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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 621 |
| AccB1I | GGYRCC | 2 cut(s) | 923, 956 |
| AccI | GTMKAC | 1 cut(s) | 972 |
| AclWI | GGATC | 1 cut(s) | 540 |
| AcoI | YGGCCR | 2 cut(s) | 247, 928 |
| AcsI | RAATTY | 1 cut(s) | 844 |
| AcuI | CTGAAG | 2 cut(s) | 194, 809 |
| AfeI | AGCGCT | 1 cut(s) | 89 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 123, 610, 861 |
| AgsI | TTSAA | 7 cut(s) | 28, 187, 232, 430, 631, 727, 953 |
| AjnI | CCWGG | 3 cut(s) | 62, 290, 514 |
| AluBI | AGCT | 6 cut(s) | 170, 224, 319, 375, 595, 935 |
| AluI | AGCT | 6 cut(s) | 170, 224, 319, 375, 595, 935 |
| Alw21I | GWGCWC | 2 cut(s) | 172, 226 |
| AlwI | GGATC | 1 cut(s) | 540 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 999 |
| Aor51HI | AGCGCT | 1 cut(s) | 89 |
| AoxI | GGCC | 4 cut(s) | 14, 247, 644, 928 |
| ApeKI | GCWGC | 1 cut(s) | 893 |
| ApoI | RAATTY | 1 cut(s) | 844 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 644, 676 |
| AseI | ATTAAT | 1 cut(s) | 273 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 182 |
| AspA2I | CCTAGG | 1 cut(s) | 11 |
| AspLEI | GCGC | 1 cut(s) | 90 |
| AspS9I | GGNCC | 3 cut(s) | 15, 645, 660 |
| AsuHPI | GGTGA | 2 cut(s) | 140, 493 |
| AvaII | GGWCC | 1 cut(s) | 660 |
| AvrII | CCTAGG | 1 cut(s) | 11 |
| BalI | TGGCCA | 1 cut(s) | 249 |
| BanI | GGYRCC | 2 cut(s) | 923, 956 |
| BanII | GRGCYC | 2 cut(s) | 172, 226 |
| BbsI | GAAGAC | 1 cut(s) | 239 |
| Bbv12I | GWGCWC | 2 cut(s) | 172, 226 |
| BbvI | GCAGC | 1 cut(s) | 905 |
| BccI | CCATC | 3 cut(s) | 212, 463, 580 |
| BciT130I | CCWGG | 3 cut(s) | 64, 292, 516 |
| BclI | TGATCA | 1 cut(s) | 735 |
| BfaI | CTAG | 3 cut(s) | 12, 35, 135 |
| BfmI | CTRYAG | 3 cut(s) | 103, 196, 264 |
| BfoI | RGCGCY | 1 cut(s) | 91 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 643 |
| BglII | AGATCT | 1 cut(s) | 54 |
| BisI | GCNGC | 1 cut(s) | 894 |
| BlnI | CCTAGG | 1 cut(s) | 11 |
| BlsI | GCNGC | 1 cut(s) | 895 |
| Bme1390I | CCNGG | 3 cut(s) | 64, 292, 516 |
| Bme18I | GGWCC | 1 cut(s) | 660 |
| BmgT120I | GGNCC | 3 cut(s) | 15, 645, 660 |
| BmiI | GGNNCC | 3 cut(s) | 647, 925, 958 |
| BmrFI | CCNGG | 3 cut(s) | 64, 292, 516 |
| BmsI | GCATC | 2 cut(s) | 604, 915 |
| BpiI | GAAGAC | 1 cut(s) | 239 |
| BpmI | CTGGAG | 1 cut(s) | 341 |
