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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 50 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 162 |
| AccIII | TCCGGA | 1 cut(s) | 375 |
| AciI | CCGC | 3 cut(s) | 175, 192, 213 |
| AclWI | GGATC | 1 cut(s) | 291 |
| AcoI | YGGCCR | 1 cut(s) | 153 |
| AcyI | GRCGYC | 1 cut(s) | 51 |
| AfaI | GTAC | 1 cut(s) | 206 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 88, 162, 174, 375 |
| AflIII | ACRYGT | 1 cut(s) | 346 |
| AgsI | TTSAA | 2 cut(s) | 358, 442 |
| AjnI | CCWGG | 3 cut(s) | 45, 87, 161 |
| AluBI | AGCT | 6 cut(s) | 6, 133, 339, 373, 382, 390 |
| AluI | AGCT | 6 cut(s) | 6, 133, 339, 373, 382, 390 |
| Alw21I | GWGCWC | 3 cut(s) | 8, 375, 392 |
| Alw26I | GTCTC | 3 cut(s) | 67, 193, 299 |
| AlwI | GGATC | 1 cut(s) | 291 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 286 |
| Aor13HI | TCCGGA | 1 cut(s) | 375 |
| AoxI | GGCC | 4 cut(s) | 79, 153, 165, 425 |
| ApaI | GGGCCC | 1 cut(s) | 169 |
| ApeKI | GCWGC | 2 cut(s) | 172, 336 |
| AspLEI | GCGC | 1 cut(s) | 53 |
| AspS9I | GGNCC | 7 cut(s) | 165, 166, 177, 216, 253, 366, 426 |
| AsuC2I | CCSGG | 1 cut(s) | 152 |
| AsuHPI | GGTGA | 1 cut(s) | 394 |
| AvaII | GGWCC | 4 cut(s) | 177, 216, 253, 366 |
| BaeGI | GKGCMC | 1 cut(s) | 169 |
| BanI | GGYRCC | 1 cut(s) | 50 |
| BanII | GRGCYC | 5 cut(s) | 8, 77, 169, 375, 392 |
| BauI | CACGAG | 1 cut(s) | 383 |
| BbsI | GAAGAC | 1 cut(s) | 343 |
| Bbv12I | GWGCWC | 3 cut(s) | 8, 375, 392 |
| BbvI | GCAGC | 2 cut(s) | 184, 348 |
| BccI | CCATC | 3 cut(s) | 149, 222, 278 |
| BciT130I | CCWGG | 3 cut(s) | 47, 89, 163 |
| BcnI | CCSGG | 1 cut(s) | 152 |
| BcoDI | GTCTC | 3 cut(s) | 67, 193, 299 |
| BfmI | CTRYAG | 1 cut(s) | 170 |
| BfoI | RGCGCY | 1 cut(s) | 54 |
| BisI | GCNGC | 2 cut(s) | 173, 337 |
| BlsI | GCNGC | 2 cut(s) | 174, 338 |
| Bme1390I | CCNGG | 4 cut(s) | 47, 89, 152, 163 |
| Bme18I | GGWCC | 4 cut(s) | 177, 216, 253, 366 |
| BmgT120I | GGNCC | 7 cut(s) | 165, 166, 177, 216, 253, 366, 426 |
| BmiI | GGNNCC | 7 cut(s) | 52, 76, 93, 167, 217, 254, 322 |
| BmrFI | CCNGG | 4 cut(s) | 47, 89, 152, 163 |
| BmrI | ACTGGG | 1 cut(s) | 247 |
| BmuI | ACTGGG | 1 cut(s) | 247 |
| BoxI | GACNNNNGTC | 1 cut(s) | 251 |
| BpiI | GAAGAC | 1 cut(s) | 343 |
| BpmI | CTGGAG | 4 cut(s) | 8, 119, 244, 308 |
| Bpu10I | CCTNAGC | 1 cut(s) | 279 |
| BpuEI | CTTGAG | 1 cut(s) | 113 |
| BpuMI | CCSGG | 1 cut(s) | 152 |
| BsaHI | GRCGYC | 1 cut(s) | 51 |
| BsaI | GGTCTC | 1 cut(s) | 299 |
