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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1010 |
| Acc36I | ACCTGC | 1 cut(s) | 721 |
| AccI | GTMKAC | 1 cut(s) | 69 |
| AclWI | GGATC | 1 cut(s) | 545 |
| AfaI | GTAC | 1 cut(s) | 158 |
| AgsI | TTSAA | 6 cut(s) | 105, 509, 614, 623, 827, 931 |
| AhlI | ACTAGT | 1 cut(s) | 791 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 136, 168, 858, 890 |
| AluBI | AGCT | 6 cut(s) | 54, 193, 455, 1004, 1091, 1111 |
| AluI | AGCT | 6 cut(s) | 54, 193, 455, 1004, 1091, 1111 |
| Alw21I | GWGCWC | 1 cut(s) | 1113 |
| Alw26I | GTCTC | 1 cut(s) | 756 |
| AlwI | GGATC | 1 cut(s) | 545 |
| ApeKI | GCWGC | 1 cut(s) | 1043 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 284, 316 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 384 |
| AsuHPI | GGTGA | 2 cut(s) | 121, 387 |
| BanII | GRGCYC | 1 cut(s) | 1113 |
| BbsI | GAAGAC | 2 cut(s) | 834, 1143 |
| Bbv12I | GWGCWC | 1 cut(s) | 1113 |
| BbvI | GCAGC | 1 cut(s) | 1055 |
| BccI | CCATC | 2 cut(s) | 814, 1088 |
| BclI | TGATCA | 1 cut(s) | 1149 |
| BcoDI | GTCTC | 1 cut(s) | 756 |
| BcuI | ACTAGT | 1 cut(s) | 791 |
| BfaI | CTAG | 3 cut(s) | 456, 792, 990 |
| BfmI | CTRYAG | 1 cut(s) | 369 |
| BfuAI | ACCTGC | 1 cut(s) | 721 |
| BglII | AGATCT | 1 cut(s) | 280 |
| BisI | GCNGC | 1 cut(s) | 1044 |
| BlsI | GCNGC | 1 cut(s) | 1045 |
| BmiI | GGNNCC | 2 cut(s) | 519, 540 |
| BmsI | GCATC | 4 cut(s) | 169, 199, 733, 1127 |
| BpiI | GAAGAC | 2 cut(s) | 834, 1143 |
| BpuEI | CTTGAG | 1 cut(s) | 339 |
| BsaJI | CCNNGG | 1 cut(s) | 398 |
| Bse3DI | GCAATG | 1 cut(s) | 846 |
| BseDI | CCNNGG | 1 cut(s) | 398 |
| BseGI | GGATG | 2 cut(s) | 214, 978 |
| BseMI | GCAATG | 1 cut(s) | 846 |
| BseMII | CTCAG | 5 cut(s) | 432, 751, 801, 906, 971 |
| BseRI | GAGGAG | 1 cut(s) | 527 |
| BseXI | GCAGC | 1 cut(s) | 1055 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1113 |
| BsmAI | GTCTC | 1 cut(s) | 756 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1113 |
| Bsp143I | GATC | 7 cut(s) | 271, 280, 321, 375, 550, 975, 1149 |
| BspCNI | CTCAG | 5 cut(s) | 431, 750, 802, 905, 970 |
| BspHI | TCATGA | 2 cut(s) | 241, 286 |
| BspLI | GGNNCC | 2 cut(s) | 519, 540 |
| BspMI | ACCTGC | 1 cut(s) | 721 |
| BspPI | GGATC | 1 cut(s) | 545 |
| BsrDI | GCAATG | 1 cut(s) | 846 |
| BssECI | CCNNGG | 1 cut(s) | 398 |
| BssMI | GATC | 7 cut(s) | 271, 280, 321, 375, 550, 975, 1149 |
| BssT1I | CCWWGG | 1 cut(s) | 398 |
| Bst4CI | ACNGT | 1 cut(s) | 692 |
| Bst6I | CTCTTC | 3 cut(s) | 504, 752, 1061 |
| BstC8I | GCNNGC | 1 cut(s) | 191 |
| BstDEI | CTNAG | 7 cut(s) | 185, 418, 737, 810, 892, 936, 957 |
| BstF5I | GGATG | 2 cut(s) | 214, 978 |
| BstKTI | GATC | 7 cut(s) | 274, 283, 324, 378, 553, 978, 1152 |
