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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 571, 880 |
| Acc65I | GGTACC | 1 cut(s) | 1137 |
| AccB1I | GGYRCC | 3 cut(s) | 580, 806, 1137 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1274, 1403 |
| AclWI | GGATC | 9 cut(s) | 411, 669, 1093, 1208, 1221, 1285, 1298, 1780, 1793 |
| AdeI | CACNNNGTG | 1 cut(s) | 1459 |
| AfaI | GTAC | 4 cut(s) | 216, 284, 1139, 1328 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 338, 339, 1066, 1274, 1403, 1473 |
| AflIII | ACRYGT | 1 cut(s) | 1118 |
| AjnI | CCWGG | 3 cut(s) | 419, 643, 1109 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1711, 1743 |
| Alw21I | GWGCWC | 1 cut(s) | 799 |
| Alw26I | GTCTC | 5 cut(s) | 139, 440, 942, 1183, 1735 |
| AlwI | GGATC | 9 cut(s) | 411, 669, 1093, 1208, 1221, 1285, 1298, 1780, 1793 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 235 |
| Ama87I | CYCGRG | 1 cut(s) | 210 |
| AoxI | GGCC | 6 cut(s) | 126, 329, 696, 773, 1346, 1557 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 773, 805 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 653 |
| Asp718I | GGTACC | 1 cut(s) | 1137 |
| AspS9I | GGNCC | 7 cut(s) | 126, 330, 621, 736, 774, 970, 1394 |
| AsuC2I | CCSGG | 1 cut(s) | 1790 |
| AsuHPI | GGTGA | 2 cut(s) | 502, 1219 |
| AvaI | CYCGRG | 1 cut(s) | 210 |
| AvaII | GGWCC | 4 cut(s) | 621, 736, 970, 1394 |
| BamHI | GGATCC | 3 cut(s) | 1213, 1290, 1785 |
| BanI | GGYRCC | 3 cut(s) | 580, 806, 1137 |
| BanII | GRGCYC | 1 cut(s) | 799 |
| BbsI | GAAGAC | 3 cut(s) | 1209, 1469, 1589 |
| Bbv12I | GWGCWC | 1 cut(s) | 799 |
| BccI | CCATC | 4 cut(s) | 301, 341, 818, 1128 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 191, 225 |
| BciT130I | CCWGG | 3 cut(s) | 421, 645, 1111 |
| BcnI | CCSGG | 1 cut(s) | 1790 |
| BcoDI | GTCTC | 5 cut(s) | 139, 440, 942, 1183, 1735 |
| BfaI | CTAG | 6 cut(s) | 344, 792, 876, 990, 1001, 1296 |
| BfmI | CTRYAG | 1 cut(s) | 1689 |
| BfuAI | ACCTGC | 2 cut(s) | 571, 880 |
| Bme1390I | CCNGG | 4 cut(s) | 421, 645, 1111, 1790 |
| Bme18I | GGWCC | 4 cut(s) | 621, 736, 970, 1394 |
| BmeT110I | CYCGRG | 1 cut(s) | 210 |
| BmgT120I | GGNCC | 7 cut(s) | 126, 330, 621, 736, 774, 970, 1394 |
| BmrFI | CCNGG | 4 cut(s) | 421, 645, 1111, 1790 |
| BmrI | ACTGGG | 1 cut(s) | 1457 |
| BmsI | GCATC | 7 cut(s) | 314, 1360, 1382, 1486, 1541, 1679, 1688 |
| BmuI | ACTGGG | 1 cut(s) | 1457 |
| BpiI | GAAGAC | 3 cut(s) | 1209, 1469, 1589 |
| BpuEI | CTTGAG | 1 cut(s) | 203 |
| BpuMI | CCSGG | 1 cut(s) | 1790 |
| BsaI | GGTCTC | 1 cut(s) | 1735 |
