ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 619 |
| AciI | CCGC | 3 cut(s) | 745, 1039, 1103 |
| AcuI | CTGAAG | 3 cut(s) | 246, 444, 666 |
| AdeI | CACNNNGTG | 1 cut(s) | 874 |
| AfaI | GTAC | 2 cut(s) | 1189, 1292 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 299, 428, 622, 708, 1252 |
| AflIII | ACRYGT | 2 cut(s) | 673, 1398 |
| AgsI | TTSAA | 7 cut(s) | 124, 189, 281, 389, 440, 763, 863 |
| AjiI | CACGTC | 1 cut(s) | 1399 |
| AjnI | CCWGG | 3 cut(s) | 346, 475, 1277 |
| AluBI | AGCT | 8 cut(s) | 159, 206, 284, 428, 527, 832, 908, 931 |
| AluI | AGCT | 8 cut(s) | 159, 206, 284, 428, 527, 832, 908, 931 |
| Alw21I | GWGCWC | 2 cut(s) | 649, 922 |
| Alw26I | GTCTC | 5 cut(s) | 34, 42, 264, 458, 1322 |
| Alw44I | GTGCAC | 1 cut(s) | 918 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 611 |
| Ama87I | CYCGRG | 1 cut(s) | 923 |
| AoxI | GGCC | 2 cut(s) | 68, 1280 |
| ApaLI | GTGCAC | 1 cut(s) | 918 |
| ApeKI | GCWGC | 5 cut(s) | 74, 527, 908, 928, 931 |
| AspLEI | GCGC | 1 cut(s) | 1353 |
| AsuHPI | GGTGA | 5 cut(s) | 314, 362, 412, 473, 521 |
| AvaI | CYCGRG | 1 cut(s) | 923 |
| AxyI | CCTNAGG | 1 cut(s) | 172 |
| BaeGI | GKGCMC | 1 cut(s) | 922 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 634, 666 |
| BbsI | GAAGAC | 1 cut(s) | 1380 |
| Bbv12I | GWGCWC | 2 cut(s) | 649, 922 |
| BbvI | GCAGC | 5 cut(s) | 86, 514, 895, 918, 940 |
| BccI | CCATC | 8 cut(s) | 260, 311, 500, 541, 950, 1103, 1126, 1319 |
| BceAI | ACGGC | 1 cut(s) | 1338 |
| BciT130I | CCWGG | 3 cut(s) | 348, 477, 1279 |
| BclI | TGATCA | 1 cut(s) | 1309 |
| BcoDI | GTCTC | 5 cut(s) | 34, 42, 264, 458, 1322 |
| BfaI | CTAG | 1 cut(s) | 549 |
| BfmI | CTRYAG | 2 cut(s) | 72, 375 |
| BfuAI | ACCTGC | 1 cut(s) | 619 |
| BisI | GCNGC | 6 cut(s) | 75, 528, 909, 929, 932, 1104 |
| BlsI | GCNGC | 6 cut(s) | 76, 529, 910, 930, 933, 1105 |
| Bme1390I | CCNGG | 3 cut(s) | 348, 477, 1279 |
| BmeT110I | CYCGRG | 1 cut(s) | 923 |
| BmgBI | CACGTC | 1 cut(s) | 1399 |
| BmrFI | CCNGG | 3 cut(s) | 348, 477, 1279 |
| BmsI | GCATC | 1 cut(s) | 841 |
| BpiI | GAAGAC | 1 cut(s) | 1380 |
| BpmI | CTGGAG | 1 cut(s) | 1158 |
| Bpu10I | CCTNAGC | 1 cut(s) | 453 |
| Bsa29I | ATCGAT | 1 cut(s) | 408 |
| BsaBI | GATNNNNATC | 1 cut(s) | 491 |
| BsaI | GGTCTC | 1 cut(s) | 458 |
| BsaJI | CCNNGG | 2 cut(s) | 1251, 1277 |
| BsaWI | WCCGGW | 1 cut(s) | 96 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 261, 291 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 299, 428, 622, 708, 1252 |