| BsaJI | CCNNGG | 4 cut(s) | 46, 150, 162, 195 |
| BsaWI | WCCGGW | 2 cut(s) | 363, 375 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 88, 162, 174, 375 |
| Bse118I | RCCGGY | 1 cut(s) | 209 |
| Bse1I | ACTGG | 1 cut(s) | 242 |
| BseAI | TCCGGA | 1 cut(s) | 375 |
| BseBI | CCWGG | 3 cut(s) | 47, 89, 163 |
| BseDI | CCNNGG | 4 cut(s) | 46, 150, 162, 195 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 88, 162, 174, 375 |
| BseMII | CTCAG | 1 cut(s) | 293 |
| BseNI | ACTGG | 1 cut(s) | 242 |
| BseRI | GAGGAG | 3 cut(s) | 136, 314, 317 |
| BseSI | GKGCMC | 1 cut(s) | 169 |
| BseXI | GCAGC | 2 cut(s) | 184, 348 |
| BseYI | CCCAGC | 1 cut(s) | 66 |
| BshFI | GGCC | 4 cut(s) | 81, 155, 167, 427 |
| BshNI | GGYRCC | 1 cut(s) | 50 |
| BsiHKAI | GWGCWC | 3 cut(s) | 8, 375, 392 |
| BsiSI | CCGG | 6 cut(s) | 78, 103, 152, 210, 364, 376 |
| BslFI | GGGAC | 2 cut(s) | 103, 248 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 88, 162, 174, 375 |
| BsmAI | GTCTC | 3 cut(s) | 67, 193, 299 |
| BsmBI | CGTCTC | 2 cut(s) | 67, 193 |
| BsmFI | GGGAC | 2 cut(s) | 103, 248 |
| BsmI | GAATGC | 1 cut(s) | 39 |
| BsnI | GGCC | 4 cut(s) | 81, 155, 167, 427 |
| Bso31I | GGTCTC | 1 cut(s) | 299 |
| Bsp120I | GGGCCC | 1 cut(s) | 165 |
| Bsp1286I | GDGCHC | 5 cut(s) | 8, 77, 169, 375, 392 |
| Bsp13I | TCCGGA | 1 cut(s) | 375 |
| Bsp143I | GATC | 1 cut(s) | 283 |
| Bsp19I | CCATGG | 1 cut(s) | 195 |
| BspACI | CCGC | 3 cut(s) | 175, 192, 213 |
| BspANI | GGCC | 4 cut(s) | 81, 155, 167, 427 |
| BspCNI | CTCAG | 1 cut(s) | 292 |
| BspEI | TCCGGA | 1 cut(s) | 375 |
| BspLI | GGNNCC | 7 cut(s) | 52, 76, 93, 167, 217, 254, 322 |
| BspMAI | CTGCAG | 1 cut(s) | 174 |
| BspPI | GGATC | 1 cut(s) | 291 |
| BspT107I | GGYRCC | 1 cut(s) | 50 |
| BspTNI | GGTCTC | 1 cut(s) | 299 |
| BsrFI | RCCGGY | 1 cut(s) | 209 |
| BsrI | ACTGG | 1 cut(s) | 242 |
| BssAI | RCCGGY | 1 cut(s) | 209 |
| BssECI | CCNNGG | 4 cut(s) | 46, 150, 162, 195 |
| BssMI | GATC | 1 cut(s) | 283 |
| BssNI | GRCGYC | 1 cut(s) | 51 |
| BssSI | CACGAG | 1 cut(s) | 383 |
| BssT1I | CCWWGG | 1 cut(s) | 195 |
| Bst2BI | CACGAG | 1 cut(s) | 383 |
| Bst2UI | CCWGG | 3 cut(s) | 47, 89, 163 |
| Bst6I | CTCTTC | 2 cut(s) | 23, 414 |
| BstACI | GRCGYC | 1 cut(s) | 51 |
| BstC8I | GCNNGC | 2 cut(s) | 211, 341 |
| BstDEI | CTNAG | 1 cut(s) | 279 |
| BstDSI | CCRYGG | 1 cut(s) | 195 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 86 |
| BstH2I | RGCGCY | 1 cut(s) | 54 |
| BstHHI | GCGC | 1 cut(s) | 53 |
| BstKTI | GATC | 1 cut(s) | 286 |
