cut(s) | 362 |
| BstAFI | CTTAAG | 1 cut(s) | 413 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 110 |
| BstBAI | YACGTR | 1 cut(s) | 57 |
| BstC8I | GCNNGC | 1 cut(s) | 660 |
| BstDEI | CTNAG | 5 cut(s) | 450, 481, 700, 791, 801 |
| BstDSI | CCRYGG | 1 cut(s) | 150 |
| BstEII | GGTNACC | 1 cut(s) | 614 |
| BstF5I | GGATG | 1 cut(s) | 146 |
| BstKTI | GATC | 4 cut(s) | 457, 461, 538, 673 |
| BstMAI | GTCTC | 3 cut(s) | 204, 703, 747 |
| BstMBI | GATC | 4 cut(s) | 454, 458, 535, 670 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 110, 348 |
| BstNI | CCWGG | 1 cut(s) | 372 |
| BstPI | GGTNACC | 1 cut(s) | 614 |
| BstSCI | CCNGG | 1 cut(s) | 370 |
| BstSFI | CTRYAG | 1 cut(s) | 402 |
| BstSLI | GKGCMC | 2 cut(s) | 353, 739 |
| BstV1I | GCAGC | 4 cut(s) | 97, 116, 119, 719 |
| BstV2I | GAAGAC | 1 cut(s) | 231 |
| BstX2I | RGATCY | 2 cut(s) | 535, 670 |
| BstYI | RGATCY | 2 cut(s) | 535, 670 |
| Bsu15I | ATCGAT | 1 cut(s) | 457 |
| BsuRI | GGCC | 2 cut(s) | 155, 370 |
| BsuTUI | ATCGAT | 1 cut(s) | 457 |
| BtgI | CCRYGG | 1 cut(s) | 150 |
| BtsCI | GGATG | 1 cut(s) | 146 |
| BtsIMutI | CAGTG | 5 cut(s) | 23, 285, 344, 535, 737 |
| Cac8I | GCNNGC | 1 cut(s) | 660 |
| CaiI | CAGNNNCTG | 1 cut(s) | 110 |
| Cfr13I | GGNCC | 3 cut(s) | 319, 368, 626 |
| ClaI | ATCGAT | 1 cut(s) | 457 |
| Csp6I | GTAC | 1 cut(s) | 407 |
| CviAII | CATG | 5 cut(s) | 45, 122, 151, 469, 808 |
| CviQI | GTAC | 1 cut(s) | 407 |
| DdeI | CTNAG | 5 cut(s) | 450, 481, 700, 791, 801 |
| DpnI | GATC | 4 cut(s) | 456, 460, 537, 672 |
| DpnII | GATC | 4 cut(s) | 454, 458, 535, 670 |
| Ecl136II | GAGCTC | 1 cut(s) | 258 |
| Eco130I | CCWWGG | 1 cut(s) | 150 |
| Eco24I | GRGCYC | 1 cut(s) | 260 |
| Eco31I | GGTCTC | 1 cut(s) | 204 |
| Eco47I | GGWCC | 2 cut(s) | 319, 626 |
| Eco53kI | GAGCTC | 1 cut(s) | 258 |
| Eco88I | CYCGRG | 1 cut(s) | 558 |
| Eco91I | GGTNACC | 1 cut(s) | 614 |
| EcoICRI | GAGCTC | 1 cut(s) | 258 |
| EcoO65I | GGTNACC | 1 cut(s) | 614 |
| EcoRII | CCWGG | 1 cut(s) | 370 |
| EcoT14I | CCWWGG | 1 cut(s) | 150 |
| EcoT22I | ATGCAT | 1 cut(s) | 127 |
| EcoT38I | GRGCYC | 1 cut(s) | 260 |
| ErhI | CCWWGG | 1 cut(s) | 150 |
| FaeI | CATG | 5 cut(s) | 48, 125, 154, 472, 811 |
| FatI | CATG | 5 cut(s) | 44, 121, 150, 468, 807 |
| Fnu4HI | GCNGC | 4 cut(s) | 105, 108, 111, 708 |
| FokI | GGATG | 1 cut(s) | 133 |
| FriOI | GRGCYC | 1 cut(s) | 260 |
| Fsp4HI | GCNGC | 4 cut(s) | 105, 108, 111, 708 |
