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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 439 |
| AccI | GTMKAC | 1 cut(s) | 654 |
| AccIII | TCCGGA | 1 cut(s) | 189 |
| AciI | CCGC | 3 cut(s) | 320, 524, 834 |
| AclWI | GGATC | 2 cut(s) | 474, 643 |
| AcsI | RAATTY | 2 cut(s) | 11, 1069 |
| AfaI | GTAC | 4 cut(s) | 46, 73, 144, 728 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 818, 1114 |
| AflIII | ACRYGT | 1 cut(s) | 404 |
| AgsI | TTSAA | 6 cut(s) | 198, 283, 583, 593, 691, 748 |
| AjnI | CCWGG | 2 cut(s) | 863, 1087 |
| AluBI | AGCT | 7 cut(s) | 59, 233, 478, 566, 586, 764, 826 |
| AluI | AGCT | 7 cut(s) | 59, 233, 478, 566, 586, 764, 826 |
| Alw21I | GWGCWC | 1 cut(s) | 902 |
| AlwI | GGATC | 2 cut(s) | 474, 643 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 931 |
| Ama87I | CYCGRG | 1 cut(s) | 737 |
| Aor13HI | TCCGGA | 1 cut(s) | 189 |
| AoxI | GGCC | 3 cut(s) | 37, 555, 997 |
| ApeKI | GCWGC | 7 cut(s) | 59, 155, 233, 273, 550, 575, 586 |
| ApoI | RAATTY | 2 cut(s) | 11, 1069 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 917, 1161 |
| AspS9I | GGNCC | 5 cut(s) | 38, 597, 972, 1105, 1180 |
| AsuHPI | GGTGA | 5 cut(s) | 20, 38, 182, 313, 391 |
| AsuNHI | GCTAGC | 1 cut(s) | 347 |
| AvaI | CYCGRG | 1 cut(s) | 737 |
| AvaII | GGWCC | 4 cut(s) | 597, 972, 1105, 1180 |
| BaeGI | GKGCMC | 1 cut(s) | 442 |
| BanI | GGYRCC | 1 cut(s) | 439 |
| BbsI | GAAGAC | 2 cut(s) | 389, 755 |
| Bbv12I | GWGCWC | 1 cut(s) | 902 |
| BbvI | GCAGC | 7 cut(s) | 46, 167, 220, 260, 562, 573, 587 |
| BccI | CCATC | 7 cut(s) | 161, 258, 370, 608, 886, 963, 1047 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 326, 360 |
| BciT130I | CCWGG | 2 cut(s) | 865, 1089 |
| BciVI | GTATCC | 1 cut(s) | 553 |
| BfaI | CTAG | 5 cut(s) | 146, 348, 411, 618, 699 |
| BfmI | CTRYAG | 1 cut(s) | 559 |
| BfuI | GTATCC | 1 cut(s) | 553 |
| BisI | GCNGC | 7 cut(s) | 60, 156, 234, 274, 551, 576, 587 |
| BlsI | GCNGC | 7 cut(s) | 61, 157, 235, 275, 552, 577, 588 |
| BmcAI | AGTACT | 2 cut(s) | 73, 144 |
| Bme1390I | CCNGG | 2 cut(s) | 865, 1089 |
| Bme18I | GGWCC | 4 cut(s) | 597, 972, 1105, 1180 |
| BmeT110I | CYCGRG | 1 cut(s) | 737 |
| BmgT120I | GGNCC | 5 cut(s) | 38, 597, 972, 1105, 1180 |
| BmiI | GGNNCC | 2 cut(s) | 441, 1182 |
| BmrFI | CCNGG | 2 cut(s) | 865, 1089 |