| BpuEI | CTTGAG | 1 cut(s) | 55 |
| BsaJI | CCNNGG | 5 cut(s) | 11, 291, 515, 663, 838 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 344, 374, 584, 614 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 123, 610, 861 |
| Bse118I | RCCGGY | 1 cut(s) | 926 |
| BseBI | CCWGG | 3 cut(s) | 64, 292, 516 |
| BseDI | CCNNGG | 5 cut(s) | 11, 291, 515, 663, 838 |
| BseGI | GGATG | 3 cut(s) | 223, 619, 906 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 123, 610, 861 |
| BseMII | CTCAG | 2 cut(s) | 630, 927 |
| BseRI | GAGGAG | 2 cut(s) | 605, 814 |
| BseXI | GCAGC | 1 cut(s) | 905 |
| BsgI | GTGCAG | 1 cut(s) | 444 |
| BshFI | GGCC | 4 cut(s) | 16, 249, 646, 930 |
| BshNI | GGYRCC | 2 cut(s) | 923, 956 |
| BsiHKAI | GWGCWC | 2 cut(s) | 172, 226 |
| BsiSI | CCGG | 1 cut(s) | 927 |
| BslFI | GGGAC | 1 cut(s) | 586 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 123, 610, 861 |
| BsmFI | GGGAC | 1 cut(s) | 586 |
| BsnI | GGCC | 4 cut(s) | 16, 249, 646, 930 |
| Bsp1286I | GDGCHC | 2 cut(s) | 172, 226 |
| Bsp143I | GATC | 5 cut(s) | 54, 200, 465, 532, 735 |
| Bsp19I | CCATGG | 2 cut(s) | 663, 838 |
| BspANI | GGCC | 4 cut(s) | 16, 249, 646, 930 |
| BspCNI | CTCAG | 2 cut(s) | 631, 928 |
| BspHI | TCATGA | 1 cut(s) | 525 |
| BspLI | GGNNCC | 3 cut(s) | 647, 925, 958 |
| BspPI | GGATC | 1 cut(s) | 540 |
| BspT107I | GGYRCC | 2 cut(s) | 923, 956 |
| BsrFI | RCCGGY | 1 cut(s) | 926 |
| BssAI | RCCGGY | 1 cut(s) | 926 |
| BssECI | CCNNGG | 5 cut(s) | 11, 291, 515, 663, 838 |
| BssMI | GATC | 5 cut(s) | 54, 200, 465, 532, 735 |
| BssT1I | CCWWGG | 3 cut(s) | 11, 663, 838 |
| Bst2UI | CCWGG | 3 cut(s) | 64, 292, 516 |
| Bst4CI | ACNGT | 1 cut(s) | 104 |
| Bst6I | CTCTTC | 2 cut(s) | 438, 771 |
| BstC8I | GCNNGC | 2 cut(s) | 193, 928 |
| BstDEI | CTNAG | 2 cut(s) | 639, 936 |
| BstDSI | CCRYGG | 2 cut(s) | 663, 838 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 608 |
| BstF5I | GGATG | 3 cut(s) | 223, 619, 906 |
| BstH2I | RGCGCY | 1 cut(s) | 91 |
| BstHHI | GCGC | 1 cut(s) | 90 |
| BstKTI | GATC | 5 cut(s) | 57, 203, 468, 535, 738 |
| BstMBI | GATC | 5 cut(s) | 54, 200, 465, 532, 735 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 643, 932 |
| BstNI | CCWGG | 3 cut(s) | 64, 292, 516 |
| BstNSI | RCATGY | 3 cut(s) | 437, 700, 993 |
| BstSCI | CCNGG | 3 cut(s) | 62, 290, 514 |
