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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 109 |
| AccIII | TCCGGA | 1 cut(s) | 668 |
| AclWI | GGATC | 1 cut(s) | 1321 |
| AcoI | YGGCCR | 1 cut(s) | 1388 |
| AcsI | RAATTY | 3 cut(s) | 686, 1178, 1206 |
| AcuI | CTGAAG | 5 cut(s) | 213, 426, 456, 489, 873 |
| AfaI | GTAC | 2 cut(s) | 85, 1113 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 352 |
| AflIII | ACRYGT | 1 cut(s) | 247 |
| AhlI | ACTAGT | 2 cut(s) | 125, 517 |
| AjnI | CCWGG | 1 cut(s) | 1309 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 993, 1025 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1305, 1337 |
| Alw26I | GTCTC | 1 cut(s) | 715 |
| AlwI | GGATC | 1 cut(s) | 1321 |
| Aor13HI | TCCGGA | 1 cut(s) | 668 |
| AoxI | GGCC | 9 cut(s) | 260, 365, 413, 443, 476, 509, 600, 1227, 1388 |
| ApeKI | GCWGC | 6 cut(s) | 67, 293, 401, 497, 662, 701 |
| ApoI | RAATTY | 3 cut(s) | 686, 1178, 1206 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 486, 519 |
| AspA2I | CCTAGG | 1 cut(s) | 236 |
| AspS9I | GGNCC | 2 cut(s) | 343, 1013 |
| AsuHPI | GGTGA | 2 cut(s) | 1358, 1363 |
| AsuII | TTCGAA | 1 cut(s) | 924 |
| AvaII | GGWCC | 2 cut(s) | 343, 1013 |
| AvrII | CCTAGG | 1 cut(s) | 236 |
| BaeGI | GKGCMC | 1 cut(s) | 114 |
| BalI | TGGCCA | 1 cut(s) | 1390 |
| BanI | GGYRCC | 1 cut(s) | 109 |
| BanII | GRGCYC | 1 cut(s) | 236 |
| BbsI | GAAGAC | 1 cut(s) | 1125 |
| BbvCI | CCTCAGC | 1 cut(s) | 1298 |
| BbvI | GCAGC | 6 cut(s) | 79, 280, 413, 484, 649, 688 |
| BccI | CCATC | 7 cut(s) | 8, 44, 131, 938, 1238, 1333, 1380 |
| BceAI | ACGGC | 1 cut(s) | 247 |
| BciT130I | CCWGG | 1 cut(s) | 1311 |
| BcoDI | GTCTC | 1 cut(s) | 715 |
| BcuI | ACTAGT | 2 cut(s) | 125, 517 |
| BfaI | CTAG | 4 cut(s) | 126, 237, 518, 984 |
| BfmI | CTRYAG | 3 cut(s) | 333, 417, 1317 |
| BisI | GCNGC | 6 cut(s) | 68, 294, 402, 498, 663, 702 |
| BlnI | CCTAGG | 1 cut(s) | 236 |
| BlsI | GCNGC | 6 cut(s) | 69, 295, 403, 499, 664, 703 |
| Bme1390I | CCNGG | 1 cut(s) | 1311 |
| Bme18I | GGWCC | 2 cut(s) | 343, 1013 |
| BmgT120I | GGNCC | 2 cut(s) | 343, 1013 |
| BmiI | GGNNCC | 2 cut(s) | 111, 233 |
| BmrFI | CCNGG | 1 cut(s) | 1311 |
| BmsI | GCATC | 4 cut(s) | 311, 674, 713, 1146 |
| BpiI | GAAGAC | 1 cut(s) | 1125 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1047, 1298 |
| Bpu14I | TTCGAA | 1 cut(s) | 924 |
| BpuEI | CTTGAG | 3 cut(s) | 282, 781, 986 |
| BsaJI | CCNNGG | 4 cut(s) | 236, 263, 506, 1309 |