| BsaJI | CCNNGG | 5 cut(s) | 420, 644, 693, 1488, 1560 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1105, 1135 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 338, 339, 1066, 1274, 1403, 1473 |
| Bse1I | ACTGG | 4 cut(s) | 758, 1268, 1452, 1745 |
| Bse3DI | GCAATG | 1 cut(s) | 945 |
| BseBI | CCWGG | 3 cut(s) | 421, 645, 1111 |
| BseDI | CCNNGG | 5 cut(s) | 420, 644, 693, 1488, 1560 |
| BseGI | GGATG | 3 cut(s) | 329, 810, 1651 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 338, 339, 1066, 1274, 1403, 1473 |
| BseMI | GCAATG | 1 cut(s) | 945 |
| BseMII | CTCAG | 3 cut(s) | 1337, 1380, 1568 |
| BseNI | ACTGG | 4 cut(s) | 758, 1268, 1452, 1745 |
| BshFI | GGCC | 6 cut(s) | 128, 331, 698, 775, 1348, 1559 |
| BshNI | GGYRCC | 3 cut(s) | 580, 806, 1137 |
| BsiHKAI | GWGCWC | 1 cut(s) | 799 |
| BsiHKCI | CYCGRG | 1 cut(s) | 210 |
| BsiSI | CCGG | 1 cut(s) | 1789 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 338, 339, 1066, 1274, 1403, 1473 |
| BsmAI | GTCTC | 5 cut(s) | 139, 440, 942, 1183, 1735 |
| BsmBI | CGTCTC | 1 cut(s) | 440 |
| BsnI | GGCC | 6 cut(s) | 128, 331, 698, 775, 1348, 1559 |
| Bso31I | GGTCTC | 1 cut(s) | 1735 |
| BsoBI | CYCGRG | 1 cut(s) | 210 |
| Bsp1286I | GDGCHC | 1 cut(s) | 799 |
| Bsp143I | GATC | 6 cut(s) | 403, 661, 1085, 1213, 1290, 1785 |
| Bsp19I | CCATGG | 1 cut(s) | 693 |
| BspANI | GGCC | 6 cut(s) | 128, 331, 698, 775, 1348, 1559 |
| BspCNI | CTCAG | 3 cut(s) | 1336, 1381, 1567 |
| BspHI | TCATGA | 1 cut(s) | 1185 |
| BspMI | ACCTGC | 2 cut(s) | 571, 880 |
| BspPI | GGATC | 9 cut(s) | 411, 669, 1093, 1208, 1221, 1285, 1298, 1780, 1793 |
| BspQI | GCTCTTC | 2 cut(s) | 182, 1612 |
| BspT107I | GGYRCC | 3 cut(s) | 580, 806, 1137 |
| BspTNI | GGTCTC | 1 cut(s) | 1735 |
| BsrDI | GCAATG | 1 cut(s) | 945 |
| BsrI | ACTGG | 4 cut(s) | 758, 1268, 1452, 1745 |
| BssECI | CCNNGG | 5 cut(s) | 420, 644, 693, 1488, 1560 |
| BssMI | GATC | 6 cut(s) | 403, 661, 1085, 1213, 1290, 1785 |
| BssT1I | CCWWGG | 3 cut(s) | 693, 1488, 1560 |
| Bst2UI | CCWGG | 3 cut(s) | 421, 645, 1111 |
| Bst4CI | ACNGT | 1 cut(s) | 1261 |
| Bst6I | CTCTTC | 6 cut(s) | 182, 356, 923, 940, 1502, 1612 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1155 |
| BstC8I | GCNNGC | 3 cut(s) | 329, 1160, 1164 |
| BstDEI | CTNAG | 6 cut(s) | 1089, 1323, 1389, 1503, 1554, 1611 |
| BstDSI | CCRYGG | 1 cut(s) | 693 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1471 |
| BstF5I | GGATG | 3 cut(s) | 329, 810, 1651 |
| BstKTI | GATC | 6 cut(s) | 406, 664, 1088, 1216, 1293, 1788 |
| BstMAI | GTCTC | 5 cut(s) | 139, 440, 942, 1183, 1735 |
| BstMBI | GATC | 6 cut(s) | 403, 661, 1085, 1213, 1290, 1785 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 572, 781, 1155, 1172, 1440, 1667, 1676 |