| GluI | GCNGC | 4 cut(s) | 105, 108, 111, 708 |
| GsaI | CCCAGC | 1 cut(s) | 466 |
| HaeIII | GGCC | 2 cut(s) | 155, 370 |
| Hin1I | GRCGYC | 1 cut(s) | 362 |
| Hin1II | CATG | 5 cut(s) | 48, 125, 154, 472, 811 |
| HinfI | GANTC | 4 cut(s) | 311, 398, 472, 764 |
| Hpy166II | GTNNAC | 2 cut(s) | 649, 737 |
| Hpy188I | TCNGA | 6 cut(s) | 451, 607, 639, 703, 760, 773 |
| Hpy188III | TCNNGA | 5 cut(s) | 87, 358, 523, 539, 560 |
| Hpy8I | GTNNAC | 2 cut(s) | 649, 737 |
| HpyAV | CCTTC | 1 cut(s) | 253 |
| HpyCH4III | ACNGT | 3 cut(s) | 27, 530, 741 |
| HpyCH4IV | ACGT | 2 cut(s) | 56, 362 |
| HpyCH4V | TGCA | 7 cut(s) | 104, 125, 404, 440, 658, 683, 737 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 110, 348 |
| HpyF3I | CTNAG | 5 cut(s) | 450, 481, 700, 791, 801 |
| HpySE526I | ACGT | 2 cut(s) | 56, 362 |
| Hsp92I | GRCGYC | 1 cut(s) | 362 |
| Hsp92II | CATG | 5 cut(s) | 48, 125, 154, 472, 811 |
| Kzo9I | GATC | 4 cut(s) | 454, 458, 535, 670 |
| LmnI | GCTCC | 1 cut(s) | 255 |
| Lsp1109I | GCAGC | 4 cut(s) | 97, 116, 119, 719 |
| LweI | GCATC | 2 cut(s) | 134, 427 |
| MaeII | ACGT | 2 cut(s) | 56, 362 |
| MaeIII | GTNAC | 2 cut(s) | 21, 614 |
| MalI | GATC | 4 cut(s) | 456, 460, 537, 672 |
| MboI | GATC | 4 cut(s) | 454, 458, 535, 670 |
| MboII | GAAGA | 5 cut(s) | 236, 238, 560, 569, 582 |
| MflI | RGATCY | 2 cut(s) | 535, 670 |
| MhlI | GDGCHC | 4 cut(s) | 260, 353, 731, 739 |
| MluCI | AATT | 5 cut(s) | 215, 326, 573, 621, 641 |
| MlyI | GAGTC | 1 cut(s) | 407 |
| MmeI | TCCRAC | 1 cut(s) | 648 |
| MnlI | CCTC | 8 cut(s) | 153, 186, 445, 490, 564, 567, 697, 813 |
| Mph1103I | ATGCAT | 1 cut(s) | 127 |
| MseI | TTAA | 4 cut(s) | 158, 182, 414, 749 |
| MslI | CAYNNNNRTG | 1 cut(s) | 55 |
| MspA1I | CMGCKG | 1 cut(s) | 110 |
| MspCI | CTTAAG | 1 cut(s) | 413 |
| MspR9I | CCNGG | 1 cut(s) | 372 |
| Mva1269I | GAATGC | 1 cut(s) | 660 |
| MvaI | CCWGG | 1 cut(s) | 372 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 110, 348 |
| NcoI | CCATGG | 1 cut(s) | 150 |
| NdeII | GATC | 4 cut(s) | 454, 458, 535, 670 |
| NlaIII | CATG | 5 cut(s) | 48, 125, 154, 472, 811 |
| NlaIV | GGNNCC | 1 cut(s) | 271 |
| NmuCI | GTSAC | 1 cut(s) | 21 |
| NsiI | ATGCAT | 1 cut(s) | 127 |
| PaeR7I | CTCGAG | 1 cut(s) | 558 |
| PctI | GAATGC | 1 cut(s) | 660 |
| PfeI | GAWTC | 3 cut(s) | 311, 472, 764 |
| PkrI | GCNGC | 4 cut(s) | 106, 109, 112, 709 |
| PleI | GAGTC | 1 cut(s) | 406 |