| BsaWI | WCCGGW | 1 cut(s) | 668 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 571, 601, 725, 755 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 352 |
| Bse1I | ACTGG | 2 cut(s) | 452, 485 |
| BseAI | TCCGGA | 1 cut(s) | 668 |
| BseBI | CCWGG | 1 cut(s) | 1311 |
| BseDI | CCNNGG | 4 cut(s) | 236, 263, 506, 1309 |
| BseGI | GGATG | 8 cut(s) | 55, 626, 665, 704, 1138, 1161, 1242, 1391 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 352 |
| BseMII | CTCAG | 5 cut(s) | 48, 312, 843, 1038, 1289 |
| BseNI | ACTGG | 2 cut(s) | 452, 485 |
| BseRI | GAGGAG | 6 cut(s) | 77, 198, 711, 1151, 1315, 1369 |
| BseSI | GKGCMC | 1 cut(s) | 114 |
| BseXI | GCAGC | 6 cut(s) | 79, 280, 413, 484, 649, 688 |
| BsgI | GTGCAG | 1 cut(s) | 884 |
| BshFI | GGCC | 9 cut(s) | 262, 367, 415, 445, 478, 511, 602, 1229, 1390 |
| BshNI | GGYRCC | 1 cut(s) | 109 |
| BsiSI | CCGG | 1 cut(s) | 669 |
| BslFI | GGGAC | 1 cut(s) | 967 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 352 |
| BsmAI | GTCTC | 1 cut(s) | 715 |
| BsmFI | GGGAC | 1 cut(s) | 967 |
| BsmI | GAATGC | 1 cut(s) | 938 |
| BsnI | GGCC | 9 cut(s) | 262, 367, 415, 445, 478, 511, 602, 1229, 1390 |
| Bsp119I | TTCGAA | 1 cut(s) | 924 |
| Bsp1286I | GDGCHC | 2 cut(s) | 114, 236 |
| Bsp13I | TCCGGA | 1 cut(s) | 668 |
| Bsp143I | GATC | 3 cut(s) | 349, 1313, 1326 |
| BspANI | GGCC | 9 cut(s) | 262, 367, 415, 445, 478, 511, 602, 1229, 1390 |
| BspCNI | CTCAG | 5 cut(s) | 47, 313, 842, 1039, 1290 |
| BspEI | TCCGGA | 1 cut(s) | 668 |
| BspLI | GGNNCC | 2 cut(s) | 111, 233 |
| BspMAI | CTGCAG | 1 cut(s) | 421 |
| BspPI | GGATC | 1 cut(s) | 1321 |
| BspT104I | TTCGAA | 1 cut(s) | 924 |
| BspT107I | GGYRCC | 1 cut(s) | 109 |
| BsrI | ACTGG | 2 cut(s) | 452, 485 |
| BssECI | CCNNGG | 4 cut(s) | 236, 263, 506, 1309 |
| BssMI | GATC | 3 cut(s) | 349, 1313, 1326 |
| BssT1I | CCWWGG | 2 cut(s) | 236, 506 |
| Bst2UI | CCWGG | 1 cut(s) | 1311 |
| Bst4CI | ACNGT | 2 cut(s) | 791, 1321 |
| Bst6I | CTCTTC | 4 cut(s) | 251, 538, 777, 897 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 416 |
| BstBI | TTCGAA | 1 cut(s) | 924 |
| BstC8I | GCNNGC | 4 cut(s) | 72, 417, 1063, 1199 |
| BstDEI | CTNAG | 6 cut(s) | 34, 98, 321, 829, 1047, 1298 |
| BstDSI | CCRYGG | 1 cut(s) | 263 |
| BstF5I | GGATG | 8 cut(s) | 55, 626, 665, 704, 1138, 1161, 1242, 1391 |
| BstKTI | GATC | 3 cut(s) | 352, 1316, 1329 |
| BstMAI | GTCTC | 1 cut(s) | 715 |