| Bse118I | RCCGGY | 1 cut(s) | 934 |
| Bse1I | ACTGG | 1 cut(s) | 1031 |
| Bse21I | CCTNAGG | 1 cut(s) | 172 |
| Bse3DI | GCAATG | 3 cut(s) | 165, 1048, 1293 |
| Bse8I | GATNNNNATC | 1 cut(s) | 491 |
| BseBI | CCWGG | 3 cut(s) | 348, 477, 1279 |
| BseCI | ATCGAT | 1 cut(s) | 408 |
| BseDI | CCNNGG | 2 cut(s) | 1251, 1277 |
| BseGI | GGATG | 1 cut(s) | 856 |
| BseJI | GATNNNNATC | 1 cut(s) | 491 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 299, 428, 622, 708, 1252 |
| BseMI | GCAATG | 3 cut(s) | 165, 1048, 1293 |
| BseMII | CTCAG | 3 cut(s) | 53, 785, 1079 |
| BseNI | ACTGG | 1 cut(s) | 1031 |
| BseSI | GKGCMC | 1 cut(s) | 922 |
| BseXI | GCAGC | 5 cut(s) | 86, 514, 895, 918, 940 |
| BshFI | GGCC | 2 cut(s) | 70, 1282 |
| BshVI | ATCGAT | 1 cut(s) | 408 |
| BsiHKAI | GWGCWC | 2 cut(s) | 649, 922 |
| BsiHKCI | CYCGRG | 1 cut(s) | 923 |
| BsiSI | CCGG | 3 cut(s) | 22, 97, 935 |
| BslFI | GGGAC | 4 cut(s) | 25, 63, 1021, 1233 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 299, 428, 622, 708, 1252 |
| BsmAI | GTCTC | 5 cut(s) | 34, 42, 264, 458, 1322 |
| BsmBI | CGTCTC | 2 cut(s) | 42, 1322 |
| BsmFI | GGGAC | 4 cut(s) | 25, 63, 1021, 1233 |
| BsnI | GGCC | 2 cut(s) | 70, 1282 |
| Bso31I | GGTCTC | 1 cut(s) | 458 |
| BsoBI | CYCGRG | 1 cut(s) | 923 |
| Bsp1286I | GDGCHC | 2 cut(s) | 649, 922 |
| Bsp1407I | TGTACA | 1 cut(s) | 1290 |
| Bsp143I | GATC | 3 cut(s) | 251, 1080, 1309 |
| Bsp19I | CCATGG | 1 cut(s) | 1251 |
| BspACI | CCGC | 3 cut(s) | 745, 1039, 1103 |
| BspANI | GGCC | 2 cut(s) | 70, 1282 |
| BspCNI | CTCAG | 3 cut(s) | 52, 784, 1078 |
| BspDI | ATCGAT | 1 cut(s) | 408 |
| BspMAI | CTGCAG | 1 cut(s) | 76 |
| BspMI | ACCTGC | 1 cut(s) | 619 |
| BspTNI | GGTCTC | 1 cut(s) | 458 |
| BsrDI | GCAATG | 3 cut(s) | 165, 1048, 1293 |
| BsrFI | RCCGGY | 1 cut(s) | 934 |
| BsrGI | TGTACA | 1 cut(s) | 1290 |
| BsrI | ACTGG | 1 cut(s) | 1031 |
| BssAI | RCCGGY | 1 cut(s) | 934 |
| BssECI | CCNNGG | 2 cut(s) | 1251, 1277 |
| BssMI | GATC | 3 cut(s) | 251, 1080, 1309 |
| BssT1I | CCWWGG | 1 cut(s) | 1251 |
| Bst2UI | CCWGG | 3 cut(s) | 348, 477, 1279 |
| Bst4CI | ACNGT | 5 cut(s) | 103, 469, 1163, 1212, 1247 |
| Bst6I | CTCTTC | 3 cut(s) | 37, 242, 1324 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 611 |
| BstAUI | TGTACA | 1 cut(s) | 1290 |
| BstC8I | GCNNGC | 3 cut(s) | 72, 525, 1229 |
| BstDEI | CTNAG | 6 cut(s) | 39, 172, 453, 737, 771, 1065 |
