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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 666, 1217 |
| AccII | CGCG | 2 cut(s) | 52, 58 |
| AciI | CCGC | 6 cut(s) | 50, 52, 56, 58, 77, 761 |
| AclWI | GGATC | 4 cut(s) | 594, 983, 996, 1240 |
| AcoI | YGGCCR | 1 cut(s) | 53 |
| AfaI | GTAC | 4 cut(s) | 178, 186, 212, 1250 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 71, 308, 1156 |
| AflII | CTTAAG | 1 cut(s) | 529 |
| AgsI | TTSAA | 8 cut(s) | 245, 254, 329, 480, 563, 596, 614, 938 |
| AjnI | CCWGG | 1 cut(s) | 1331 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 428, 460, 822, 854 |
| AluBI | AGCT | 5 cut(s) | 136, 145, 617, 674, 1285 |
| AluI | AGCT | 5 cut(s) | 136, 145, 617, 674, 1285 |
| Alw21I | GWGCWC | 1 cut(s) | 915 |
| Alw26I | GTCTC | 1 cut(s) | 1054 |
| AlwI | GGATC | 4 cut(s) | 594, 983, 996, 1240 |
| AoxI | GGCC | 5 cut(s) | 53, 59, 1002, 1158, 1269 |
| ApeKI | GCWGC | 3 cut(s) | 94, 145, 1222 |
| AspS9I | GGNCC | 3 cut(s) | 217, 1003, 1087 |
| AsuC2I | CCSGG | 2 cut(s) | 66, 1150 |
| AsuHPI | GGTGA | 1 cut(s) | 137 |
| AvaII | GGWCC | 2 cut(s) | 217, 1087 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 168, 201 |
| BamHI | GGATCC | 1 cut(s) | 988 |
| BanII | GRGCYC | 1 cut(s) | 1114 |
| BbsI | GAAGAC | 3 cut(s) | 261, 551, 1038 |
| Bbv12I | GWGCWC | 1 cut(s) | 915 |
| BbvI | GCAGC | 3 cut(s) | 106, 132, 1209 |
| BccI | CCATC | 3 cut(s) | 116, 371, 959 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 110, 144 |
| BciT130I | CCWGG | 1 cut(s) | 1333 |
| BclI | TGATCA | 3 cut(s) | 201, 718, 847 |
| BcnI | CCSGG | 2 cut(s) | 66, 1150 |
| BcoDI | GTCTC | 1 cut(s) | 1054 |
| BfaI | CTAG | 4 cut(s) | 498, 519, 671, 1080 |
| BfrI | CTTAAG | 1 cut(s) | 529 |
| BglII | AGATCT | 1 cut(s) | 1261 |
| BisI | GCNGC | 7 cut(s) | 50, 53, 56, 59, 95, 146, 1223 |
| BlpI | GCTNAGC | 1 cut(s) | 132 |
| BlsI | GCNGC | 7 cut(s) | 51, 54, 57, 60, 96, 147, 1224 |
| Bme1390I | CCNGG | 3 cut(s) | 66, 1150, 1333 |
| Bme18I | GGWCC | 2 cut(s) | 217, 1087 |
| BmgT120I | GGNCC | 3 cut(s) | 217, 1003, 1087 |
| BmiI | GGNNCC | 1 cut(s) | 990 |
| BmrFI | CCNGG | 3 cut(s) | 66, 1150, 1333 |
| BmsI | GCATC | 1 cut(s) | 118 |
| BpiI | GAAGAC | 3 cut(s) | 261, 551, 1038 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 132 |
| BpuEI | CTTGAG | 2 cut(s) | 345, 1067 |
| BpuMI | CCSGG | 2 cut(s) | 66, 1150 |
| Bsa29I | ATCGAT | 1 cut(s) | 120 |
| BsaBI | GATNNNNATC | 3 cut(s) | 666, 687, 717 |