| PpsI | GAGTC | 1 cut(s) | 406 |
| Ppu21I | YACGTR | 1 cut(s) | 57 |
| Psp124BI | GAGCTC | 1 cut(s) | 260 |
| Psp6I | CCWGG | 1 cut(s) | 370 |
| PspEI | GGTNACC | 1 cut(s) | 614 |
| PspFI | CCCAGC | 1 cut(s) | 462 |
| PspGI | CCWGG | 1 cut(s) | 370 |
| PspN4I | GGNNCC | 1 cut(s) | 271 |
| PspPI | GGNCC | 3 cut(s) | 319, 368, 626 |
| PstI | CTGCAG | 1 cut(s) | 406 |
| PstNI | CAGNNNCTG | 1 cut(s) | 110 |
| PsuI | RGATCY | 2 cut(s) | 535, 670 |
| PvuII | CAGCTG | 1 cut(s) | 110 |
| RsaI | GTAC | 1 cut(s) | 408 |
| RsaNI | GTAC | 1 cut(s) | 407 |
| RseI | CAYNNNNRTG | 1 cut(s) | 55 |
| SacI | GAGCTC | 1 cut(s) | 260 |
| SaqAI | TTAA | 4 cut(s) | 158, 182, 414, 749 |
| SatI | GCNGC | 4 cut(s) | 105, 108, 111, 708 |
| Sau3AI | GATC | 4 cut(s) | 454, 458, 535, 670 |
| Sau96I | GGNCC | 3 cut(s) | 319, 368, 626 |
| SchI | GAGTC | 1 cut(s) | 407 |
| ScrFI | CCNGG | 1 cut(s) | 372 |
| SduI | GDGCHC | 4 cut(s) | 260, 353, 731, 739 |
| SfaNI | GCATC | 2 cut(s) | 134, 427 |
| SfcI | CTRYAG | 1 cut(s) | 402 |
| Sfr274I | CTCGAG | 1 cut(s) | 558 |
| SinI | GGWCC | 2 cut(s) | 319, 626 |
| SlaI | CTCGAG | 1 cut(s) | 558 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 55 |
| SmlI | CTYRAG | 2 cut(s) | 413, 558 |
| SmoI | CTYRAG | 2 cut(s) | 413, 558 |
| Sse9I | AATT | 5 cut(s) | 215, 326, 573, 621, 641 |
| SsiI | CCGC | 1 cut(s) | 385 |
| SstI | GAGCTC | 1 cut(s) | 260 |
| StyD4I | CCNGG | 1 cut(s) | 370 |
| StyI | CCWWGG | 1 cut(s) | 150 |
| TaaI | ACNGT | 3 cut(s) | 27, 530, 741 |
| TaiI | ACGT | 2 cut(s) | 59, 365 |
| TaqI | TCGA | 2 cut(s) | 457, 559 |
| TaqII | GACCGA | 1 cut(s) | 643 |
| TasI | AATT | 5 cut(s) | 215, 326, 573, 621, 641 |
| TfiI | GAWTC | 3 cut(s) | 311, 472, 764 |
| Tru1I | TTAA | 4 cut(s) | 158, 182, 414, 749 |
| Tru9I | TTAA | 4 cut(s) | 158, 182, 414, 749 |
| TscAI | CASTG | 5 cut(s) | 30, 292, 344, 535, 744 |
| TseFI | GTSAC | 1 cut(s) | 21 |
| TseI | GCWGC | 4 cut(s) | 104, 107, 110, 707 |
| Tsp45I | GTSAC | 1 cut(s) | 21 |
| TspDTI | ATGAA | 6 cut(s) | 33, 39, 110, 238, 485, 824 |
| TspGWI | ACGGA | 4 cut(s) | 268, 282, 332, 666 |
| TspRI | CASTG | 5 cut(s) | 30, 292, 344, 535, 744 |
| Vha464I | CTTAAG | 1 cut(s) | 413 |
| VneI | GTGCAC | 1 cut(s) | 735 |
| VpaK11BI | GGWCC | 2 cut(s) | 319, 626 |
| XapI | RAATTY | 2 cut(s) | 573, 641 |
| XhoI | CTCGAG | 1 cut(s) | 558 |
| ZraI | GACGTC | 1 cut(s) | 363 |
| Zsp2I | ATGCAT | 1 cut(s) | 127 |