| BstNI | CCWGG | 3 cut(s) | 421, 645, 1111 |
| BstNSI | RCATGY | 4 cut(s) | 570, 1122, 1128, 1166 |
| BstSCI | CCNGG | 4 cut(s) | 419, 643, 1109, 1788 |
| BstSFI | CTRYAG | 1 cut(s) | 1689 |
| BstV2I | GAAGAC | 3 cut(s) | 1209, 1469, 1589 |
| BstX2I | RGATCY | 4 cut(s) | 1085, 1213, 1290, 1785 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 715, 786 |
| BstYI | RGATCY | 4 cut(s) | 1085, 1213, 1290, 1785 |
| BsuRI | GGCC | 6 cut(s) | 128, 331, 698, 775, 1348, 1559 |
| BtgI | CCRYGG | 1 cut(s) | 693 |
| BtsCI | GGATG | 3 cut(s) | 329, 810, 1651 |
| BtsI | GCAGTG | 1 cut(s) | 399 |
| BtsIMutI | CAGTG | 2 cut(s) | 399, 1275 |
| BveI | ACCTGC | 2 cut(s) | 571, 880 |
| Cac8I | GCNNGC | 3 cut(s) | 329, 1160, 1164 |
| CaiI | CAGNNNCTG | 1 cut(s) | 235 |
| CciI | TCATGA | 1 cut(s) | 1185 |
| Cfr13I | GGNCC | 7 cut(s) | 126, 330, 621, 736, 774, 970, 1394 |
| Csp6I | GTAC | 4 cut(s) | 215, 283, 1138, 1327 |
| CviQI | GTAC | 4 cut(s) | 215, 283, 1138, 1327 |
| DdeI | CTNAG | 6 cut(s) | 1089, 1323, 1389, 1503, 1554, 1611 |
| DpnI | GATC | 6 cut(s) | 405, 663, 1087, 1215, 1292, 1787 |
| DpnII | GATC | 6 cut(s) | 403, 661, 1085, 1213, 1290, 1785 |
| DraIII | CACNNNGTG | 1 cut(s) | 1459 |
| Eam1104I | CTCTTC | 6 cut(s) | 182, 356, 923, 940, 1502, 1612 |
| EarI | CTCTTC | 6 cut(s) | 182, 356, 923, 940, 1502, 1612 |
| Ecl136II | GAGCTC | 1 cut(s) | 797 |
| Eco130I | CCWWGG | 3 cut(s) | 693, 1488, 1560 |
| Eco24I | GRGCYC | 1 cut(s) | 799 |
| Eco31I | GGTCTC | 1 cut(s) | 1735 |
| Eco47I | GGWCC | 4 cut(s) | 621, 736, 970, 1394 |
| Eco53kI | GAGCTC | 1 cut(s) | 797 |
| Eco88I | CYCGRG | 1 cut(s) | 210 |
| EcoICRI | GAGCTC | 1 cut(s) | 797 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1471 |
| EcoO109I | RGGNCCY | 1 cut(s) | 774 |
| EcoRII | CCWGG | 3 cut(s) | 419, 643, 1109 |
| EcoT14I | CCWWGG | 3 cut(s) | 693, 1488, 1560 |
| EcoT22I | ATGCAT | 1 cut(s) | 1375 |
| EcoT38I | GRGCYC | 1 cut(s) | 799 |
| ErhI | CCWWGG | 3 cut(s) | 693, 1488, 1560 |
| Esp3I | CGTCTC | 1 cut(s) | 440 |
| FauNDI | CATATG | 2 cut(s) | 1042, 1095 |
| FokI | GGATG | 3 cut(s) | 336, 797, 1658 |
| FriOI | GRGCYC | 1 cut(s) | 799 |
| FspBI | CTAG | 6 cut(s) | 344, 792, 876, 990, 1001, 1296 |
| HaeIII | GGCC | 6 cut(s) | 128, 331, 698, 775, 1348, 1559 |
| HapII | CCGG | 1 cut(s) | 1789 |
| HincII | GTYRAC | 1 cut(s) | 759 |
| HindII | GTYRAC | 1 cut(s) | 759 |
| HindIII | AAGCTT | 5 cut(s) | 147, 744, 1075, 1400, 1761 |
| HinfI | GANTC | 6 cut(s) | 61, 132, 248, 461, 1385, 1604 |
| HpaI | GTTAAC | 1 cut(s) | 759 |
| HpaII | CCGG | 1 cut(s) | 1789 |
| HphI | GGTGA | 2 cut(s) | 502, 1219 |