| BstMAI | GTCTC | 3 cut(s) | 67, 193, 299 |
| BstMBI | GATC | 1 cut(s) | 283 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 379 |
| BstNI | CCWGG | 3 cut(s) | 47, 89, 163 |
| BstNSI | RCATGY | 1 cut(s) | 350 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 251 |
| BstSCI | CCNGG | 4 cut(s) | 45, 87, 150, 161 |
| BstSFI | CTRYAG | 1 cut(s) | 170 |
| BstSLI | GKGCMC | 1 cut(s) | 169 |
| BstV1I | GCAGC | 2 cut(s) | 184, 348 |
| BstV2I | GAAGAC | 1 cut(s) | 343 |
| BstX2I | RGATCY | 1 cut(s) | 283 |
| BstYI | RGATCY | 1 cut(s) | 283 |
| BsuRI | GGCC | 4 cut(s) | 81, 155, 167, 427 |
| BtgI | CCRYGG | 1 cut(s) | 195 |
| Cac8I | GCNNGC | 2 cut(s) | 211, 341 |
| CaiI | CAGNNNCTG | 1 cut(s) | 286 |
| CfoI | GCGC | 1 cut(s) | 53 |
| Cfr10I | RCCGGY | 1 cut(s) | 209 |
| Cfr13I | GGNCC | 7 cut(s) | 165, 166, 177, 216, 253, 366, 426 |
| CpoI | CGGWCCG | 1 cut(s) | 366 |
| Csp6I | GTAC | 1 cut(s) | 205 |
| CspI | CGGWCCG | 1 cut(s) | 366 |
| CviAII | CATG | 2 cut(s) | 196, 347 |
| CviQI | GTAC | 1 cut(s) | 205 |
| DdeI | CTNAG | 1 cut(s) | 279 |
| DinI | GGCGCC | 1 cut(s) | 52 |
| DpnI | GATC | 1 cut(s) | 285 |
| DpnII | GATC | 1 cut(s) | 283 |
| EaeI | YGGCCR | 1 cut(s) | 153 |
| Eam1104I | CTCTTC | 2 cut(s) | 23, 414 |
| EarI | CTCTTC | 2 cut(s) | 23, 414 |
| EciI | GGCGGA | 1 cut(s) | 181 |
| Ecl136II | GAGCTC | 3 cut(s) | 6, 373, 390 |
| Eco130I | CCWWGG | 1 cut(s) | 195 |
| Eco24I | GRGCYC | 5 cut(s) | 8, 77, 169, 375, 392 |
| Eco31I | GGTCTC | 1 cut(s) | 299 |
| Eco47I | GGWCC | 4 cut(s) | 177, 216, 253, 366 |
| Eco53kI | GAGCTC | 3 cut(s) | 6, 373, 390 |
| EcoICRI | GAGCTC | 3 cut(s) | 6, 373, 390 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 86 |
| EcoO109I | RGGNCCY | 3 cut(s) | 166, 253, 426 |
| EcoRII | CCWGG | 3 cut(s) | 45, 87, 161 |
| EcoT14I | CCWWGG | 1 cut(s) | 195 |
| EcoT38I | GRGCYC | 5 cut(s) | 8, 77, 169, 375, 392 |
| EgeI | GGCGCC | 1 cut(s) | 52 |
| EheI | GGCGCC | 1 cut(s) | 52 |
| ErhI | CCWWGG | 1 cut(s) | 195 |
| Esp3I | CGTCTC | 2 cut(s) | 67, 193 |
| FaeI | CATG | 2 cut(s) | 199, 350 |
| FaiI | YATR | 2 cut(s) | 197, 348 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 257, 289 |
| FaqI | GGGAC | 2 cut(s) | 103, 248 |
| FatI | CATG | 2 cut(s) | 195, 346 |
| FauI | CCCGC | 1 cut(s) | 206 |
| Fnu4HI | GCNGC | 2 cut(s) | 173, 337 |
| FriOI | GRGCYC | 5 cut(s) | 8, 77, 169, 375, 392 |
| Fsp4HI | GCNGC | 2 cut(s) | 173, 337 |
| GlaI | GCGC | 1 cut(s) | 52 |
| GluI | GCNGC | 2 cut(s) | 173, 337 |
| GsaI | CCCAGC | 1 cut(s) | 70 |