| BstSFI | CTRYAG | 3 cut(s) | 103, 196, 264 |
| BstV1I | GCAGC | 1 cut(s) | 905 |
| BstV2I | GAAGAC | 1 cut(s) | 239 |
| BstX2I | RGATCY | 1 cut(s) | 54 |
| BstYI | RGATCY | 1 cut(s) | 54 |
| BsuRI | GGCC | 4 cut(s) | 16, 249, 646, 930 |
| BtgI | CCRYGG | 2 cut(s) | 663, 838 |
| BtsCI | GGATG | 3 cut(s) | 223, 619, 906 |
| Cac8I | GCNNGC | 2 cut(s) | 193, 928 |
| CaiI | CAGNNNCTG | 1 cut(s) | 999 |
| CciI | TCATGA | 1 cut(s) | 525 |
| CfoI | GCGC | 1 cut(s) | 90 |
| Cfr10I | RCCGGY | 1 cut(s) | 926 |
| Cfr13I | GGNCC | 3 cut(s) | 15, 645, 660 |
| CviAII | CATG | 6 cut(s) | 434, 526, 664, 697, 839, 990 |
| DdeI | CTNAG | 2 cut(s) | 639, 936 |
| DpnI | GATC | 5 cut(s) | 56, 202, 467, 534, 737 |
| DpnII | GATC | 5 cut(s) | 54, 200, 465, 532, 735 |
| EaeI | YGGCCR | 2 cut(s) | 247, 928 |
| Eam1104I | CTCTTC | 2 cut(s) | 438, 771 |
| EarI | CTCTTC | 2 cut(s) | 438, 771 |
| Ecl136II | GAGCTC | 2 cut(s) | 170, 224 |
| Eco130I | CCWWGG | 3 cut(s) | 11, 663, 838 |
| Eco24I | GRGCYC | 2 cut(s) | 172, 226 |
| Eco47I | GGWCC | 1 cut(s) | 660 |
| Eco47III | AGCGCT | 1 cut(s) | 89 |
| Eco53kI | GAGCTC | 2 cut(s) | 170, 224 |
| Eco57I | CTGAAG | 2 cut(s) | 194, 809 |
| EcoICRI | GAGCTC | 2 cut(s) | 170, 224 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 608 |
| EcoO109I | RGGNCCY | 2 cut(s) | 15, 645 |
| EcoRII | CCWGG | 3 cut(s) | 62, 290, 514 |
| EcoT14I | CCWWGG | 3 cut(s) | 11, 663, 838 |
| EcoT22I | ATGCAT | 1 cut(s) | 439 |
| EcoT38I | GRGCYC | 2 cut(s) | 172, 226 |
| ErhI | CCWWGG | 3 cut(s) | 11, 663, 838 |
| FaeI | CATG | 6 cut(s) | 437, 529, 667, 700, 842, 993 |
| FaqI | GGGAC | 1 cut(s) | 586 |
| FatI | CATG | 6 cut(s) | 433, 525, 663, 696, 838, 989 |
| FbaI | TGATCA | 1 cut(s) | 735 |
| FblI | GTMKAC | 1 cut(s) | 972 |
| Fnu4HI | GCNGC | 1 cut(s) | 894 |
| FokI | GGATG | 3 cut(s) | 230, 626, 893 |
| FriOI | GRGCYC | 2 cut(s) | 172, 226 |
| Fsp4HI | GCNGC | 1 cut(s) | 894 |
| FspBI | CTAG | 3 cut(s) | 12, 35, 135 |
| GlaI | GCGC | 1 cut(s) | 89 |
| GluI | GCNGC | 1 cut(s) | 894 |
| GsuI | CTGGAG | 1 cut(s) | 341 |
| HaeII | RGCGCY | 1 cut(s) | 91 |
| HaeIII | GGCC | 4 cut(s) | 16, 249, 646, 930 |
| HapII | CCGG | 1 cut(s) | 927 |
| HhaI | GCGC | 1 cut(s) | 90 |
| Hin1II | CATG | 6 cut(s) | 437, 529, 667, 700, 842, 993 |
| Hin6I | GCGC | 1 cut(s) | 88 |
