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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 492 |
| AciI | CCGC | 1 cut(s) | 23 |
| AclWI | GGATC | 1 cut(s) | 252 |
| AcsI | RAATTY | 1 cut(s) | 278 |
| AcuI | CTGAAG | 3 cut(s) | 179, 192, 269 |
| AfaI | GTAC | 1 cut(s) | 626 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 347, 370 |
| AflIII | ACRYGT | 2 cut(s) | 60, 621 |
| AgsI | TTSAA | 6 cut(s) | 80, 103, 283, 455, 593, 664 |
| AjnI | CCWGG | 2 cut(s) | 382, 649 |
| AluBI | AGCT | 2 cut(s) | 157, 596 |
| AluI | AGCT | 2 cut(s) | 157, 596 |
| Alw21I | GWGCWC | 1 cut(s) | 8 |
| Alw26I | GTCTC | 1 cut(s) | 215 |
| Alw44I | GTGCAC | 1 cut(s) | 4 |
| AlwI | GGATC | 1 cut(s) | 252 |
| AoxI | GGCC | 1 cut(s) | 338 |
| ApaLI | GTGCAC | 1 cut(s) | 4 |
| ApeKI | GCWGC | 1 cut(s) | 360 |
| ApoI | RAATTY | 1 cut(s) | 278 |
| AspLEI | GCGC | 1 cut(s) | 493 |
| AspS9I | GGNCC | 1 cut(s) | 653 |
| AvaII | GGWCC | 1 cut(s) | 653 |
| BaeGI | GKGCMC | 1 cut(s) | 8 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 409, 442 |
| BbsI | GAAGAC | 1 cut(s) | 257 |
| Bbv12I | GWGCWC | 1 cut(s) | 8 |
| BbvI | GCAGC | 1 cut(s) | 347 |
| BccI | CCATC | 3 cut(s) | 315, 350, 493 |
| BciT130I | CCWGG | 2 cut(s) | 384, 651 |
| BcoDI | GTCTC | 1 cut(s) | 215 |
| BisI | GCNGC | 1 cut(s) | 361 |
| BlsI | GCNGC | 1 cut(s) | 362 |
| Bme1390I | CCNGG | 2 cut(s) | 384, 651 |
| Bme18I | GGWCC | 1 cut(s) | 653 |
| BmgT120I | GGNCC | 1 cut(s) | 653 |
| BmrFI | CCNGG | 2 cut(s) | 384, 651 |
| BmsI | GCATC | 4 cut(s) | 295, 403, 517, 559 |
| BpiI | GAAGAC | 1 cut(s) | 257 |
| BpmI | CTGGAG | 1 cut(s) | 151 |
| BpuEI | CTTGAG | 1 cut(s) | 347 |
| BsaI | GGTCTC | 1 cut(s) | 215 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 347, 370 |
| Bse3DI | GCAATG | 1 cut(s) | 486 |
| BseBI | CCWGG | 2 cut(s) | 384, 651 |
| BseGI | GGATG | 4 cut(s) | 274, 326, 532, 574 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 347, 370 |
| BseMI | GCAATG | 1 cut(s) | 486 |
| BseSI | GKGCMC | 1 cut(s) | 8 |
| BseXI | GCAGC | 1 cut(s) | 347 |
| BshFI | GGCC | 1 cut(s) | 340 |
| BsiHKAI | GWGCWC | 1 cut(s) | 8 |
| BslFI | GGGAC | 1 cut(s) | 387 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 347, 370 |
| BsmAI | GTCTC | 1 cut(s) | 215 |
| BsmFI | GGGAC | 1 cut(s) | 387 |
| BsnI | GGCC | 1 cut(s) | 340 |
| Bso31I | GGTCTC | 1 cut(s) | 215 |
| Bsp1286I | GDGCHC | 1 cut(s) | 8 |
| Bsp1407I | TGTACA | 1 cut(s) | 624 |
| Bsp143I | GATC | 2 cut(s) | 244, 505 |
| BspACI | CCGC | 1 cut(s) | 23 |
| BspANI | GGCC | 1 cut(s) | 340 |
| BspPI | GGATC | 1 cut(s) | 252 |