| GsuI | CTGGAG | 4 cut(s) | 8, 119, 244, 308 |
| HaeII | RGCGCY | 1 cut(s) | 54 |
| HaeIII | GGCC | 4 cut(s) | 81, 155, 167, 427 |
| HapII | CCGG | 6 cut(s) | 78, 103, 152, 210, 364, 376 |
| HhaI | GCGC | 1 cut(s) | 53 |
| Hin1I | GRCGYC | 1 cut(s) | 51 |
| Hin1II | CATG | 2 cut(s) | 199, 350 |
| Hin6I | GCGC | 1 cut(s) | 51 |
| HinP1I | GCGC | 1 cut(s) | 51 |
| HinfI | GANTC | 1 cut(s) | 313 |
| HpaII | CCGG | 6 cut(s) | 78, 103, 152, 210, 364, 376 |
| HphI | GGTGA | 1 cut(s) | 394 |
| Hpy188I | TCNGA | 4 cut(s) | 18, 325, 370, 394 |
| Hpy188III | TCNNGA | 6 cut(s) | 25, 261, 281, 287, 376, 385 |
| HpyAV | CCTTC | 1 cut(s) | 102 |
| HpyCH4IV | ACGT | 1 cut(s) | 399 |
| HpyCH4V | TGCA | 1 cut(s) | 172 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 379 |
| HpyF3I | CTNAG | 1 cut(s) | 279 |
| HpySE526I | ACGT | 1 cut(s) | 399 |
| Hsp92I | GRCGYC | 1 cut(s) | 51 |
| Hsp92II | CATG | 2 cut(s) | 199, 350 |
| HspAI | GCGC | 1 cut(s) | 51 |
| KasI | GGCGCC | 1 cut(s) | 50 |
| Kpn2I | TCCGGA | 1 cut(s) | 375 |
| KroI | GCCGGC | 1 cut(s) | 209 |
| KroNI | GCCGGC | 1 cut(s) | 211 |
| Kzo9I | GATC | 1 cut(s) | 283 |
| LmnI | GCTCC | 7 cut(s) | 11, 80, 97, 138, 326, 378, 395 |
| Lsp1109I | GCAGC | 2 cut(s) | 184, 348 |
| MaeII | ACGT | 1 cut(s) | 399 |
| MaeIII | GTNAC | 1 cut(s) | 400 |
| MalI | GATC | 1 cut(s) | 285 |
| MboI | GATC | 1 cut(s) | 283 |
| MboII | GAAGA | 4 cut(s) | 40, 343, 346, 401 |
| MflI | RGATCY | 1 cut(s) | 283 |
| MhlI | GDGCHC | 5 cut(s) | 8, 77, 169, 375, 392 |
| Mly113I | GGCGCC | 1 cut(s) | 51 |
| MmeI | TCCRAC | 2 cut(s) | 348, 417 |
| MreI | CGCCGGCG | 1 cut(s) | 209 |
| MroI | TCCGGA | 1 cut(s) | 375 |
| MroNI | GCCGGC | 1 cut(s) | 209 |
| MseI | TTAA | 1 cut(s) | 222 |
| MspA1I | CMGCKG | 2 cut(s) | 175, 339 |
| MspI | CCGG | 6 cut(s) | 78, 103, 152, 210, 364, 376 |
| MspR9I | CCNGG | 4 cut(s) | 47, 89, 152, 163 |
| Mva1269I | GAATGC | 1 cut(s) | 39 |
| MvaI | CCWGG | 3 cut(s) | 47, 89, 163 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 379 |
| NaeI | GCCGGC | 1 cut(s) | 211 |
| NarI | GGCGCC | 1 cut(s) | 51 |
| NciI | CCSGG | 1 cut(s) | 152 |
| NcoI | CCATGG | 1 cut(s) | 195 |
| NdeII | GATC | 1 cut(s) | 283 |
| NgoMIV | GCCGGC | 1 cut(s) | 209 |
| NlaIII | CATG | 2 cut(s) | 199, 350 |
| NlaIV | GGNNCC | 7 cut(s) | 52, 76, 93, 167, 217, 254, 322 |
| NmeAIII | GCCGAG | 1 cut(s) | 297 |
| NmuCI | GTSAC | 1 cut(s) | 400 |
| NspI | RCATGY | 1 cut(s) | 350 |
| PciI | ACATGT | 1 cut(s) | 346 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 390 |