| HinP1I | GCGC | 1 cut(s) | 88 |
| HincII | GTYRAC | 1 cut(s) | 973 |
| HindII | GTYRAC | 1 cut(s) | 973 |
| HinfI | GANTC | 3 cut(s) | 82, 332, 805 |
| HpaII | CCGG | 1 cut(s) | 927 |
| HphI | GGTGA | 2 cut(s) | 140, 493 |
| Hpy166II | GTNNAC | 2 cut(s) | 492, 973 |
| Hpy188I | TCNGA | 5 cut(s) | 44, 118, 174, 537, 740 |
| Hpy188III | TCNNGA | 1 cut(s) | 526 |
| Hpy8I | GTNNAC | 2 cut(s) | 492, 973 |
| HpyAV | CCTTC | 7 cut(s) | 28, 523, 574, 784, 810, 883, 947 |
| HpyCH4III | ACNGT | 1 cut(s) | 104 |
| HpyCH4V | TGCA | 8 cut(s) | 363, 437, 461, 479, 551, 557, 906, 993 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 643, 932 |
| HpyF3I | CTNAG | 2 cut(s) | 639, 936 |
| Hsp92II | CATG | 6 cut(s) | 437, 529, 667, 700, 842, 993 |
| HspAI | GCGC | 1 cut(s) | 88 |
| KroI | GCCGGC | 1 cut(s) | 926 |
| KroNI | GCCGGC | 1 cut(s) | 928 |
| Ksp22I | TGATCA | 1 cut(s) | 735 |
| Kzo9I | GATC | 5 cut(s) | 54, 200, 465, 532, 735 |
| LmnI | GCTCC | 3 cut(s) | 167, 221, 592 |
| Lsp1109I | GCAGC | 1 cut(s) | 905 |
| LweI | GCATC | 2 cut(s) | 604, 915 |
| MaeI | CTAG | 3 cut(s) | 12, 35, 135 |
| MaeIII | GTNAC | 1 cut(s) | 692 |
| MalI | GATC | 5 cut(s) | 56, 202, 467, 534, 737 |
| MboI | GATC | 5 cut(s) | 54, 200, 465, 532, 735 |
| MboII | GAAGA | 5 cut(s) | 187, 244, 455, 788, 889 |
| MflI | RGATCY | 1 cut(s) | 54 |
| MhlI | GDGCHC | 2 cut(s) | 172, 226 |
| MlsI | TGGCCA | 1 cut(s) | 249 |
| MluCI | AATT | 1 cut(s) | 844 |
| MluNI | TGGCCA | 1 cut(s) | 249 |
| MlyI | GAGTC | 1 cut(s) | 326 |
| MmeI | TCCRAC | 1 cut(s) | 753 |
| Mox20I | TGGCCA | 1 cut(s) | 249 |
| Mph1103I | ATGCAT | 1 cut(s) | 439 |
| MroNI | GCCGGC | 1 cut(s) | 926 |
| MroXI | GAANNNNTTC | 1 cut(s) | 182 |
| MscI | TGGCCA | 1 cut(s) | 249 |
| MseI | TTAA | 2 cut(s) | 273, 918 |
| Msp20I | TGGCCA | 1 cut(s) | 249 |
| MspI | CCGG | 1 cut(s) | 927 |
| MspR9I | CCNGG | 3 cut(s) | 64, 292, 516 |
| MvaI | CCWGG | 3 cut(s) | 64, 292, 516 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 643, 932 |
| NaeI | GCCGGC | 1 cut(s) | 928 |
| NcoI | CCATGG | 2 cut(s) | 663, 838 |
| NdeII | GATC | 5 cut(s) | 54, 200, 465, 532, 735 |
| NgoMIV | GCCGGC | 1 cut(s) | 926 |
| NlaIII | CATG | 6 cut(s) | 437, 529, 667, 700, 842, 993 |
| NlaIV | GGNNCC | 3 cut(s) | 647, 925, 958 |
| NmeAIII | GCCGAG | 1 cut(s) | 76 |
| NmuCI | GTSAC | 1 cut(s) | 692 |