| BsaJI | CCNNGG | 6 cut(s) | 50, 56, 271, 1090, 1161, 1331 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1251, 1281 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 71, 308, 1156 |
| Bse1I | ACTGG | 3 cut(s) | 514, 697, 1013 |
| Bse3DI | GCAATG | 1 cut(s) | 325 |
| Bse8I | GATNNNNATC | 3 cut(s) | 666, 687, 717 |
| BseBI | CCWGG | 1 cut(s) | 1333 |
| BseCI | ATCGAT | 1 cut(s) | 120 |
| BseDI | CCNNGG | 6 cut(s) | 50, 56, 271, 1090, 1161, 1331 |
| BseGI | GGATG | 3 cut(s) | 108, 518, 664 |
| BseJI | GATNNNNATC | 3 cut(s) | 666, 687, 717 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 71, 308, 1156 |
| BseMI | GCAATG | 1 cut(s) | 325 |
| BseMII | CTCAG | 1 cut(s) | 123 |
| BseNI | ACTGG | 3 cut(s) | 514, 697, 1013 |
| BseX3I | CGGCCG | 1 cut(s) | 53 |
| BseXI | GCAGC | 3 cut(s) | 106, 132, 1209 |
| BseYI | CCCAGC | 1 cut(s) | 1005 |
| Bsh1236I | CGCG | 2 cut(s) | 52, 58 |
| Bsh1285I | CGRYCG | 1 cut(s) | 56 |
| BshFI | GGCC | 5 cut(s) | 55, 61, 1004, 1160, 1271 |
| BshVI | ATCGAT | 1 cut(s) | 120 |
| BsiEI | CGRYCG | 1 cut(s) | 56 |
| BsiHKAI | GWGCWC | 1 cut(s) | 915 |
| BsiSI | CCGG | 3 cut(s) | 65, 992, 1150 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 71, 308, 1156 |
| BsmAI | GTCTC | 1 cut(s) | 1054 |
| BsmI | GAATGC | 1 cut(s) | 763 |
| BsnI | GGCC | 5 cut(s) | 55, 61, 1004, 1160, 1271 |
| Bsp1286I | GDGCHC | 2 cut(s) | 915, 1114 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 132 |
| Bsp19I | CCATGG | 2 cut(s) | 1090, 1161 |
| BspACI | CCGC | 6 cut(s) | 50, 52, 56, 58, 77, 761 |
| BspANI | GGCC | 5 cut(s) | 55, 61, 1004, 1160, 1271 |
| BspCNI | CTCAG | 1 cut(s) | 124 |
| BspDI | ATCGAT | 1 cut(s) | 120 |
| BspFNI | CGCG | 2 cut(s) | 52, 58 |
| BspHI | TCATGA | 2 cut(s) | 691, 721 |
| BspLI | GGNNCC | 1 cut(s) | 990 |
| BspPI | GGATC | 4 cut(s) | 594, 983, 996, 1240 |
| BspQI | GCTCTTC | 2 cut(s) | 84, 291 |
| BspTI | CTTAAG | 1 cut(s) | 529 |
| BsrDI | GCAATG | 1 cut(s) | 325 |
| BsrI | ACTGG | 3 cut(s) | 514, 697, 1013 |
| BssECI | CCNNGG | 6 cut(s) | 50, 56, 271, 1090, 1161, 1331 |
| BssT1I | CCWWGG | 3 cut(s) | 271, 1090, 1161 |
| Bst2UI | CCWGG | 1 cut(s) | 1333 |
| Bst4CI | ACNGT | 3 cut(s) | 495, 927, 1065 |
| Bst6I | CTCTTC | 7 cut(s) | 84, 291, 431, 639, 804, 894, 1100 |
| BstAFI | CTTAAG | 1 cut(s) | 529 |
| BstC8I | GCNNGC | 3 cut(s) | 536, 1283, 1386 |
| BstDEI | CTNAG | 2 cut(s) | 132, 487 |
| BstDSI | CCRYGG | 4 cut(s) | 50, 56, 1090, 1161 |
| BstF5I | GGATG | 3 cut(s) | 108, 518, 664 |
| BstFNI | CGCG | 2 cut(s) | 52, 58 |
| BstMAI | GTCTC | 1 cut(s) | 1054 |
| BstMCI | CGRYCG | 1 cut(s) | 56 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 55, 58, 142, 276, 1001 |