| BstMAI | GTCTC | 1 cut(s) | 756 |
| BstMBI | GATC | 7 cut(s) | 271, 280, 321, 375, 550, 975, 1149 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 536 |
| BstSFI | CTRYAG | 1 cut(s) | 369 |
| BstV1I | GCAGC | 1 cut(s) | 1055 |
| BstV2I | GAAGAC | 2 cut(s) | 834, 1143 |
| BstX2I | RGATCY | 1 cut(s) | 280 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 484 |
| BstYI | RGATCY | 1 cut(s) | 280 |
| BtsCI | GGATG | 2 cut(s) | 214, 978 |
| BtsIMutI | CAGTG | 2 cut(s) | 426, 745 |
| BveI | ACCTGC | 1 cut(s) | 721 |
| Cac8I | GCNNGC | 1 cut(s) | 191 |
| CciI | TCATGA | 2 cut(s) | 241, 286 |
| Csp6I | GTAC | 1 cut(s) | 157 |
| CviQI | GTAC | 1 cut(s) | 157 |
| DdeI | CTNAG | 7 cut(s) | 185, 418, 737, 810, 892, 936, 957 |
| DpnI | GATC | 7 cut(s) | 273, 282, 323, 377, 552, 977, 1151 |
| DpnII | GATC | 7 cut(s) | 271, 280, 321, 375, 550, 975, 1149 |
| DraI | TTTAAA | 1 cut(s) | 451 |
| Eam1104I | CTCTTC | 3 cut(s) | 504, 752, 1061 |
| EarI | CTCTTC | 3 cut(s) | 504, 752, 1061 |
| Ecl136II | GAGCTC | 1 cut(s) | 1111 |
| Eco130I | CCWWGG | 1 cut(s) | 398 |
| Eco24I | GRGCYC | 1 cut(s) | 1113 |
| Eco53kI | GAGCTC | 1 cut(s) | 1111 |
| EcoICRI | GAGCTC | 1 cut(s) | 1111 |
| EcoT14I | CCWWGG | 1 cut(s) | 398 |
| EcoT38I | GRGCYC | 1 cut(s) | 1113 |
| ErhI | CCWWGG | 1 cut(s) | 398 |
| FauNDI | CATATG | 1 cut(s) | 130 |
| FbaI | TGATCA | 1 cut(s) | 1149 |
| FblI | GTMKAC | 1 cut(s) | 69 |
| Fnu4HI | GCNGC | 1 cut(s) | 1044 |
| FokI | GGATG | 2 cut(s) | 221, 985 |
| FriOI | GRGCYC | 1 cut(s) | 1113 |
| Fsp4HI | GCNGC | 1 cut(s) | 1044 |
| FspBI | CTAG | 3 cut(s) | 456, 792, 990 |
| GluI | GCNGC | 1 cut(s) | 1044 |
| HincII | GTYRAC | 1 cut(s) | 70 |
| HindII | GTYRAC | 1 cut(s) | 70 |
| HinfI | GANTC | 3 cut(s) | 101, 392, 1139 |
| HphI | GGTGA | 2 cut(s) | 121, 387 |
| Hpy166II | GTNNAC | 1 cut(s) | 70 |
| Hpy188I | TCNGA | 1 cut(s) | 895 |
| Hpy188III | TCNNGA | 5 cut(s) | 242, 287, 389, 923, 1153 |
| Hpy8I | GTNNAC | 1 cut(s) | 70 |
| Hpy99I | CGWCG | 1 cut(s) | 866 |
| HpyAV | CCTTC | 1 cut(s) | 427 |
| HpyCH4III | ACNGT | 1 cut(s) | 692 |
| HpyCH4IV | ACGT | 1 cut(s) | 36 |
| HpyCH4V | TGCA | 8 cut(s) | 128, 341, 461, 701, 746, 1079, 1086, 1129 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 536 |
| HpyF3I | CTNAG | 7 cut(s) | 185, 418, 737, 810, 892, 936, 957 |
| HpySE526I | ACGT | 1 cut(s) | 36 |
| Ksp22I | TGATCA | 1 cut(s) | 1149 |
| Kzo9I | GATC | 7 cut(s) | 271, 280, 321, 375, 550, 975, 1149 |
| LmnI | GCTCC | 2 cut(s) | 328, 544 |
| LpnPI | CCDG | 8 cut(s) | 64, 120, 138, 189, 235, 402, 726, 1138 |
| Lsp1109I | GCAGC | 1 cut(s) | 1055 |
| LweI | GCATC | 4 cut(s) | 169, 199, 733, 1127 |
| MaeI | CTAG | 3 cut(s) | 456, 792, 990 |
| MaeII | ACGT | 1 cut(s) | 36 |
| MaeIII | GTNAC | 2 cut(s) | 200, 643 |