| BmsI | GCATC | 4 cut(s) | 221, 685, 758, 838 |
| BmtI | GCTAGC | 1 cut(s) | 351 |
| BpiI | GAAGAC | 2 cut(s) | 389, 755 |
| BpuEI | CTTGAG | 2 cut(s) | 247, 867 |
| BsaBI | GATNNNNATC | 3 cut(s) | 211, 728, 772 |
| BsaJI | CCNNGG | 3 cut(s) | 736, 864, 1137 |
| BsaWI | WCCGGW | 1 cut(s) | 189 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 818, 1114 |
| Bse1I | ACTGG | 1 cut(s) | 757 |
| Bse8I | GATNNNNATC | 3 cut(s) | 211, 728, 772 |
| BseAI | TCCGGA | 1 cut(s) | 189 |
| BseBI | CCWGG | 2 cut(s) | 865, 1089 |
| BseDI | CCNNGG | 3 cut(s) | 736, 864, 1137 |
| BseGI | GGATG | 6 cut(s) | 10, 187, 269, 729, 773, 974 |
| BseJI | GATNNNNATC | 3 cut(s) | 211, 728, 772 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 818, 1114 |
| BseNI | ACTGG | 1 cut(s) | 757 |
| BseSI | GKGCMC | 1 cut(s) | 442 |
| BseXI | GCAGC | 7 cut(s) | 46, 167, 220, 260, 562, 573, 587 |
| BsgI | GTGCAG | 1 cut(s) | 174 |
| BshFI | GGCC | 3 cut(s) | 39, 557, 999 |
| BshNI | GGYRCC | 1 cut(s) | 439 |
| BsiHKAI | GWGCWC | 1 cut(s) | 902 |
| BsiHKCI | CYCGRG | 1 cut(s) | 737 |
| BsiSI | CCGG | 1 cut(s) | 190 |
| BslFI | GGGAC | 1 cut(s) | 641 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 818, 1114 |
| BsmFI | GGGAC | 1 cut(s) | 641 |
| BsmI | GAATGC | 1 cut(s) | 275 |
| BsnI | GGCC | 3 cut(s) | 39, 557, 999 |
| BsoBI | CYCGRG | 1 cut(s) | 737 |
| Bsp1286I | GDGCHC | 2 cut(s) | 442, 902 |
| Bsp13I | TCCGGA | 1 cut(s) | 189 |
| Bsp1407I | TGTACA | 1 cut(s) | 726 |
| Bsp143I | GATC | 4 cut(s) | 466, 471, 635, 773 |
| BspACI | CCGC | 3 cut(s) | 320, 524, 834 |
| BspANI | GGCC | 3 cut(s) | 39, 557, 999 |
| BspEI | TCCGGA | 1 cut(s) | 189 |
| BspLI | GGNNCC | 2 cut(s) | 441, 1182 |
| BspOI | GCTAGC | 1 cut(s) | 351 |
| BspPI | GGATC | 2 cut(s) | 474, 643 |
| BspT107I | GGYRCC | 1 cut(s) | 439 |
| BsrGI | TGTACA | 1 cut(s) | 726 |
| BsrI | ACTGG | 1 cut(s) | 757 |
| BssECI | CCNNGG | 3 cut(s) | 736, 864, 1137 |
| BssMI | GATC | 4 cut(s) | 466, 471, 635, 773 |
| BssT1I | CCWWGG | 1 cut(s) | 1137 |
| Bst2UI | CCWGG | 2 cut(s) | 865, 1089 |
| Bst4CI | ACNGT | 4 cut(s) | 76, 670, 794, 927 |
| Bst6I | CTCTTC | 2 cut(s) | 78, 278 |
| BstAUI | TGTACA | 1 cut(s) | 726 |
| BstC8I | GCNNGC | 2 cut(s) | 349, 555 |
| BstDEI | CTNAG | 2 cut(s) | 567, 943 |