| BstDSI | CCRYGG | 1 cut(s) | 1251 |
| BstF5I | GGATG | 1 cut(s) | 856 |
| BstHHI | GCGC | 1 cut(s) | 1353 |
| BstKTI | GATC | 3 cut(s) | 254, 1083, 1312 |
| BstMAI | GTCTC | 5 cut(s) | 34, 42, 264, 458, 1322 |
| BstMBI | GATC | 3 cut(s) | 251, 1080, 1309 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 611, 917, 1100 |
| BstNI | CCWGG | 3 cut(s) | 348, 477, 1279 |
| BstNSI | RCATGY | 2 cut(s) | 677, 1231 |
| BstSCI | CCNGG | 3 cut(s) | 346, 475, 1277 |
| BstSFI | CTRYAG | 2 cut(s) | 72, 375 |
| BstSLI | GKGCMC | 1 cut(s) | 922 |
| BstV1I | GCAGC | 5 cut(s) | 86, 514, 895, 918, 940 |
| BstV2I | GAAGAC | 1 cut(s) | 1380 |
| Bsu15I | ATCGAT | 1 cut(s) | 408 |
| Bsu36I | CCTNAGG | 1 cut(s) | 172 |
| BsuRI | GGCC | 2 cut(s) | 70, 1282 |
| BsuTUI | ATCGAT | 1 cut(s) | 408 |
| BtgI | CCRYGG | 1 cut(s) | 1251 |
| BtgZI | GCGATG | 1 cut(s) | 975 |
| BtrI | CACGTC | 1 cut(s) | 1399 |
| BtsCI | GGATG | 1 cut(s) | 856 |
| BveI | ACCTGC | 1 cut(s) | 619 |
| Cac8I | GCNNGC | 3 cut(s) | 72, 525, 1229 |
| CaiI | CAGNNNCTG | 1 cut(s) | 611 |
| CfoI | GCGC | 1 cut(s) | 1353 |
| Cfr10I | RCCGGY | 1 cut(s) | 934 |
| ClaI | ATCGAT | 1 cut(s) | 408 |
| CsiI | ACCWGGT | 1 cut(s) | 346 |
| Csp6I | GTAC | 2 cut(s) | 1188, 1291 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1030, 1065 |
| CviAII | CATG | 4 cut(s) | 298, 674, 1228, 1252 |
| CviQI | GTAC | 2 cut(s) | 1188, 1291 |
| DdeI | CTNAG | 6 cut(s) | 39, 172, 453, 737, 771, 1065 |
| DpnI | GATC | 3 cut(s) | 253, 1082, 1311 |
| DpnII | GATC | 3 cut(s) | 251, 1080, 1309 |
| DraIII | CACNNNGTG | 1 cut(s) | 874 |
| Eam1104I | CTCTTC | 3 cut(s) | 37, 242, 1324 |
| EarI | CTCTTC | 3 cut(s) | 37, 242, 1324 |
| Eco130I | CCWWGG | 1 cut(s) | 1251 |
| Eco147I | AGGCCT | 1 cut(s) | 70 |
| Eco31I | GGTCTC | 1 cut(s) | 458 |
| Eco32I | GATATC | 2 cut(s) | 967, 991 |
| Eco57I | CTGAAG | 3 cut(s) | 246, 444, 666 |
| Eco81I | CCTNAGG | 1 cut(s) | 172 |
| Eco88I | CYCGRG | 1 cut(s) | 923 |
| EcoRII | CCWGG | 3 cut(s) | 346, 475, 1277 |
| EcoRV | GATATC | 2 cut(s) | 967, 991 |
| EcoT14I | CCWWGG | 1 cut(s) | 1251 |
| ErhI | CCWWGG | 1 cut(s) | 1251 |
| Esp3I | CGTCTC | 2 cut(s) | 42, 1322 |
| FaeI | CATG | 4 cut(s) | 301, 677, 1231, 1255 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 839, 871 |
| FaqI | GGGAC | 4 cut(s) | 25, 63, 1021, 1233 |
| FatI | CATG | 4 cut(s) | 297, 673, 1227, 1251 |
| FauI | CCCGC | 1 cut(s) | 738 |
| FauNDI | CATATG | 1 cut(s) | 1306 |
| FbaI | TGATCA | 1 cut(s) | 1309 |