| BstMBI | GATC | 3 cut(s) | 349, 1313, 1326 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 299, 407, 416, 620, 659 |
| BstNI | CCWGG | 1 cut(s) | 1311 |
| BstNSI | RCATGY | 2 cut(s) | 251, 1201 |
| BstSCI | CCNGG | 1 cut(s) | 1309 |
| BstSFI | CTRYAG | 3 cut(s) | 333, 417, 1317 |
| BstSLI | GKGCMC | 1 cut(s) | 114 |
| BstV1I | GCAGC | 6 cut(s) | 79, 280, 413, 484, 649, 688 |
| BstV2I | GAAGAC | 1 cut(s) | 1125 |
| BstX2I | RGATCY | 1 cut(s) | 1313 |
| BstYI | RGATCY | 1 cut(s) | 1313 |
| BsuRI | GGCC | 9 cut(s) | 262, 367, 415, 445, 478, 511, 602, 1229, 1390 |
| BtgI | CCRYGG | 1 cut(s) | 263 |
| BtsCI | GGATG | 8 cut(s) | 55, 626, 665, 704, 1138, 1161, 1242, 1391 |
| BtsI | GCAGTG | 1 cut(s) | 943 |
| BtsIMutI | CAGTG | 2 cut(s) | 796, 943 |
| Cac8I | GCNNGC | 4 cut(s) | 72, 417, 1063, 1199 |
| Cfr13I | GGNCC | 2 cut(s) | 343, 1013 |
| Csp6I | GTAC | 2 cut(s) | 84, 1112 |
| CviAII | CATG | 3 cut(s) | 148, 248, 1198 |
| CviQI | GTAC | 2 cut(s) | 84, 1112 |
| DdeI | CTNAG | 6 cut(s) | 34, 98, 321, 829, 1047, 1298 |
| DpnI | GATC | 3 cut(s) | 351, 1315, 1328 |
| DpnII | GATC | 3 cut(s) | 349, 1313, 1326 |
| EaeI | YGGCCR | 1 cut(s) | 1388 |
| Eam1104I | CTCTTC | 4 cut(s) | 251, 538, 777, 897 |
| EarI | CTCTTC | 4 cut(s) | 251, 538, 777, 897 |
| Eco130I | CCWWGG | 2 cut(s) | 236, 506 |
| Eco147I | AGGCCT | 4 cut(s) | 415, 445, 478, 511 |
| Eco24I | GRGCYC | 1 cut(s) | 236 |
| Eco47I | GGWCC | 2 cut(s) | 343, 1013 |
| Eco57I | CTGAAG | 5 cut(s) | 213, 426, 456, 489, 873 |
| EcoRII | CCWGG | 1 cut(s) | 1309 |
| EcoT14I | CCWWGG | 2 cut(s) | 236, 506 |
| EcoT38I | GRGCYC | 1 cut(s) | 236 |
| ErhI | CCWWGG | 2 cut(s) | 236, 506 |
| FaeI | CATG | 3 cut(s) | 151, 251, 1201 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 993, 1025 |
| FaqI | GGGAC | 1 cut(s) | 967 |
| FatI | CATG | 3 cut(s) | 147, 247, 1197 |
| FauNDI | CATATG | 1 cut(s) | 958 |
| Fnu4HI | GCNGC | 6 cut(s) | 68, 294, 402, 498, 663, 702 |
| FokI | GGATG | 7 cut(s) | 62, 613, 652, 691, 1145, 1168, 1249 |
| FriOI | GRGCYC | 1 cut(s) | 236 |
| Fsp4HI | GCNGC | 6 cut(s) | 68, 294, 402, 498, 663, 702 |
| FspBI | CTAG | 4 cut(s) | 126, 237, 518, 984 |
| GluI | GCNGC | 6 cut(s) | 68, 294, 402, 498, 663, 702 |
| HaeIII | GGCC | 9 cut(s) | 262, 367, 415, 445, 478, 511, 602, 1229, 1390 |
| HapII | CCGG | 1 cut(s) | 669 |
| Hin1II | CATG | 3 cut(s) | 151, 251, 1201 |
| HinfI | GANTC | 8 cut(s) | 32, 278, 617, 794, 809, 827, 848, 1075 |
| HpaII | CCGG | 1 cut(s) | 669 |