| BstNI | CCWGG | 1 cut(s) | 1333 |
| BstNSI | RCATGY | 1 cut(s) | 538 |
| BstSCI | CCNGG | 3 cut(s) | 64, 1148, 1331 |
| BstUI | CGCG | 2 cut(s) | 52, 58 |
| BstV1I | GCAGC | 3 cut(s) | 106, 132, 1209 |
| BstV2I | GAAGAC | 3 cut(s) | 261, 551, 1038 |
| BstX2I | RGATCY | 2 cut(s) | 988, 1261 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1097, 1289 |
| BstYI | RGATCY | 2 cut(s) | 988, 1261 |
| BstZI | CGGCCG | 1 cut(s) | 53 |
| Bsu15I | ATCGAT | 1 cut(s) | 120 |
| BsuRI | GGCC | 5 cut(s) | 55, 61, 1004, 1160, 1271 |
| BsuTUI | ATCGAT | 1 cut(s) | 120 |
| BtgI | CCRYGG | 4 cut(s) | 50, 56, 1090, 1161 |
| BtsCI | GGATG | 3 cut(s) | 108, 518, 664 |
| BtsI | GCAGTG | 3 cut(s) | 286, 508, 1102 |
| BtsIMutI | CAGTG | 4 cut(s) | 286, 508, 1020, 1102 |
| Cac8I | GCNNGC | 3 cut(s) | 536, 1283, 1386 |
| CciI | TCATGA | 2 cut(s) | 691, 721 |
| CciNI | GCGGCCGC | 1 cut(s) | 53 |
| Cfr13I | GGNCC | 3 cut(s) | 217, 1003, 1087 |
| Cfr42I | CCGCGG | 2 cut(s) | 53, 59 |
| ClaI | ATCGAT | 1 cut(s) | 120 |
| Csp6I | GTAC | 4 cut(s) | 177, 185, 211, 1249 |
| CviQI | GTAC | 4 cut(s) | 177, 185, 211, 1249 |
| DdeI | CTNAG | 2 cut(s) | 132, 487 |
| EaeI | YGGCCR | 1 cut(s) | 53 |
| EagI | CGGCCG | 1 cut(s) | 53 |
| Eam1104I | CTCTTC | 7 cut(s) | 84, 291, 431, 639, 804, 894, 1100 |
| EarI | CTCTTC | 7 cut(s) | 84, 291, 431, 639, 804, 894, 1100 |
| EclXI | CGGCCG | 1 cut(s) | 53 |
| Eco130I | CCWWGG | 3 cut(s) | 271, 1090, 1161 |
| Eco24I | GRGCYC | 1 cut(s) | 1114 |
| Eco32I | GATATC | 1 cut(s) | 1393 |
| Eco47I | GGWCC | 2 cut(s) | 217, 1087 |
| Eco52I | CGGCCG | 1 cut(s) | 53 |
| EcoRII | CCWGG | 1 cut(s) | 1331 |
| EcoRV | GATATC | 1 cut(s) | 1393 |
| EcoT14I | CCWWGG | 3 cut(s) | 271, 1090, 1161 |
| EcoT22I | ATGCAT | 1 cut(s) | 467 |
| EcoT38I | GRGCYC | 1 cut(s) | 1114 |
| ErhI | CCWWGG | 3 cut(s) | 271, 1090, 1161 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1248, 1280 |
| FauI | CCCGC | 1 cut(s) | 754 |
| FauNDI | CATATG | 2 cut(s) | 171, 601 |
| FbaI | TGATCA | 3 cut(s) | 201, 718, 847 |
| Fnu4HI | GCNGC | 7 cut(s) | 50, 53, 56, 59, 95, 146, 1223 |
| FokI | GGATG | 3 cut(s) | 115, 525, 671 |
| FriOI | GRGCYC | 1 cut(s) | 1114 |
| Fsp4HI | GCNGC | 7 cut(s) | 50, 53, 56, 59, 95, 146, 1223 |
| FspBI | CTAG | 4 cut(s) | 498, 519, 671, 1080 |
| GluI | GCNGC | 7 cut(s) | 50, 53, 56, 59, 95, 146, 1223 |
| GsaI | CCCAGC | 1 cut(s) | 1009 |
| HaeIII | GGCC | 5 cut(s) | 55, 61, 1004, 1160, 1271 |
| HapII | CCGG | 3 cut(s) | 65, 992, 1150 |
| HindIII | AAGCTT | 1 cut(s) | 615 |