| BstF5I | GGATG | 6 cut(s) | 10, 187, 269, 729, 773, 974 |
| BstKTI | GATC | 4 cut(s) | 469, 474, 638, 776 |
| BstMBI | GATC | 4 cut(s) | 466, 471, 635, 773 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 563, 572 |
| BstNI | CCWGG | 2 cut(s) | 865, 1089 |
| BstNSI | RCATGY | 1 cut(s) | 408 |
| BstSCI | CCNGG | 2 cut(s) | 863, 1087 |
| BstSFI | CTRYAG | 1 cut(s) | 559 |
| BstSLI | GKGCMC | 1 cut(s) | 442 |
| BstV1I | GCAGC | 7 cut(s) | 46, 167, 220, 260, 562, 573, 587 |
| BstV2I | GAAGAC | 2 cut(s) | 389, 755 |
| BsuI | GTATCC | 1 cut(s) | 553 |
| BsuRI | GGCC | 3 cut(s) | 39, 557, 999 |
| BtsCI | GGATG | 6 cut(s) | 10, 187, 269, 729, 773, 974 |
| BtsIMutI | CAGTG | 2 cut(s) | 675, 988 |
| Cac8I | GCNNGC | 2 cut(s) | 349, 555 |
| CaiI | CAGNNNCTG | 1 cut(s) | 931 |
| Cfr13I | GGNCC | 5 cut(s) | 38, 597, 972, 1105, 1180 |
| Csp6I | GTAC | 4 cut(s) | 45, 72, 143, 727 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 850, 885 |
| CviAII | CATG | 9 cut(s) | 362, 392, 405, 419, 547, 604, 815, 956, 1099 |
| CviQI | GTAC | 4 cut(s) | 45, 72, 143, 727 |
| DdeI | CTNAG | 2 cut(s) | 567, 943 |
| DpnI | GATC | 4 cut(s) | 468, 473, 637, 775 |
| DpnII | GATC | 4 cut(s) | 466, 471, 635, 773 |
| DraI | TTTAAA | 3 cut(s) | 718, 760, 804 |
| Eam1104I | CTCTTC | 2 cut(s) | 78, 278 |
| EarI | CTCTTC | 2 cut(s) | 78, 278 |
| Eco130I | CCWWGG | 1 cut(s) | 1137 |
| Eco147I | AGGCCT | 2 cut(s) | 557, 999 |
| Eco47I | GGWCC | 4 cut(s) | 597, 972, 1105, 1180 |
| Eco88I | CYCGRG | 1 cut(s) | 737 |
| EcoRII | CCWGG | 2 cut(s) | 863, 1087 |
| EcoT14I | CCWWGG | 1 cut(s) | 1137 |
| ErhI | CCWWGG | 1 cut(s) | 1137 |
| FaeI | CATG | 9 cut(s) | 365, 395, 408, 422, 550, 607, 818, 959, 1102 |
| FaqI | GGGAC | 1 cut(s) | 641 |
| FatI | CATG | 9 cut(s) | 361, 391, 404, 418, 546, 603, 814, 955, 1098 |
| FauI | CCCGC | 1 cut(s) | 517 |
| FauNDI | CATATG | 1 cut(s) | 877 |
| FblI | GTMKAC | 1 cut(s) | 654 |
| Fnu4HI | GCNGC | 7 cut(s) | 60, 156, 234, 274, 551, 576, 587 |
| FokI | GGATG | 6 cut(s) | 17, 194, 276, 736, 780, 981 |
| Fsp4HI | GCNGC | 7 cut(s) | 60, 156, 234, 274, 551, 576, 587 |
| FspBI | CTAG | 5 cut(s) | 146, 348, 411, 618, 699 |
| GluI | GCNGC | 7 cut(s) | 60, 156, 234, 274, 551, 576, 587 |
| HaeIII | GGCC | 3 cut(s) | 39, 557, 999 |
| HapII | CCGG | 1 cut(s) | 190 |