| BspTNI | GGTCTC | 1 cut(s) | 215 |
| BsrDI | GCAATG | 1 cut(s) | 486 |
| BsrGI | TGTACA | 1 cut(s) | 624 |
| BssMI | GATC | 2 cut(s) | 244, 505 |
| Bst2UI | CCWGG | 2 cut(s) | 384, 651 |
| Bst4CI | ACNGT | 1 cut(s) | 241 |
| Bst6I | CTCTTC | 1 cut(s) | 32 |
| BstAUI | TGTACA | 1 cut(s) | 624 |
| BstC8I | GCNNGC | 1 cut(s) | 310 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 345 |
| BstF5I | GGATG | 4 cut(s) | 274, 326, 532, 574 |
| BstHHI | GCGC | 1 cut(s) | 493 |
| BstKTI | GATC | 2 cut(s) | 247, 508 |
| BstMAI | GTCTC | 1 cut(s) | 215 |
| BstMBI | GATC | 2 cut(s) | 244, 505 |
| BstNI | CCWGG | 2 cut(s) | 384, 651 |
| BstNSI | RCATGY | 2 cut(s) | 64, 625 |
| BstSCI | CCNGG | 2 cut(s) | 382, 649 |
| BstSLI | GKGCMC | 1 cut(s) | 8 |
| BstV1I | GCAGC | 1 cut(s) | 347 |
| BstV2I | GAAGAC | 1 cut(s) | 257 |
| BstX2I | RGATCY | 1 cut(s) | 244 |
| BstYI | RGATCY | 1 cut(s) | 244 |
| BsuRI | GGCC | 1 cut(s) | 340 |
| BtsCI | GGATG | 4 cut(s) | 274, 326, 532, 574 |
| BtsIMutI | CAGTG | 3 cut(s) | 123, 168, 246 |
| Cac8I | GCNNGC | 1 cut(s) | 310 |
| CfoI | GCGC | 1 cut(s) | 493 |
| Cfr13I | GGNCC | 1 cut(s) | 653 |
| Csp6I | GTAC | 1 cut(s) | 625 |
| CviAII | CATG | 4 cut(s) | 61, 365, 622, 670 |
| CviJI | RGCY | 6 cut(s) | 157, 325, 340, 360, 503, 596 |
| CviKI_1 | RGCY | 6 cut(s) | 157, 325, 340, 360, 503, 596 |
| CviQI | GTAC | 1 cut(s) | 625 |
| DpnI | GATC | 2 cut(s) | 246, 507 |
| DpnII | GATC | 2 cut(s) | 244, 505 |
| DraI | TTTAAA | 1 cut(s) | 637 |
| Eam1104I | CTCTTC | 1 cut(s) | 32 |
| EarI | CTCTTC | 1 cut(s) | 32 |
| Eco31I | GGTCTC | 1 cut(s) | 215 |
| Eco47I | GGWCC | 1 cut(s) | 653 |
| Eco57I | CTGAAG | 3 cut(s) | 179, 192, 269 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 345 |
| EcoRII | CCWGG | 2 cut(s) | 382, 649 |
| FaeI | CATG | 4 cut(s) | 64, 368, 625, 673 |
| FaqI | GGGAC | 1 cut(s) | 387 |
| FatI | CATG | 4 cut(s) | 60, 364, 621, 669 |
| FauI | CCCGC | 1 cut(s) | 16 |
| FauNDI | CATATG | 1 cut(s) | 202 |
| Fnu4HI | GCNGC | 1 cut(s) | 361 |
| FokI | GGATG | 4 cut(s) | 281, 333, 539, 581 |
| Fsp4HI | GCNGC | 1 cut(s) | 361 |
| FspI | TGCGCA | 1 cut(s) | 492 |
| GlaI | GCGC | 1 cut(s) | 492 |
| GluI | GCNGC | 1 cut(s) | 361 |
| GsuI | CTGGAG | 1 cut(s) | 151 |
| HaeIII | GGCC | 1 cut(s) | 340 |
| HhaI | GCGC | 1 cut(s) | 493 |
| Hin1II | CATG | 4 cut(s) | 64, 368, 625, 673 |
| Hin6I | GCGC | 1 cut(s) | 491 |
| HinP1I | GCGC | 1 cut(s) | 491 |
| HindIII | AAGCTT | 1 cut(s) | 155 |
| Hpy166II | GTNNAC | 1 cut(s) | 6 |
| Hpy188I | TCNGA | 5 cut(s) | 36, 198, 249, 510, 547 |
| Hpy188III | TCNNGA | 5 cut(s) | 66, 80, 92, 130, 590 |
