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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 361 |
| AccI | GTMKAC | 2 cut(s) | 68, 196 |
| AciI | CCGC | 1 cut(s) | 687 |
| AclWI | GGATC | 5 cut(s) | 11, 24, 192, 733, 746 |
| AcuI | CTGAAG | 3 cut(s) | 267, 366, 456 |
| AdeI | CACNNNGTG | 1 cut(s) | 307 |
| AfaI | GTAC | 1 cut(s) | 94 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 36, 320, 449, 519 |
| AflIII | ACRYGT | 1 cut(s) | 191 |
| AgsI | TTSAA | 1 cut(s) | 472 |
| AjnI | CCWGG | 2 cut(s) | 385, 645 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 342, 374 |
| AluBI | AGCT | 5 cut(s) | 448, 548, 629, 665, 716 |
| AluI | AGCT | 5 cut(s) | 448, 548, 629, 665, 716 |
| Alw26I | GTCTC | 1 cut(s) | 425 |
| AlwI | GGATC | 5 cut(s) | 11, 24, 192, 733, 746 |
| AoxI | GGCC | 1 cut(s) | 392 |
| ApeKI | GCWGC | 4 cut(s) | 542, 545, 623, 626 |
| AspA2I | CCTAGG | 1 cut(s) | 35 |
| AspS9I | GGNCC | 2 cut(s) | 440, 457 |
| AvaII | GGWCC | 2 cut(s) | 440, 457 |
| AvrII | CCTAGG | 1 cut(s) | 35 |
| BamHI | GGATCC | 2 cut(s) | 16, 738 |
| BanII | GRGCYC | 1 cut(s) | 104 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 673, 705 |
| BbvI | GCAGC | 4 cut(s) | 554, 557, 635, 638 |
| BccI | CCATC | 3 cut(s) | 174, 319, 365 |
| BciT130I | CCWGG | 2 cut(s) | 387, 647 |
| BcoDI | GTCTC | 1 cut(s) | 425 |
| BfaI | CTAG | 3 cut(s) | 36, 87, 630 |
| BfuAI | ACCTGC | 1 cut(s) | 361 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 391 |
| BisI | GCNGC | 5 cut(s) | 543, 546, 624, 627, 687 |
| BlnI | CCTAGG | 1 cut(s) | 35 |
| BlsI | GCNGC | 5 cut(s) | 544, 547, 625, 628, 688 |
| Bme1390I | CCNGG | 2 cut(s) | 387, 647 |
| Bme18I | GGWCC | 2 cut(s) | 440, 457 |
| BmgT120I | GGNCC | 2 cut(s) | 440, 457 |
| BmiI | GGNNCC | 5 cut(s) | 18, 101, 442, 458, 740 |
| BmrFI | CCNGG | 2 cut(s) | 387, 647 |
| BmrI | ACTGGG | 1 cut(s) | 105 |
| BmsI | GCATC | 8 cut(s) | 90, 250, 327, 406, 428, 532, 596, 601 |
| BmuI | ACTGGG | 1 cut(s) | 105 |
| BsaJI | CCNNGG | 3 cut(s) | 35, 395, 646 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 281, 311 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 36, 320, 449, 519 |
| Bse1I | ACTGG | 1 cut(s) | 100 |
| BseBI | CCWGG | 2 cut(s) | 387, 647 |
| BseDI | CCNNGG | 3 cut(s) | 35, 395, 646 |
| BseGI | GGATG | 5 cut(s) | 81, 265, 330, 342, 357 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 36, 320, 449, 519 |
| BseMII | CTCAG | 2 cut(s) | 383, 414 |
| BseNI | ACTGG | 1 cut(s) | 100 |