| HinfI | GANTC | 3 cut(s) | 728, 795, 1309 |
| HpaII | CCGG | 3 cut(s) | 65, 992, 1150 |
| HphI | GGTGA | 1 cut(s) | 137 |
| Hpy166II | GTNNAC | 2 cut(s) | 43, 177 |
| Hpy188I | TCNGA | 3 cut(s) | 25, 733, 947 |
| Hpy188III | TCNNGA | 7 cut(s) | 433, 519, 563, 692, 722, 845, 851 |
| Hpy8I | GTNNAC | 2 cut(s) | 43, 177 |
| HpyAV | CCTTC | 4 cut(s) | 239, 391, 1184, 1250 |
| HpyCH4III | ACNGT | 3 cut(s) | 495, 927, 1065 |
| HpyCH4IV | ACGT | 2 cut(s) | 14, 895 |
| HpyCH4V | TGCA | 7 cut(s) | 148, 169, 232, 465, 538, 1225, 1351 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 55, 58, 142, 276, 1001 |
| HpyF3I | CTNAG | 2 cut(s) | 132, 487 |
| HpySE526I | ACGT | 2 cut(s) | 14, 895 |
| Ksp22I | TGATCA | 3 cut(s) | 201, 718, 847 |
| KspI | CCGCGG | 2 cut(s) | 53, 59 |
| LguI | GCTCTTC | 2 cut(s) | 84, 291 |
| LmnI | GCTCC | 1 cut(s) | 418 |
| Lsp1109I | GCAGC | 3 cut(s) | 106, 132, 1209 |
| LweI | GCATC | 1 cut(s) | 118 |
| MaeI | CTAG | 4 cut(s) | 498, 519, 671, 1080 |
| MaeII | ACGT | 2 cut(s) | 14, 895 |
| MaeIII | GTNAC | 3 cut(s) | 352, 1015, 1363 |
| MfeI | CAATTG | 1 cut(s) | 972 |
| MflI | RGATCY | 2 cut(s) | 988, 1261 |
| MhlI | GDGCHC | 2 cut(s) | 915, 1114 |
| MluCI | AATT | 4 cut(s) | 239, 330, 880, 972 |
| MlyI | GAGTC | 2 cut(s) | 737, 1318 |
| MmeI | TCCRAC | 2 cut(s) | 711, 1270 |
| Mph1103I | ATGCAT | 1 cut(s) | 467 |
| MseI | TTAA | 3 cut(s) | 530, 620, 678 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1095, 1166 |
| MspA1I | CMGCKG | 2 cut(s) | 52, 58 |
| MspCI | CTTAAG | 1 cut(s) | 529 |
| MspI | CCGG | 3 cut(s) | 65, 992, 1150 |
| MspR9I | CCNGG | 3 cut(s) | 66, 1150, 1333 |
| MunI | CAATTG | 1 cut(s) | 972 |
| Mva1269I | GAATGC | 1 cut(s) | 763 |
| MvaI | CCWGG | 1 cut(s) | 1333 |
| MvnI | CGCG | 2 cut(s) | 52, 58 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 55, 58, 142, 276, 1001 |
| NciI | CCSGG | 2 cut(s) | 66, 1150 |
| NcoI | CCATGG | 2 cut(s) | 1090, 1161 |
| NdeI | CATATG | 2 cut(s) | 171, 601 |
| NlaIV | GGNNCC | 1 cut(s) | 990 |
| NmuCI | GTSAC | 2 cut(s) | 1015, 1363 |
| NotI | GCGGCCGC | 1 cut(s) | 53 |
| NsiI | ATGCAT | 1 cut(s) | 467 |
| NspI | RCATGY | 1 cut(s) | 538 |
| PaeI | GCATGC | 1 cut(s) | 538 |
| PagI | TCATGA | 2 cut(s) | 691, 721 |
| PciSI | GCTCTTC | 2 cut(s) | 84, 291 |
| PctI | GAATGC | 1 cut(s) | 763 |
| PfeI | GAWTC | 1 cut(s) | 795 |
| PflFI | GACNNNGTC | 1 cut(s) | 1037 |
| PfoI | TCCNGGA | 1 cut(s) | 1148 |
| PkrI | GCNGC | 7 cut(s) | 51, 54, 57, 60, 96, 147, 1224 |
| PleI | GAGTC | 2 cut(s) | 736, 1317 |
| PpsI | GAGTC | 2 cut(s) | 736, 1317 |