| Hpy8I | GTNNAC | 1 cut(s) | 6 |
| HpyAV | CCTTC | 1 cut(s) | 158 |
| HpyCH4III | ACNGT | 1 cut(s) | 241 |
| HpyCH4V | TGCA | 6 cut(s) | 6, 45, 206, 217, 312, 572 |
| Hsp92II | CATG | 4 cut(s) | 64, 368, 625, 673 |
| HspAI | GCGC | 1 cut(s) | 491 |
| Kzo9I | GATC | 2 cut(s) | 244, 505 |
| LpnPI | CCDG | 9 cut(s) | 77, 79, 115, 369, 396, 507, 551, 636, 663 |
| Lsp1109I | GCAGC | 1 cut(s) | 347 |
| LweI | GCATC | 4 cut(s) | 295, 403, 517, 559 |
| MalI | GATC | 2 cut(s) | 246, 507 |
| MboI | GATC | 2 cut(s) | 244, 505 |
| MboII | GAAGA | 3 cut(s) | 49, 262, 421 |
| MflI | RGATCY | 1 cut(s) | 244 |
| MhlI | GDGCHC | 1 cut(s) | 8 |
| MluCI | AATT | 2 cut(s) | 278, 631 |
| MmeI | TCCRAC | 1 cut(s) | 455 |
| MnlI | CCTC | 5 cut(s) | 33, 126, 256, 311, 322 |
| MseI | TTAA | 4 cut(s) | 159, 369, 576, 636 |
| MspR9I | CCNGG | 2 cut(s) | 384, 651 |
| MvaI | CCWGG | 2 cut(s) | 384, 651 |
| NdeI | CATATG | 1 cut(s) | 202 |
| NdeII | GATC | 2 cut(s) | 244, 505 |
| NlaIII | CATG | 4 cut(s) | 64, 368, 625, 673 |
| NsbI | TGCGCA | 1 cut(s) | 492 |
| NspI | RCATGY | 2 cut(s) | 64, 625 |
| PciI | ACATGT | 2 cut(s) | 60, 621 |
| PfoI | TCCNGGA | 1 cut(s) | 382 |
| PkrI | GCNGC | 1 cut(s) | 362 |
| PscI | ACATGT | 2 cut(s) | 60, 621 |
| Psp6I | CCWGG | 2 cut(s) | 382, 649 |
| PspGI | CCWGG | 2 cut(s) | 382, 649 |
| PspPI | GGNCC | 1 cut(s) | 653 |
| PsuI | RGATCY | 1 cut(s) | 244 |
| RsaI | GTAC | 1 cut(s) | 626 |
| RsaNI | GTAC | 1 cut(s) | 625 |
| SaqAI | TTAA | 4 cut(s) | 159, 369, 576, 636 |
| SatI | GCNGC | 1 cut(s) | 361 |
| Sau3AI | GATC | 2 cut(s) | 244, 505 |
| Sau96I | GGNCC | 1 cut(s) | 653 |
| ScrFI | CCNGG | 2 cut(s) | 384, 651 |
| SduI | GDGCHC | 1 cut(s) | 8 |
| SetI | ASST | 4 cut(s) | 44, 159, 352, 598 |
| SfaNI | GCATC | 4 cut(s) | 295, 403, 517, 559 |
| SinI | GGWCC | 1 cut(s) | 653 |
| SmlI | CTYRAG | 1 cut(s) | 326 |
| SmoI | CTYRAG | 1 cut(s) | 326 |
| Sse9I | AATT | 2 cut(s) | 278, 631 |
| SsiI | CCGC | 1 cut(s) | 23 |
| StyD4I | CCNGG | 2 cut(s) | 382, 649 |
| TaaI | ACNGT | 1 cut(s) | 241 |
| TasI | AATT | 2 cut(s) | 278, 631 |
| TatI | WGTACW | 1 cut(s) | 624 |
| Tru1I | TTAA | 4 cut(s) | 159, 369, 576, 636 |
| Tru9I | TTAA | 4 cut(s) | 159, 369, 576, 636 |
| TscAI | CASTG | 3 cut(s) | 123, 175, 246 |
| TseI | GCWGC | 1 cut(s) | 360 |
| TspDTI | ATGAA | 3 cut(s) | 177, 475, 530 |
| TspRI | CASTG | 3 cut(s) | 123, 175, 246 |
| VneI | GTGCAC | 1 cut(s) | 4 |
| VpaK11BI | GGWCC | 1 cut(s) | 653 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 345 |
| XapI | RAATTY | 1 cut(s) | 278 |
| XceI | RCATGY | 2 cut(s) | 64, 625 |