| HphI | GGTGA | 2 cut(s) | 1358, 1363 |
| Hpy188I | TCNGA | 7 cut(s) | 37, 193, 814, 832, 853, 891, 1326 |
| Hpy188III | TCNNGA | 8 cut(s) | 491, 669, 804, 984, 1033, 1147, 1212, 1330 |
| HpyCH4III | ACNGT | 2 cut(s) | 791, 1321 |
| HpyCH4V | TGCA | 8 cut(s) | 419, 665, 704, 865, 936, 1061, 1159, 1201 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 299, 407, 416, 620, 659 |
| HpyF3I | CTNAG | 6 cut(s) | 34, 98, 321, 829, 1047, 1298 |
| Hsp92II | CATG | 3 cut(s) | 151, 251, 1201 |
| Kpn2I | TCCGGA | 1 cut(s) | 668 |
| Kzo9I | GATC | 3 cut(s) | 349, 1313, 1326 |
| LmnI | GCTCC | 5 cut(s) | 64, 231, 567, 698, 1302 |
| Lsp1109I | GCAGC | 6 cut(s) | 79, 280, 413, 484, 649, 688 |
| LweI | GCATC | 4 cut(s) | 311, 674, 713, 1146 |
| MaeI | CTAG | 4 cut(s) | 126, 237, 518, 984 |
| MaeIII | GTNAC | 5 cut(s) | 101, 143, 167, 791, 1280 |
| MalI | GATC | 3 cut(s) | 351, 1315, 1328 |
| MboI | GATC | 3 cut(s) | 349, 1313, 1326 |
| MfeI | CAATTG | 1 cut(s) | 390 |
| MflI | RGATCY | 1 cut(s) | 1313 |
| MhlI | GDGCHC | 2 cut(s) | 114, 236 |
| MlsI | TGGCCA | 1 cut(s) | 1390 |
| MluCI | AATT | 8 cut(s) | 25, 163, 308, 369, 390, 686, 1178, 1206 |
| MluNI | TGGCCA | 1 cut(s) | 1390 |
| MlyI | GAGTC | 5 cut(s) | 26, 287, 788, 821, 1084 |
| MmeI | TCCRAC | 1 cut(s) | 673 |
| Mox20I | TGGCCA | 1 cut(s) | 1390 |
| MroI | TCCGGA | 1 cut(s) | 668 |
| MroXI | GAANNNNTTC | 2 cut(s) | 486, 519 |
| MscI | TGGCCA | 1 cut(s) | 1390 |
| MseI | TTAA | 3 cut(s) | 90, 372, 1371 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1056 |
| Msp20I | TGGCCA | 1 cut(s) | 1390 |
| MspA1I | CMGCKG | 3 cut(s) | 404, 467, 662 |
| MspI | CCGG | 1 cut(s) | 669 |
| MspR9I | CCNGG | 1 cut(s) | 1311 |
| MunI | CAATTG | 1 cut(s) | 390 |
| Mva1269I | GAATGC | 1 cut(s) | 938 |
| MvaI | CCWGG | 1 cut(s) | 1311 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 299, 407, 416, 620, 659 |
| NdeI | CATATG | 1 cut(s) | 958 |
| NdeII | GATC | 3 cut(s) | 349, 1313, 1326 |
| NlaIII | CATG | 3 cut(s) | 151, 251, 1201 |
| NlaIV | GGNNCC | 2 cut(s) | 111, 233 |
| NmuCI | GTSAC | 3 cut(s) | 101, 143, 791 |
| NspI | RCATGY | 2 cut(s) | 251, 1201 |
| NspV | TTCGAA | 1 cut(s) | 924 |
| PaeI | GCATGC | 1 cut(s) | 1201 |
| PceI | AGGCCT | 4 cut(s) | 415, 445, 478, 511 |
| PciI | ACATGT | 1 cut(s) | 247 |
| PctI | GAATGC | 1 cut(s) | 938 |
| PdmI | GAANNNNTTC | 2 cut(s) | 486, 519 |
| PfeI | GAWTC | 3 cut(s) | 617, 809, 848 |
| PkrI | GCNGC | 6 cut(s) | 69, 295, 403, 499, 664, 703 |