| Hin1II | CATG | 9 cut(s) | 365, 395, 408, 422, 550, 607, 818, 959, 1102 |
| HincII | GTYRAC | 3 cut(s) | 369, 424, 1131 |
| HindII | GTYRAC | 3 cut(s) | 369, 424, 1131 |
| HinfI | GANTC | 6 cut(s) | 128, 365, 500, 808, 905, 1016 |
| HpaII | CCGG | 1 cut(s) | 190 |
| HphI | GGTGA | 5 cut(s) | 20, 38, 182, 313, 391 |
| Hpy166II | GTNNAC | 7 cut(s) | 47, 369, 424, 655, 673, 821, 1131 |
| Hpy188I | TCNGA | 4 cut(s) | 133, 166, 471, 640 |
| Hpy188III | TCNNGA | 3 cut(s) | 190, 226, 485 |
| Hpy8I | GTNNAC | 7 cut(s) | 47, 369, 424, 655, 673, 821, 1131 |
| HpyAV | CCTTC | 2 cut(s) | 343, 1096 |
| HpyCH4III | ACNGT | 4 cut(s) | 76, 670, 794, 927 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 563, 572 |
| HpyF3I | CTNAG | 2 cut(s) | 567, 943 |
| Hsp92II | CATG | 9 cut(s) | 365, 395, 408, 422, 550, 607, 818, 959, 1102 |
| Kpn2I | TCCGGA | 1 cut(s) | 189 |
| Kzo9I | GATC | 4 cut(s) | 466, 471, 635, 773 |
| LmnI | GCTCC | 2 cut(s) | 607, 831 |
| Lsp1109I | GCAGC | 7 cut(s) | 46, 167, 220, 260, 562, 573, 587 |
| LweI | GCATC | 4 cut(s) | 221, 685, 758, 838 |
| MaeI | CTAG | 5 cut(s) | 146, 348, 411, 618, 699 |
| MaeIII | GTNAC | 1 cut(s) | 983 |
| MalI | GATC | 4 cut(s) | 468, 473, 637, 775 |
| MboI | GATC | 4 cut(s) | 466, 471, 635, 773 |
| MboII | GAAGA | 5 cut(s) | 95, 119, 295, 394, 760 |
| MhlI | GDGCHC | 2 cut(s) | 442, 902 |
| MluCI | AATT | 2 cut(s) | 11, 1069 |
| MlyI | GAGTC | 4 cut(s) | 374, 817, 899, 1025 |
| MmeI | TCCRAC | 1 cut(s) | 46 |
| MroI | TCCGGA | 1 cut(s) | 189 |
| MroXI | GAANNNNTTC | 2 cut(s) | 917, 1161 |
| MseI | TTAA | 4 cut(s) | 239, 717, 759, 803 |
| MspA1I | CMGCKG | 1 cut(s) | 524 |
| MspI | CCGG | 1 cut(s) | 190 |
| MspR9I | CCNGG | 2 cut(s) | 865, 1089 |
| Mva1269I | GAATGC | 1 cut(s) | 275 |
| MvaI | CCWGG | 2 cut(s) | 865, 1089 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 563, 572 |
| NdeI | CATATG | 1 cut(s) | 877 |
| NdeII | GATC | 4 cut(s) | 466, 471, 635, 773 |
| NheI | GCTAGC | 1 cut(s) | 347 |
| NlaIII | CATG | 9 cut(s) | 365, 395, 408, 422, 550, 607, 818, 959, 1102 |
| NlaIV | GGNNCC | 2 cut(s) | 441, 1182 |
| NmuCI | GTSAC | 1 cut(s) | 983 |
| NspI | RCATGY | 1 cut(s) | 408 |
| PceI | AGGCCT | 2 cut(s) | 557, 999 |
| PciI | ACATGT | 1 cut(s) | 404 |
| PctI | GAATGC | 1 cut(s) | 275 |
| PdmI | GAANNNNTTC | 2 cut(s) | 917, 1161 |