| NsiI | ATGCAT | 1 cut(s) | 439 |
| NspI | RCATGY | 3 cut(s) | 437, 700, 993 |
| PagI | TCATGA | 1 cut(s) | 525 |
| PdiI | GCCGGC | 1 cut(s) | 928 |
| PdmI | GAANNNNTTC | 1 cut(s) | 182 |
| PfeI | GAWTC | 2 cut(s) | 82, 805 |
| PfoI | TCCNGGA | 1 cut(s) | 62 |
| PkrI | GCNGC | 1 cut(s) | 895 |
| PleI | GAGTC | 1 cut(s) | 326 |
| PpsI | GAGTC | 1 cut(s) | 326 |
| PshBI | ATTAAT | 1 cut(s) | 273 |
| PsiI | TTATAA | 1 cut(s) | 621 |
| Psp124BI | GAGCTC | 2 cut(s) | 172, 226 |
| Psp6I | CCWGG | 3 cut(s) | 62, 290, 514 |
| PspGI | CCWGG | 3 cut(s) | 62, 290, 514 |
| PspN4I | GGNNCC | 3 cut(s) | 647, 925, 958 |
| PspPI | GGNCC | 3 cut(s) | 15, 645, 660 |
| PstNI | CAGNNNCTG | 1 cut(s) | 999 |
| PsuI | RGATCY | 1 cut(s) | 54 |
| SacI | GAGCTC | 2 cut(s) | 172, 226 |
| SalI | GTCGAC | 1 cut(s) | 971 |
| SaqAI | TTAA | 2 cut(s) | 273, 918 |
| SatI | GCNGC | 1 cut(s) | 894 |
| Sau3AI | GATC | 5 cut(s) | 54, 200, 465, 532, 735 |
| Sau96I | GGNCC | 3 cut(s) | 15, 645, 660 |
| SchI | GAGTC | 1 cut(s) | 326 |
| ScrFI | CCNGG | 3 cut(s) | 64, 292, 516 |
| SduI | GDGCHC | 2 cut(s) | 172, 226 |
| SfaNI | GCATC | 2 cut(s) | 604, 915 |
| SfcI | CTRYAG | 3 cut(s) | 103, 196, 264 |
| SinI | GGWCC | 1 cut(s) | 660 |
| SmlI | CTYRAG | 1 cut(s) | 70 |
| SmoI | CTYRAG | 1 cut(s) | 70 |
| Sse9I | AATT | 1 cut(s) | 844 |
| SspI | AATATT | 1 cut(s) | 949 |
| SspMI | CTAG | 3 cut(s) | 12, 35, 135 |
| SstI | GAGCTC | 2 cut(s) | 172, 226 |
| StyD4I | CCNGG | 3 cut(s) | 62, 290, 514 |
| StyI | CCWWGG | 3 cut(s) | 11, 663, 838 |
| TaaI | ACNGT | 1 cut(s) | 104 |
| TaqI | TCGA | 1 cut(s) | 972 |
| TasI | AATT | 1 cut(s) | 844 |
| TfiI | GAWTC | 2 cut(s) | 82, 805 |
| Tru1I | TTAA | 2 cut(s) | 273, 918 |
| Tru9I | TTAA | 2 cut(s) | 273, 918 |
| TseFI | GTSAC | 1 cut(s) | 692 |
| TseI | GCWGC | 1 cut(s) | 893 |
| Tsp45I | GTSAC | 1 cut(s) | 692 |
| TspDTI | ATGAA | 3 cut(s) | 394, 542, 797 |
| TspGWI | ACGGA | 1 cut(s) | 83 |
| VpaK11BI | GGWCC | 1 cut(s) | 660 |
| VspI | ATTAAT | 1 cut(s) | 273 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 608 |
| XapI | RAATTY | 1 cut(s) | 844 |
| XceI | RCATGY | 3 cut(s) | 437, 700, 993 |
| XmaJI | CCTAGG | 1 cut(s) | 11 |
| XmiI | GTMKAC | 1 cut(s) | 972 |
| XmnI | GAANNNNTTC | 1 cut(s) | 182 |
| XspI | CTAG | 3 cut(s) | 12, 35, 135 |
| Zsp2I | ATGCAT | 1 cut(s) | 439 |