| BseRI | GAGGAG | 2 cut(s) | 144, 357 |
| BseXI | GCAGC | 4 cut(s) | 554, 557, 635, 638 |
| BsgI | GTGCAG | 1 cut(s) | 684 |
| BshFI | GGCC | 1 cut(s) | 394 |
| BslFI | GGGAC | 1 cut(s) | 568 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 36, 320, 449, 519 |
| BsmAI | GTCTC | 1 cut(s) | 425 |
| BsmFI | GGGAC | 1 cut(s) | 568 |
| BsmI | GAATGC | 1 cut(s) | 763 |
| BsnI | GGCC | 1 cut(s) | 394 |
| Bsp1286I | GDGCHC | 1 cut(s) | 104 |
| Bsp143I | GATC | 4 cut(s) | 16, 148, 184, 738 |
| BspACI | CCGC | 1 cut(s) | 687 |
| BspANI | GGCC | 1 cut(s) | 394 |
| BspCNI | CTCAG | 2 cut(s) | 382, 415 |
| BspHI | TCATGA | 1 cut(s) | 231 |
| BspLI | GGNNCC | 5 cut(s) | 18, 101, 442, 458, 740 |
| BspMI | ACCTGC | 1 cut(s) | 361 |
| BspPI | GGATC | 5 cut(s) | 11, 24, 192, 733, 746 |
| BsrI | ACTGG | 1 cut(s) | 100 |
| BssECI | CCNNGG | 3 cut(s) | 35, 395, 646 |
| BssMI | GATC | 4 cut(s) | 16, 148, 184, 738 |
| BssNAI | GTATAC | 1 cut(s) | 197 |
| BssT1I | CCWWGG | 2 cut(s) | 35, 395 |
| Bst1107I | GTATAC | 1 cut(s) | 197 |
| Bst2UI | CCWGG | 2 cut(s) | 387, 647 |
| Bst4CI | ACNGT | 3 cut(s) | 307, 485, 578 |
| Bst6I | CTCTTC | 1 cut(s) | 557 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 758 |
| BstC8I | GCNNGC | 6 cut(s) | 172, 206, 210, 214, 265, 673 |
| BstDEI | CTNAG | 3 cut(s) | 369, 423, 597 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 517 |
| BstF5I | GGATG | 5 cut(s) | 81, 265, 330, 342, 357 |
| BstKTI | GATC | 4 cut(s) | 19, 151, 187, 741 |
| BstMAI | GTCTC | 1 cut(s) | 425 |
| BstMBI | GATC | 4 cut(s) | 16, 148, 184, 738 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 391, 620, 635, 758 |
| BstNI | CCWGG | 2 cut(s) | 387, 647 |
| BstNSI | RCATGY | 3 cut(s) | 195, 212, 216 |
| BstSCI | CCNGG | 2 cut(s) | 385, 645 |
| BstV1I | GCAGC | 4 cut(s) | 554, 557, 635, 638 |
| BstX2I | RGATCY | 3 cut(s) | 16, 184, 738 |
| BstYI | RGATCY | 3 cut(s) | 16, 184, 738 |
| BstZ17I | GTATAC | 1 cut(s) | 197 |
| BsuRI | GGCC | 1 cut(s) | 394 |
| BtsCI | GGATG | 5 cut(s) | 81, 265, 330, 342, 357 |
| BtsIMutI | CAGTG | 2 cut(s) | 312, 583 |
| BveI | ACCTGC | 1 cut(s) | 361 |
| Cac8I | GCNNGC | 6 cut(s) | 172, 206, 210, 214, 265, 673 |
| CciI | TCATGA | 1 cut(s) | 231 |
| Cfr13I | GGNCC | 2 cut(s) | 440, 457 |
| Csp6I | GTAC | 1 cut(s) | 93 |
| CviAII | CATG | 5 cut(s) | 192, 209, 213, 232, 286 |
| CviQI | GTAC | 1 cut(s) | 93 |
| DdeI | CTNAG | 3 cut(s) | 369, 423, 597 |
| DpnI | GATC | 4 cut(s) | 18, 150, 186, 740 |