| PfeI | GAWTC | 2 cut(s) | 128, 500 |
| PkrI | GCNGC | 7 cut(s) | 61, 157, 235, 275, 552, 577, 588 |
| PleI | GAGTC | 4 cut(s) | 373, 816, 899, 1024 |
| PpsI | GAGTC | 4 cut(s) | 373, 816, 899, 1024 |
| PscI | ACATGT | 1 cut(s) | 404 |
| Psp6I | CCWGG | 2 cut(s) | 863, 1087 |
| PspGI | CCWGG | 2 cut(s) | 863, 1087 |
| PspN4I | GGNNCC | 2 cut(s) | 441, 1182 |
| PspPI | GGNCC | 5 cut(s) | 38, 597, 972, 1105, 1180 |
| PstNI | CAGNNNCTG | 1 cut(s) | 931 |
| RsaI | GTAC | 4 cut(s) | 46, 73, 144, 728 |
| RsaNI | GTAC | 4 cut(s) | 45, 72, 143, 727 |
| SaqAI | TTAA | 4 cut(s) | 239, 717, 759, 803 |
| SatI | GCNGC | 7 cut(s) | 60, 156, 234, 274, 551, 576, 587 |
| Sau3AI | GATC | 4 cut(s) | 466, 471, 635, 773 |
| Sau96I | GGNCC | 5 cut(s) | 38, 597, 972, 1105, 1180 |
| ScaI | AGTACT | 2 cut(s) | 73, 144 |
| SchI | GAGTC | 4 cut(s) | 374, 817, 899, 1025 |
| ScrFI | CCNGG | 2 cut(s) | 865, 1089 |
| SduI | GDGCHC | 2 cut(s) | 442, 902 |
| SfaNI | GCATC | 4 cut(s) | 221, 685, 758, 838 |
| SfcI | CTRYAG | 1 cut(s) | 559 |
| SinI | GGWCC | 4 cut(s) | 597, 972, 1105, 1180 |
| SmlI | CTYRAG | 2 cut(s) | 226, 882 |
| SmoI | CTYRAG | 2 cut(s) | 226, 882 |
| Sse9I | AATT | 2 cut(s) | 11, 1069 |
| SseBI | AGGCCT | 2 cut(s) | 557, 999 |
| SsiI | CCGC | 3 cut(s) | 320, 524, 834 |
| SspMI | CTAG | 5 cut(s) | 146, 348, 411, 618, 699 |
| StuI | AGGCCT | 2 cut(s) | 557, 999 |
| StyD4I | CCNGG | 2 cut(s) | 863, 1087 |
| StyI | CCWWGG | 1 cut(s) | 1137 |
| TaaI | ACNGT | 4 cut(s) | 76, 670, 794, 927 |
| TaqI | TCGA | 2 cut(s) | 96, 336 |
| TasI | AATT | 2 cut(s) | 11, 1069 |
| TatI | WGTACW | 4 cut(s) | 44, 71, 142, 726 |
| TfiI | GAWTC | 2 cut(s) | 128, 500 |
| Tru1I | TTAA | 4 cut(s) | 239, 717, 759, 803 |
| Tru9I | TTAA | 4 cut(s) | 239, 717, 759, 803 |
| TscAI | CASTG | 2 cut(s) | 675, 988 |
| TseFI | GTSAC | 1 cut(s) | 983 |
| TseI | GCWGC | 7 cut(s) | 59, 155, 233, 273, 550, 575, 586 |
| Tsp45I | GTSAC | 1 cut(s) | 983 |
| TspDTI | ATGAA | 3 cut(s) | 120, 407, 1115 |
| TspRI | CASTG | 2 cut(s) | 675, 988 |
| VpaK11BI | GGWCC | 4 cut(s) | 597, 972, 1105, 1180 |
| XapI | RAATTY | 2 cut(s) | 11, 1069 |
| XceI | RCATGY | 1 cut(s) | 408 |
| XmiI | GTMKAC | 1 cut(s) | 654 |
| XmnI | GAANNNNTTC | 2 cut(s) | 917, 1161 |
| XspI | CTAG | 5 cut(s) | 146, 348, 411, 618, 699 |
| ZrmI | AGTACT | 2 cut(s) | 73, 144 |