| MalI | GATC | 7 cut(s) | 273, 282, 323, 377, 552, 977, 1151 |
| MboI | GATC | 7 cut(s) | 271, 280, 321, 375, 550, 975, 1149 |
| MfeI | CAATTG | 1 cut(s) | 852 |
| MflI | RGATCY | 1 cut(s) | 280 |
| MhlI | GDGCHC | 1 cut(s) | 1113 |
| MluCI | AATT | 4 cut(s) | 48, 299, 852, 931 |
| MlyI | GAGTC | 1 cut(s) | 1133 |
| MmeI | TCCRAC | 2 cut(s) | 545, 766 |
| MroXI | GAANNNNTTC | 1 cut(s) | 384 |
| MseI | TTAA | 3 cut(s) | 450, 492, 1074 |
| MslI | CAYNNNNRTG | 3 cut(s) | 218, 224, 654 |
| MunI | CAATTG | 1 cut(s) | 852 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 536 |
| NdeI | CATATG | 1 cut(s) | 130 |
| NdeII | GATC | 7 cut(s) | 271, 280, 321, 375, 550, 975, 1149 |
| NlaIV | GGNNCC | 2 cut(s) | 519, 540 |
| NmuCI | GTSAC | 1 cut(s) | 200 |
| PagI | TCATGA | 2 cut(s) | 241, 286 |
| PdmI | GAANNNNTTC | 1 cut(s) | 384 |
| PfeI | GAWTC | 2 cut(s) | 101, 392 |
| PflFI | GACNNNGTC | 2 cut(s) | 65, 220 |
| PkrI | GCNGC | 1 cut(s) | 1045 |
| PleI | GAGTC | 1 cut(s) | 1133 |
| PpsI | GAGTC | 1 cut(s) | 1133 |
| PsiI | TTATAA | 1 cut(s) | 1010 |
| Psp124BI | GAGCTC | 1 cut(s) | 1113 |
| PspN4I | GGNNCC | 2 cut(s) | 519, 540 |
| PsuI | RGATCY | 1 cut(s) | 280 |
| PsyI | GACNNNGTC | 2 cut(s) | 65, 220 |
| RsaI | GTAC | 1 cut(s) | 158 |
| RsaNI | GTAC | 1 cut(s) | 157 |
| RseI | CAYNNNNRTG | 3 cut(s) | 218, 224, 654 |
| SacI | GAGCTC | 1 cut(s) | 1113 |
| SalI | GTCGAC | 1 cut(s) | 68 |
| SaqAI | TTAA | 3 cut(s) | 450, 492, 1074 |
| SatI | GCNGC | 1 cut(s) | 1044 |
| Sau3AI | GATC | 7 cut(s) | 271, 280, 321, 375, 550, 975, 1149 |
| SchI | GAGTC | 1 cut(s) | 1133 |
| SduI | GDGCHC | 1 cut(s) | 1113 |
| SfaNI | GCATC | 4 cut(s) | 169, 199, 733, 1127 |
| SfcI | CTRYAG | 1 cut(s) | 369 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 218, 224, 654 |
| SmlI | CTYRAG | 1 cut(s) | 354 |
| SmoI | CTYRAG | 1 cut(s) | 354 |
| SpeI | ACTAGT | 1 cut(s) | 791 |
| Sse9I | AATT | 4 cut(s) | 48, 299, 852, 931 |
| SspI | AATATT | 1 cut(s) | 1160 |
| SspMI | CTAG | 3 cut(s) | 456, 792, 990 |
| SstI | GAGCTC | 1 cut(s) | 1113 |
| StyI | CCWWGG | 1 cut(s) | 398 |
| TaaI | ACNGT | 1 cut(s) | 692 |
| TaiI | ACGT | 1 cut(s) | 39 |
| TaqI | TCGA | 6 cut(s) | 69, 378, 596, 861, 922, 1121 |
| TasI | AATT | 4 cut(s) | 48, 299, 852, 931 |
| TfiI | GAWTC | 2 cut(s) | 101, 392 |
| Tru1I | TTAA | 3 cut(s) | 450, 492, 1074 |
| Tru9I | TTAA | 3 cut(s) | 450, 492, 1074 |
| TscAI | CASTG | 2 cut(s) | 426, 745 |
| TseFI | GTSAC | 1 cut(s) | 200 |
| TseI | GCWGC | 1 cut(s) | 1043 |
| Tsp45I | GTSAC | 1 cut(s) | 200 |
| TspRI | CASTG | 2 cut(s) | 426, 745 |
| Tth111I | GACNNNGTC | 2 cut(s) | 65, 220 |
| XmiI | GTMKAC | 1 cut(s) | 69 |
| XmnI | GAANNNNTTC | 1 cut(s) | 384 |
| XspI | CTAG | 3 cut(s) | 456, 792, 990 |