| PleI | GAGTC | 5 cut(s) | 26, 286, 788, 821, 1083 |
| PpsI | GAGTC | 5 cut(s) | 26, 286, 788, 821, 1083 |
| PscI | ACATGT | 1 cut(s) | 247 |
| Psp6I | CCWGG | 1 cut(s) | 1309 |
| PspGI | CCWGG | 1 cut(s) | 1309 |
| PspN4I | GGNNCC | 2 cut(s) | 111, 233 |
| PspPI | GGNCC | 2 cut(s) | 343, 1013 |
| PstI | CTGCAG | 1 cut(s) | 421 |
| PsuI | RGATCY | 1 cut(s) | 1313 |
| PvuII | CAGCTG | 3 cut(s) | 404, 467, 662 |
| RsaI | GTAC | 2 cut(s) | 85, 1113 |
| RsaNI | GTAC | 2 cut(s) | 84, 1112 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1056 |
| SaqAI | TTAA | 3 cut(s) | 90, 372, 1371 |
| SatI | GCNGC | 6 cut(s) | 68, 294, 402, 498, 663, 702 |
| Sau3AI | GATC | 3 cut(s) | 349, 1313, 1326 |
| Sau96I | GGNCC | 2 cut(s) | 343, 1013 |
| SchI | GAGTC | 5 cut(s) | 26, 287, 788, 821, 1084 |
| ScrFI | CCNGG | 1 cut(s) | 1311 |
| SduI | GDGCHC | 2 cut(s) | 114, 236 |
| SfaNI | GCATC | 4 cut(s) | 311, 674, 713, 1146 |
| SfcI | CTRYAG | 3 cut(s) | 333, 417, 1317 |
| SfuI | TTCGAA | 1 cut(s) | 924 |
| SinI | GGWCC | 2 cut(s) | 343, 1013 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1056 |
| SmlI | CTYRAG | 3 cut(s) | 297, 796, 965 |
| SmoI | CTYRAG | 3 cut(s) | 297, 796, 965 |
| SpeI | ACTAGT | 2 cut(s) | 125, 517 |
| SphI | GCATGC | 1 cut(s) | 1201 |
| Sse9I | AATT | 8 cut(s) | 25, 163, 308, 369, 390, 686, 1178, 1206 |
| SseBI | AGGCCT | 4 cut(s) | 415, 445, 478, 511 |
| SspMI | CTAG | 4 cut(s) | 126, 237, 518, 984 |
| StuI | AGGCCT | 4 cut(s) | 415, 445, 478, 511 |
| StyD4I | CCNGG | 1 cut(s) | 1309 |
| StyI | CCWWGG | 2 cut(s) | 236, 506 |
| TaaI | ACNGT | 2 cut(s) | 791, 1321 |
| TaqI | TCGA | 1 cut(s) | 924 |
| TasI | AATT | 8 cut(s) | 25, 163, 308, 369, 390, 686, 1178, 1206 |
| TatI | WGTACW | 1 cut(s) | 1111 |
| TfiI | GAWTC | 3 cut(s) | 617, 809, 848 |
| Tru1I | TTAA | 3 cut(s) | 90, 372, 1371 |
| Tru9I | TTAA | 3 cut(s) | 90, 372, 1371 |
| TscAI | CASTG | 2 cut(s) | 796, 943 |
| TseFI | GTSAC | 3 cut(s) | 101, 143, 791 |
| TseI | GCWGC | 6 cut(s) | 67, 293, 401, 497, 662, 701 |
| Tsp45I | GTSAC | 3 cut(s) | 101, 143, 791 |
| TspDTI | ATGAA | 4 cut(s) | 214, 1014, 1253, 1352 |
| TspRI | CASTG | 2 cut(s) | 796, 943 |
| VpaK11BI | GGWCC | 2 cut(s) | 343, 1013 |
| XapI | RAATTY | 3 cut(s) | 686, 1178, 1206 |
| XbaI | TCTAGA | 1 cut(s) | 983 |
| XceI | RCATGY | 2 cut(s) | 251, 1201 |
| XmaJI | CCTAGG | 1 cut(s) | 236 |
| XmnI | GAANNNNTTC | 2 cut(s) | 486, 519 |
| XspI | CTAG | 4 cut(s) | 126, 237, 518, 984 |