| Fnu4HI | GCNGC | 6 cut(s) | 75, 528, 909, 929, 932, 1104 |
| FokI | GGATG | 1 cut(s) | 863 |
| Fsp4HI | GCNGC | 6 cut(s) | 75, 528, 909, 929, 932, 1104 |
| FspBI | CTAG | 1 cut(s) | 549 |
| GlaI | GCGC | 1 cut(s) | 1352 |
| GluI | GCNGC | 6 cut(s) | 75, 528, 909, 929, 932, 1104 |
| GsuI | CTGGAG | 1 cut(s) | 1158 |
| HaeIII | GGCC | 2 cut(s) | 70, 1282 |
| HapII | CCGG | 3 cut(s) | 22, 97, 935 |
| HhaI | GCGC | 1 cut(s) | 1353 |
| Hin1II | CATG | 4 cut(s) | 301, 677, 1231, 1255 |
| Hin6I | GCGC | 1 cut(s) | 1351 |
| HinP1I | GCGC | 1 cut(s) | 1351 |
| HincII | GTYRAC | 1 cut(s) | 792 |
| HindII | GTYRAC | 1 cut(s) | 792 |
| HinfI | GANTC | 3 cut(s) | 227, 305, 767 |
| HpaI | GTTAAC | 1 cut(s) | 792 |
| HpaII | CCGG | 3 cut(s) | 22, 97, 935 |
| HphI | GGTGA | 5 cut(s) | 314, 362, 412, 473, 521 |
| Hpy166II | GTNNAC | 4 cut(s) | 792, 920, 1190, 1342 |
| Hpy188I | TCNGA | 8 cut(s) | 150, 239, 265, 538, 685, 774, 841, 1068 |
| Hpy188III | TCNNGA | 1 cut(s) | 422 |
| Hpy8I | GTNNAC | 4 cut(s) | 792, 920, 1190, 1342 |
| Hpy99I | CGWCG | 1 cut(s) | 473 |
| HpyAV | CCTTC | 5 cut(s) | 55, 452, 506, 660, 1069 |
| HpyCH4III | ACNGT | 5 cut(s) | 103, 469, 1163, 1212, 1247 |
| HpyCH4IV | ACGT | 1 cut(s) | 1398 |
| HpyCH4V | TGCA | 5 cut(s) | 74, 220, 244, 920, 1231 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 611, 917, 1100 |
| HpyF3I | CTNAG | 6 cut(s) | 39, 172, 453, 737, 771, 1065 |
| HpySE526I | ACGT | 1 cut(s) | 1398 |
| Hsp92II | CATG | 4 cut(s) | 301, 677, 1231, 1255 |
| HspAI | GCGC | 1 cut(s) | 1351 |
| Ksp22I | TGATCA | 1 cut(s) | 1309 |
| KspAI | GTTAAC | 1 cut(s) | 792 |
| Kzo9I | GATC | 3 cut(s) | 251, 1080, 1309 |
| LmnI | GCTCC | 2 cut(s) | 535, 837 |
| Lsp1109I | GCAGC | 5 cut(s) | 86, 514, 895, 918, 940 |
| LweI | GCATC | 1 cut(s) | 841 |
| MabI | ACCWGGT | 1 cut(s) | 346 |
| MaeI | CTAG | 1 cut(s) | 549 |
| MaeII | ACGT | 1 cut(s) | 1398 |
| MaeIII | GTNAC | 2 cut(s) | 350, 400 |
| MalI | GATC | 3 cut(s) | 253, 1082, 1311 |
| MboI | GATC | 3 cut(s) | 251, 1080, 1309 |
| MboII | GAAGA | 6 cut(s) | 24, 252, 259, 645, 1341, 1385 |
| MhlI | GDGCHC | 2 cut(s) | 649, 922 |
| MluCI | AATT | 1 cut(s) | 878 |
| MseI | TTAA | 3 cut(s) | 483, 791, 801 |
| MspA1I | CMGCKG | 1 cut(s) | 931 |
| MspI | CCGG | 3 cut(s) | 22, 97, 935 |
| MspR9I | CCNGG | 3 cut(s) | 348, 477, 1279 |
| MvaI | CCWGG | 3 cut(s) | 348, 477, 1279 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 611, 917, 1100 |