| Hpy166II | GTNNAC | 5 cut(s) | 621, 759, 970, 1249, 1304 |
| Hpy188I | TCNGA | 4 cut(s) | 276, 541, 1378, 1390 |
| Hpy188III | TCNNGA | 4 cut(s) | 65, 792, 814, 1186 |
| Hpy8I | GTNNAC | 5 cut(s) | 621, 759, 970, 1249, 1304 |
| HpyAV | CCTTC | 5 cut(s) | 51, 157, 190, 1648, 1737 |
| HpyCH4III | ACNGT | 1 cut(s) | 1261 |
| HpyCH4IV | ACGT | 2 cut(s) | 285, 599 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 572, 781, 1155, 1172, 1440, 1667, 1676 |
| HpyF3I | CTNAG | 6 cut(s) | 1089, 1323, 1389, 1503, 1554, 1611 |
| HpySE526I | ACGT | 2 cut(s) | 285, 599 |
| KpnI | GGTACC | 1 cut(s) | 1141 |
| KspAI | GTTAAC | 1 cut(s) | 759 |
| Kzo9I | GATC | 6 cut(s) | 403, 661, 1085, 1213, 1290, 1785 |
| LguI | GCTCTTC | 2 cut(s) | 182, 1612 |
| LmnI | GCTCC | 2 cut(s) | 199, 232 |
| LweI | GCATC | 7 cut(s) | 314, 1360, 1382, 1486, 1541, 1679, 1688 |
| MaeI | CTAG | 6 cut(s) | 344, 792, 876, 990, 1001, 1296 |
| MaeII | ACGT | 2 cut(s) | 285, 599 |
| MaeIII | GTNAC | 1 cut(s) | 1451 |
| MalI | GATC | 6 cut(s) | 405, 663, 1087, 1215, 1292, 1787 |
| MboI | GATC | 6 cut(s) | 403, 661, 1085, 1213, 1290, 1785 |
| MfeI | CAATTG | 2 cut(s) | 49, 675 |
| MflI | RGATCY | 4 cut(s) | 1085, 1213, 1290, 1785 |
| MhlI | GDGCHC | 1 cut(s) | 799 |
| MluCI | AATT | 4 cut(s) | 49, 625, 675, 838 |
| MlyI | GAGTC | 2 cut(s) | 141, 1394 |
| MmeI | TCCRAC | 1 cut(s) | 506 |
| Mph1103I | ATGCAT | 1 cut(s) | 1375 |
| MroXI | GAANNNNTTC | 1 cut(s) | 653 |
| MseI | TTAA | 5 cut(s) | 758, 834, 918, 1017, 1365 |
| MslI | CAYNNNNRTG | 2 cut(s) | 20, 1123 |
| MspA1I | CMGCKG | 2 cut(s) | 116, 1694 |
| MspI | CCGG | 1 cut(s) | 1789 |
| MspR9I | CCNGG | 4 cut(s) | 421, 645, 1111, 1790 |
| MunI | CAATTG | 2 cut(s) | 49, 675 |
| MvaI | CCWGG | 3 cut(s) | 421, 645, 1111 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 572, 781, 1155, 1172, 1440, 1667, 1676 |
| NciI | CCSGG | 1 cut(s) | 1790 |
| NcoI | CCATGG | 1 cut(s) | 693 |
| NdeI | CATATG | 2 cut(s) | 1042, 1095 |
| NdeII | GATC | 6 cut(s) | 403, 661, 1085, 1213, 1290, 1785 |
| NmuCI | GTSAC | 1 cut(s) | 1451 |
| NsiI | ATGCAT | 1 cut(s) | 1375 |
| NspI | RCATGY | 4 cut(s) | 570, 1122, 1128, 1166 |
| PaeI | GCATGC | 1 cut(s) | 1166 |
| PaeR7I | CTCGAG | 1 cut(s) | 210 |
| PagI | TCATGA | 1 cut(s) | 1185 |
| PciI | ACATGT | 1 cut(s) | 1118 |
| PciSI | GCTCTTC | 2 cut(s) | 182, 1612 |
| PdmI | GAANNNNTTC | 1 cut(s) | 653 |
| PfeI | GAWTC | 4 cut(s) | 61, 248, 461, 1604 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1274, 1403 |
| PfoI | TCCNGGA | 1 cut(s) | 1788 |
| PleI | GAGTC | 2 cut(s) | 140, 1393 |
| PpsI | GAGTC | 2 cut(s) | 140, 1393 |