| PsiI | TTATAA | 2 cut(s) | 666, 1217 |
| Psp6I | CCWGG | 1 cut(s) | 1331 |
| PspFI | CCCAGC | 1 cut(s) | 1005 |
| PspGI | CCWGG | 1 cut(s) | 1331 |
| PspN4I | GGNNCC | 1 cut(s) | 990 |
| PspPI | GGNCC | 3 cut(s) | 217, 1003, 1087 |
| PsuI | RGATCY | 2 cut(s) | 988, 1261 |
| PsyI | GACNNNGTC | 1 cut(s) | 1037 |
| RsaI | GTAC | 4 cut(s) | 178, 186, 212, 1250 |
| RsaNI | GTAC | 4 cut(s) | 177, 185, 211, 1249 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1095, 1166 |
| SacII | CCGCGG | 2 cut(s) | 53, 59 |
| SapI | GCTCTTC | 2 cut(s) | 84, 291 |
| SaqAI | TTAA | 3 cut(s) | 530, 620, 678 |
| SatI | GCNGC | 7 cut(s) | 50, 53, 56, 59, 95, 146, 1223 |
| Sau96I | GGNCC | 3 cut(s) | 217, 1003, 1087 |
| SchI | GAGTC | 2 cut(s) | 737, 1318 |
| ScrFI | CCNGG | 3 cut(s) | 66, 1150, 1333 |
| SduI | GDGCHC | 2 cut(s) | 915, 1114 |
| SfaNI | GCATC | 1 cut(s) | 118 |
| Sfr303I | CCGCGG | 2 cut(s) | 53, 59 |
| SgrBI | CCGCGG | 2 cut(s) | 53, 59 |
| SinI | GGWCC | 2 cut(s) | 217, 1087 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1095, 1166 |
| SmlI | CTYRAG | 3 cut(s) | 360, 529, 1046 |
| SmoI | CTYRAG | 3 cut(s) | 360, 529, 1046 |
| SphI | GCATGC | 1 cut(s) | 538 |
| Sse9I | AATT | 4 cut(s) | 239, 330, 880, 972 |
| SsiI | CCGC | 6 cut(s) | 50, 52, 56, 58, 77, 761 |
| SspMI | CTAG | 4 cut(s) | 498, 519, 671, 1080 |
| StyD4I | CCNGG | 3 cut(s) | 64, 1148, 1331 |
| StyI | CCWWGG | 3 cut(s) | 271, 1090, 1161 |
| TaaI | ACNGT | 3 cut(s) | 495, 927, 1065 |
| TaiI | ACGT | 2 cut(s) | 17, 898 |
| TaqI | TCGA | 7 cut(s) | 7, 120, 304, 342, 1026, 1068, 1235 |
| TasI | AATT | 4 cut(s) | 239, 330, 880, 972 |
| TatI | WGTACW | 2 cut(s) | 176, 210 |
| TauI | GCSGC | 4 cut(s) | 52, 55, 58, 61 |
| TfiI | GAWTC | 1 cut(s) | 795 |
| Tru1I | TTAA | 3 cut(s) | 530, 620, 678 |
| Tru9I | TTAA | 3 cut(s) | 530, 620, 678 |
| TscAI | CASTG | 4 cut(s) | 286, 508, 1020, 1102 |
| TseFI | GTSAC | 2 cut(s) | 1015, 1363 |
| TseI | GCWGC | 3 cut(s) | 94, 145, 1222 |
| Tsp45I | GTSAC | 2 cut(s) | 1015, 1363 |
| TspDTI | ATGAA | 9 cut(s) | 155, 561, 645, 699, 753, 762, 822, 840, 987 |
| TspGWI | ACGGA | 1 cut(s) | 115 |
| TspRI | CASTG | 4 cut(s) | 286, 508, 1020, 1102 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1037 |
| Vha464I | CTTAAG | 1 cut(s) | 529 |
| VpaK11BI | GGWCC | 2 cut(s) | 217, 1087 |
| XbaI | TCTAGA | 1 cut(s) | 518 |
| XceI | RCATGY | 1 cut(s) | 538 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 278 |
| XspI | CTAG | 4 cut(s) | 498, 519, 671, 1080 |
| Zsp2I | ATGCAT | 1 cut(s) | 467 |