| NcoI | CCATGG | 1 cut(s) | 1251 |
| NdeI | CATATG | 1 cut(s) | 1306 |
| NdeII | GATC | 3 cut(s) | 251, 1080, 1309 |
| NlaIII | CATG | 4 cut(s) | 301, 677, 1231, 1255 |
| NmuCI | GTSAC | 2 cut(s) | 350, 400 |
| NspI | RCATGY | 2 cut(s) | 677, 1231 |
| PaeI | GCATGC | 1 cut(s) | 1231 |
| PaeR7I | CTCGAG | 1 cut(s) | 923 |
| PceI | AGGCCT | 1 cut(s) | 70 |
| PciI | ACATGT | 1 cut(s) | 673 |
| PfeI | GAWTC | 3 cut(s) | 227, 305, 767 |
| PkrI | GCNGC | 6 cut(s) | 76, 529, 910, 930, 933, 1105 |
| PscI | ACATGT | 1 cut(s) | 673 |
| Psp6I | CCWGG | 3 cut(s) | 346, 475, 1277 |
| PspGI | CCWGG | 3 cut(s) | 346, 475, 1277 |
| PspXI | VCTCGAGB | 1 cut(s) | 923 |
| PstI | CTGCAG | 1 cut(s) | 76 |
| PstNI | CAGNNNCTG | 1 cut(s) | 611 |
| PvuII | CAGCTG | 1 cut(s) | 931 |
| RsaI | GTAC | 2 cut(s) | 1189, 1292 |
| RsaNI | GTAC | 2 cut(s) | 1188, 1291 |
| SaqAI | TTAA | 3 cut(s) | 483, 791, 801 |
| SatI | GCNGC | 6 cut(s) | 75, 528, 909, 929, 932, 1104 |
| Sau3AI | GATC | 3 cut(s) | 251, 1080, 1309 |
| ScrFI | CCNGG | 3 cut(s) | 348, 477, 1279 |
| SduI | GDGCHC | 2 cut(s) | 649, 922 |
| SexAI | ACCWGGT | 1 cut(s) | 346 |
| SfaNI | GCATC | 1 cut(s) | 841 |
| SfcI | CTRYAG | 2 cut(s) | 72, 375 |
| Sfr274I | CTCGAG | 1 cut(s) | 923 |
| SlaI | CTCGAG | 1 cut(s) | 923 |
| SmlI | CTYRAG | 1 cut(s) | 923 |
| SmoI | CTYRAG | 1 cut(s) | 923 |
| SphI | GCATGC | 1 cut(s) | 1231 |
| Sse9I | AATT | 1 cut(s) | 878 |
| SseBI | AGGCCT | 1 cut(s) | 70 |
| SsiI | CCGC | 3 cut(s) | 745, 1039, 1103 |
| SspI | AATATT | 1 cut(s) | 1270 |
| SspMI | CTAG | 1 cut(s) | 549 |
| StuI | AGGCCT | 1 cut(s) | 70 |
| StyD4I | CCNGG | 3 cut(s) | 346, 475, 1277 |
| StyI | CCWWGG | 1 cut(s) | 1251 |
| TaaI | ACNGT | 5 cut(s) | 103, 469, 1163, 1212, 1247 |
| TaiI | ACGT | 1 cut(s) | 1401 |
| TaqI | TCGA | 3 cut(s) | 408, 471, 924 |
| TasI | AATT | 1 cut(s) | 878 |
| TatI | WGTACW | 2 cut(s) | 1187, 1290 |
| TauI | GCSGC | 1 cut(s) | 1106 |
| TfiI | GAWTC | 3 cut(s) | 227, 305, 767 |
| Tru1I | TTAA | 3 cut(s) | 483, 791, 801 |
| Tru9I | TTAA | 3 cut(s) | 483, 791, 801 |
| TseFI | GTSAC | 2 cut(s) | 350, 400 |
| TseI | GCWGC | 5 cut(s) | 74, 527, 908, 928, 931 |
| Tsp45I | GTSAC | 2 cut(s) | 350, 400 |
| TspDTI | ATGAA | 3 cut(s) | 286, 842, 1070 |
| TspGWI | ACGGA | 2 cut(s) | 824, 885 |
| VneI | GTGCAC | 1 cut(s) | 918 |
| XceI | RCATGY | 2 cut(s) | 677, 1231 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1129 |
| XhoI | CTCGAG | 1 cut(s) | 923 |
| XspI | CTAG | 1 cut(s) | 549 |