| PscI | ACATGT | 1 cut(s) | 1118 |
| Psp124BI | GAGCTC | 1 cut(s) | 799 |
| Psp6I | CCWGG | 3 cut(s) | 419, 643, 1109 |
| PspGI | CCWGG | 3 cut(s) | 419, 643, 1109 |
| PspPI | GGNCC | 7 cut(s) | 126, 330, 621, 736, 774, 970, 1394 |
| PspXI | VCTCGAGB | 1 cut(s) | 210 |
| PstNI | CAGNNNCTG | 1 cut(s) | 235 |
| PsuI | RGATCY | 4 cut(s) | 1085, 1213, 1290, 1785 |
| PvuII | CAGCTG | 2 cut(s) | 116, 1694 |
| RsaI | GTAC | 4 cut(s) | 216, 284, 1139, 1328 |
| RsaNI | GTAC | 4 cut(s) | 215, 283, 1138, 1327 |
| RseI | CAYNNNNRTG | 2 cut(s) | 20, 1123 |
| SacI | GAGCTC | 1 cut(s) | 799 |
| SapI | GCTCTTC | 2 cut(s) | 182, 1612 |
| SaqAI | TTAA | 5 cut(s) | 758, 834, 918, 1017, 1365 |
| Sau3AI | GATC | 6 cut(s) | 403, 661, 1085, 1213, 1290, 1785 |
| Sau96I | GGNCC | 7 cut(s) | 126, 330, 621, 736, 774, 970, 1394 |
| SchI | GAGTC | 2 cut(s) | 141, 1394 |
| ScrFI | CCNGG | 4 cut(s) | 421, 645, 1111, 1790 |
| SduI | GDGCHC | 1 cut(s) | 799 |
| SfaNI | GCATC | 7 cut(s) | 314, 1360, 1382, 1486, 1541, 1679, 1688 |
| SfcI | CTRYAG | 1 cut(s) | 1689 |
| Sfr274I | CTCGAG | 1 cut(s) | 210 |
| SinI | GGWCC | 4 cut(s) | 621, 736, 970, 1394 |
| SlaI | CTCGAG | 1 cut(s) | 210 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 20, 1123 |
| SmlI | CTYRAG | 2 cut(s) | 182, 210 |
| SmoI | CTYRAG | 2 cut(s) | 182, 210 |
| SphI | GCATGC | 1 cut(s) | 1166 |
| Sse9I | AATT | 4 cut(s) | 49, 625, 675, 838 |
| SspMI | CTAG | 6 cut(s) | 344, 792, 876, 990, 1001, 1296 |
| SstI | GAGCTC | 1 cut(s) | 799 |
| StyD4I | CCNGG | 4 cut(s) | 419, 643, 1109, 1788 |
| StyI | CCWWGG | 3 cut(s) | 693, 1488, 1560 |
| TaaI | ACNGT | 1 cut(s) | 1261 |
| TaiI | ACGT | 2 cut(s) | 288, 602 |
| TaqI | TCGA | 4 cut(s) | 55, 211, 406, 1580 |
| TasI | AATT | 4 cut(s) | 49, 625, 675, 838 |
| TatI | WGTACW | 2 cut(s) | 214, 1326 |
| TfiI | GAWTC | 4 cut(s) | 61, 248, 461, 1604 |
| Tru1I | TTAA | 5 cut(s) | 758, 834, 918, 1017, 1365 |
| Tru9I | TTAA | 5 cut(s) | 758, 834, 918, 1017, 1365 |
| TscAI | CASTG | 2 cut(s) | 399, 1275 |
| TseFI | GTSAC | 1 cut(s) | 1451 |
| Tsp45I | GTSAC | 1 cut(s) | 1451 |
| TspGWI | ACGGA | 1 cut(s) | 464 |
| TspRI | CASTG | 2 cut(s) | 399, 1275 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1274, 1403 |
| VpaK11BI | GGWCC | 4 cut(s) | 621, 736, 970, 1394 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1471 |
| XbaI | TCTAGA | 1 cut(s) | 791 |
| XceI | RCATGY | 4 cut(s) | 570, 1122, 1128, 1166 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1237 |
| XhoI | CTCGAG | 1 cut(s) | 210 |
| XmnI | GAANNNNTTC | 1 cut(s) | 653 |
| XspI | CTAG | 6 cut(s) | 344, 792, 876, 990, 1001, 1296 |
| Zsp2I | ATGCAT | 1 cut(s) | 1375 |