| DpnII | GATC | 4 cut(s) | 16, 148, 184, 738 |
| DraIII | CACNNNGTG | 1 cut(s) | 307 |
| Eam1104I | CTCTTC | 1 cut(s) | 557 |
| EarI | CTCTTC | 1 cut(s) | 557 |
| Eco130I | CCWWGG | 2 cut(s) | 35, 395 |
| Eco24I | GRGCYC | 1 cut(s) | 104 |
| Eco47I | GGWCC | 2 cut(s) | 440, 457 |
| Eco57I | CTGAAG | 3 cut(s) | 267, 366, 456 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 517 |
| EcoO109I | RGGNCCY | 1 cut(s) | 440 |
| EcoRII | CCWGG | 2 cut(s) | 385, 645 |
| EcoT14I | CCWWGG | 2 cut(s) | 35, 395 |
| EcoT22I | ATGCAT | 2 cut(s) | 214, 421 |
| EcoT38I | GRGCYC | 1 cut(s) | 104 |
| ErhI | CCWWGG | 2 cut(s) | 35, 395 |
| FaeI | CATG | 5 cut(s) | 195, 212, 216, 235, 289 |
| FaqI | GGGAC | 1 cut(s) | 568 |
| FatI | CATG | 5 cut(s) | 191, 208, 212, 231, 285 |
| FauNDI | CATATG | 1 cut(s) | 253 |
| FblI | GTMKAC | 2 cut(s) | 68, 196 |
| Fnu4HI | GCNGC | 5 cut(s) | 543, 546, 624, 627, 687 |
| FokI | GGATG | 5 cut(s) | 68, 272, 337, 344, 349 |
| FriOI | GRGCYC | 1 cut(s) | 104 |
| Fsp4HI | GCNGC | 5 cut(s) | 543, 546, 624, 627, 687 |
| FspBI | CTAG | 3 cut(s) | 36, 87, 630 |
| GluI | GCNGC | 5 cut(s) | 543, 546, 624, 627, 687 |
| HaeIII | GGCC | 1 cut(s) | 394 |
| Hin1II | CATG | 5 cut(s) | 195, 212, 216, 235, 289 |
| HindIII | AAGCTT | 2 cut(s) | 446, 714 |
| HinfI | GANTC | 1 cut(s) | 408 |
| Hpy166II | GTNNAC | 2 cut(s) | 69, 197 |
| Hpy188I | TCNGA | 3 cut(s) | 346, 424, 743 |
| Hpy188III | TCNNGA | 2 cut(s) | 232, 508 |
| Hpy8I | GTNNAC | 2 cut(s) | 69, 197 |
| HpyAV | CCTTC | 5 cut(s) | 153, 351, 431, 447, 561 |
| HpyCH4III | ACNGT | 3 cut(s) | 307, 485, 578 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 391, 620, 635, 758 |
| HpyF3I | CTNAG | 3 cut(s) | 369, 423, 597 |
| Hsp92II | CATG | 5 cut(s) | 195, 212, 216, 235, 289 |
| Kzo9I | GATC | 4 cut(s) | 16, 148, 184, 738 |
| LmnI | GCTCC | 2 cut(s) | 99, 670 |
| Lsp1109I | GCAGC | 4 cut(s) | 554, 557, 635, 638 |
| LweI | GCATC | 8 cut(s) | 90, 250, 327, 406, 428, 532, 596, 601 |
| MaeI | CTAG | 3 cut(s) | 36, 87, 630 |
| MalI | GATC | 4 cut(s) | 18, 150, 186, 740 |
| MboI | GATC | 4 cut(s) | 16, 148, 184, 738 |
| MboII | GAAGA | 7 cut(s) | 64, 189, 220, 359, 518, 574, 699 |
| MflI | RGATCY | 3 cut(s) | 16, 184, 738 |
| MhlI | GDGCHC | 1 cut(s) | 104 |
| MnlI | CCTC | 8 cut(s) | 106, 122, 125, 371, 375, 378, 577, 612 |
| Mph1103I | ATGCAT | 2 cut(s) | 214, 421 |
| MseI | TTAA | 1 cut(s) | 63 |
| MslI | CAYNNNNRTG | 1 cut(s) | 230 |
| MspR9I | CCNGG | 2 cut(s) | 387, 647 |