| PctI | GAATGC | 1 cut(s) | 39 |
| PdiI | GCCGGC | 1 cut(s) | 211 |
| PfeI | GAWTC | 1 cut(s) | 313 |
| PflFI | GACNNNGTC | 1 cut(s) | 398 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 162 |
| PkrI | GCNGC | 2 cut(s) | 174, 338 |
| PluTI | GGCGCC | 1 cut(s) | 54 |
| PpuMI | RGGWCCY | 1 cut(s) | 253 |
| PscI | ACATGT | 1 cut(s) | 346 |
| PshAI | GACNNNNGTC | 1 cut(s) | 251 |
| Psp124BI | GAGCTC | 3 cut(s) | 8, 375, 392 |
| Psp5II | RGGWCCY | 1 cut(s) | 253 |
| Psp6I | CCWGG | 3 cut(s) | 45, 87, 161 |
| PspFI | CCCAGC | 1 cut(s) | 66 |
| PspGI | CCWGG | 3 cut(s) | 45, 87, 161 |
| PspN4I | GGNNCC | 7 cut(s) | 52, 76, 93, 167, 217, 254, 322 |
| PspOMI | GGGCCC | 1 cut(s) | 165 |
| PspPI | GGNCC | 7 cut(s) | 165, 166, 177, 216, 253, 366, 426 |
| PspPPI | RGGWCCY | 1 cut(s) | 253 |
| PstI | CTGCAG | 1 cut(s) | 174 |
| PstNI | CAGNNNCTG | 1 cut(s) | 286 |
| PsuI | RGATCY | 1 cut(s) | 283 |
| PsyI | GACNNNGTC | 1 cut(s) | 398 |
| PvuII | CAGCTG | 1 cut(s) | 339 |
| RsaI | GTAC | 1 cut(s) | 206 |
| RsaNI | GTAC | 1 cut(s) | 205 |
| Rsr2I | CGGWCCG | 1 cut(s) | 366 |
| RsrII | CGGWCCG | 1 cut(s) | 366 |
| SacI | GAGCTC | 3 cut(s) | 8, 375, 392 |
| SaqAI | TTAA | 1 cut(s) | 222 |
| SatI | GCNGC | 2 cut(s) | 173, 337 |
| Sau3AI | GATC | 1 cut(s) | 283 |
| Sau96I | GGNCC | 7 cut(s) | 165, 166, 177, 216, 253, 366, 426 |
| ScrFI | CCNGG | 4 cut(s) | 47, 89, 152, 163 |
| SduI | GDGCHC | 5 cut(s) | 8, 77, 169, 375, 392 |
| SetI | ASST | 8 cut(s) | 8, 135, 164, 341, 375, 384, 392, 402 |
| SfcI | CTRYAG | 1 cut(s) | 170 |
| SfoI | GGCGCC | 1 cut(s) | 52 |
| SgrAI | CRCCGGYG | 1 cut(s) | 209 |
| SinI | GGWCC | 4 cut(s) | 177, 216, 253, 366 |
| SmlI | CTYRAG | 1 cut(s) | 128 |
| SmoI | CTYRAG | 1 cut(s) | 128 |
| SsiI | CCGC | 3 cut(s) | 175, 192, 213 |
| SspDI | GGCGCC | 1 cut(s) | 50 |
| SstI | GAGCTC | 3 cut(s) | 8, 375, 392 |
| StyD4I | CCNGG | 4 cut(s) | 45, 87, 150, 161 |
| StyI | CCWWGG | 1 cut(s) | 195 |
| TaiI | ACGT | 1 cut(s) | 402 |
| TaqI | TCGA | 1 cut(s) | 84 |
| TfiI | GAWTC | 1 cut(s) | 313 |
| Tru1I | TTAA | 1 cut(s) | 222 |
| Tru9I | TTAA | 1 cut(s) | 222 |
| TseFI | GTSAC | 1 cut(s) | 400 |
| TseI | GCWGC | 2 cut(s) | 172, 336 |
| Tsp45I | GTSAC | 1 cut(s) | 400 |
| TspDTI | ATGAA | 1 cut(s) | 308 |
| TspGWI | ACGGA | 1 cut(s) | 175 |
| Tth111I | GACNNNGTC | 1 cut(s) | 398 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 162 |
| VpaK11BI | GGWCC | 4 cut(s) | 177, 216, 253, 366 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 86 |
| XceI | RCATGY | 1 cut(s) | 350 |