| Mva1269I | GAATGC | 1 cut(s) | 763 |
| MvaI | CCWGG | 2 cut(s) | 387, 647 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 391, 620, 635, 758 |
| NdeI | CATATG | 1 cut(s) | 253 |
| NdeII | GATC | 4 cut(s) | 16, 148, 184, 738 |
| NlaIII | CATG | 5 cut(s) | 195, 212, 216, 235, 289 |
| NlaIV | GGNNCC | 5 cut(s) | 18, 101, 442, 458, 740 |
| NsiI | ATGCAT | 2 cut(s) | 214, 421 |
| NspI | RCATGY | 3 cut(s) | 195, 212, 216 |
| PaeI | GCATGC | 2 cut(s) | 212, 216 |
| PagI | TCATGA | 1 cut(s) | 231 |
| PciI | ACATGT | 1 cut(s) | 191 |
| PctI | GAATGC | 1 cut(s) | 763 |
| PfeI | GAWTC | 1 cut(s) | 408 |
| PkrI | GCNGC | 5 cut(s) | 544, 547, 625, 628, 688 |
| PpuMI | RGGWCCY | 1 cut(s) | 440 |
| PscI | ACATGT | 1 cut(s) | 191 |
| Psp5II | RGGWCCY | 1 cut(s) | 440 |
| Psp6I | CCWGG | 2 cut(s) | 385, 645 |
| PspGI | CCWGG | 2 cut(s) | 385, 645 |
| PspN4I | GGNNCC | 5 cut(s) | 18, 101, 442, 458, 740 |
| PspPI | GGNCC | 2 cut(s) | 440, 457 |
| PspPPI | RGGWCCY | 1 cut(s) | 440 |
| PsuI | RGATCY | 3 cut(s) | 16, 184, 738 |
| RsaI | GTAC | 1 cut(s) | 94 |
| RsaNI | GTAC | 1 cut(s) | 93 |
| RseI | CAYNNNNRTG | 1 cut(s) | 230 |
| SaqAI | TTAA | 1 cut(s) | 63 |
| SatI | GCNGC | 5 cut(s) | 543, 546, 624, 627, 687 |
| Sau3AI | GATC | 4 cut(s) | 16, 148, 184, 738 |
| Sau96I | GGNCC | 2 cut(s) | 440, 457 |
| ScrFI | CCNGG | 2 cut(s) | 387, 647 |
| SduI | GDGCHC | 1 cut(s) | 104 |
| SfaNI | GCATC | 8 cut(s) | 90, 250, 327, 406, 428, 532, 596, 601 |
| SinI | GGWCC | 2 cut(s) | 440, 457 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 230 |
| SphI | GCATGC | 2 cut(s) | 212, 216 |
| SsiI | CCGC | 1 cut(s) | 687 |
| SspMI | CTAG | 3 cut(s) | 36, 87, 630 |
| StyD4I | CCNGG | 2 cut(s) | 385, 645 |
| StyI | CCWWGG | 2 cut(s) | 35, 395 |
| TaaI | ACNGT | 3 cut(s) | 307, 485, 578 |
| TauI | GCSGC | 1 cut(s) | 689 |
| TfiI | GAWTC | 1 cut(s) | 408 |
| Tru1I | TTAA | 1 cut(s) | 63 |
| Tru9I | TTAA | 1 cut(s) | 63 |
| TscAI | CASTG | 2 cut(s) | 312, 583 |
| TseI | GCWGC | 4 cut(s) | 542, 545, 623, 626 |
| TspDTI | ATGAA | 2 cut(s) | 220, 708 |
| TspRI | CASTG | 2 cut(s) | 312, 583 |
| VpaK11BI | GGWCC | 2 cut(s) | 440, 457 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 517 |
| XceI | RCATGY | 3 cut(s) | 195, 212, 216 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 283 |
| XmaJI | CCTAGG | 1 cut(s) | 35 |
| XmiI | GTMKAC | 2 cut(s) | 68, 196 |
| XspI | CTAG | 3 cut(s) | 36, 87, 630 |
| Zsp2I | ATGCAT | 2 cut(s) | 214, 421 |