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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 476, 929 |
| AccB1I | GGYRCC | 2 cut(s) | 139, 268 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 806 |
| AciI | CCGC | 1 cut(s) | 136 |
| AclWI | GGATC | 1 cut(s) | 69 |
| AcsI | RAATTY | 3 cut(s) | 478, 1097, 1103 |
| AcuI | CTGAAG | 3 cut(s) | 273, 663, 871 |
| AdeI | CACNNNGTG | 1 cut(s) | 773 |
| AfaI | GTAC | 1 cut(s) | 46 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 286, 710, 806 |
| AflII | CTTAAG | 1 cut(s) | 191 |
| AjnI | CCWGG | 1 cut(s) | 197 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 525, 557, 789, 821 |
| AleI | CACNNNNGTG | 1 cut(s) | 15 |
| AluBI | AGCT | 5 cut(s) | 34, 257, 467, 614, 1128 |
| AluI | AGCT | 5 cut(s) | 34, 257, 467, 614, 1128 |
| Alw21I | GWGCWC | 2 cut(s) | 216, 1081 |
| Alw44I | GTGCAC | 1 cut(s) | 212 |
| AlwI | GGATC | 1 cut(s) | 69 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 251, 311, 860, 1131 |
| AoxI | GGCC | 3 cut(s) | 461, 593, 809 |
| ApaLI | GTGCAC | 1 cut(s) | 212 |
| ApeKI | GCWGC | 3 cut(s) | 34, 686, 860 |
| ApoI | RAATTY | 3 cut(s) | 478, 1097, 1103 |
| AspS9I | GGNCC | 3 cut(s) | 461, 562, 809 |
| AsuHPI | GGTGA | 1 cut(s) | 326 |
| AsuII | TTCGAA | 1 cut(s) | 395 |
| AvaII | GGWCC | 1 cut(s) | 562 |
| BaeGI | GKGCMC | 1 cut(s) | 216 |
| BanI | GGYRCC | 2 cut(s) | 139, 268 |
| Bbv12I | GWGCWC | 2 cut(s) | 216, 1081 |
| BbvI | GCAGC | 3 cut(s) | 21, 673, 847 |
| BccI | CCATC | 1 cut(s) | 35 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 557, 591, 929, 963 |
| BciT130I | CCWGG | 1 cut(s) | 199 |
| BfaI | CTAG | 3 cut(s) | 38, 813, 1085 |
| BfmI | CTRYAG | 3 cut(s) | 687, 861, 957 |
| BfrI | CTTAAG | 1 cut(s) | 191 |
| BisI | GCNGC | 3 cut(s) | 35, 687, 861 |
| BlsI | GCNGC | 3 cut(s) | 36, 688, 862 |
| Bme1390I | CCNGG | 1 cut(s) | 199 |
| Bme18I | GGWCC | 1 cut(s) | 562 |
| BmgT120I | GGNCC | 3 cut(s) | 461, 562, 809 |
| BmiI | GGNNCC | 2 cut(s) | 141, 270 |
| BmrFI | CCNGG | 1 cut(s) | 199 |
| BmsI | GCATC | 4 cut(s) | 145, 151, 644, 668 |
| BpmI | CTGGAG | 1 cut(s) | 594 |
| Bpu10I | CCTNAGC | 1 cut(s) | 597 |
| Bpu14I | TTCGAA | 1 cut(s) | 395 |
| BpuEI | CTTGAG | 1 cut(s) | 941 |
| BsaJI | CCNNGG | 2 cut(s) | 13, 107 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 286, 710, 806 |
| Bse1I | ACTGG | 2 cut(s) | 226, 316 |
| Bse3DI | GCAATG | 2 cut(s) | 127, 844 |
| BseBI | CCWGG | 1 cut(s) | 199 |
| BseDI | CCNNGG | 2 cut(s) | 13, 107 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 286, 710, 806 |
| BseMI | GCAATG | 2 cut(s) | 127, 844 |
| BseMII | CTCAG | 3 cut(s) | 374, 696, 1017 |
| BseNI | ACTGG | 2 cut(s) | 226, 316 |
| BseRI | GAGGAG | 1 cut(s) | 247 |
| BseSI | GKGCMC | 1 cut(s) | 216 |
| BseXI | GCAGC | 3 cut(s) | 21, 673, 847 |
| BseYI | CCCAGC | 1 cut(s) | 1124 |
| BsgI | GTGCAG | 1 cut(s) | 539 |
| BshFI | GGCC | 3 cut(s) | 463, 595, 811 |
| BshNI | GGYRCC | 2 cut(s) | 139, 268 |
| BsiHKAI | GWGCWC | 2 cut(s) | 216, 1081 |
| BslFI | GGGAC | 1 cut(s) | 370 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 286, 710, 806 |
| BsmFI | GGGAC | 1 cut(s) | 370 |
| BsnI | GGCC | 3 cut(s) | 463, 595, 811 |
| Bsp119I | TTCGAA | 1 cut(s) | 395 |
| Bsp1286I | GDGCHC | 2 cut(s) | 216, 1081 |
| Bsp143I | GATC | 1 cut(s) | 61 |
| Bsp19I | CCATGG | 1 cut(s) | 13 |
| BspACI | CCGC | 1 cut(s) | 136 |
| BspANI | GGCC | 3 cut(s) | 463, 595, 811 |
| BspCNI | CTCAG | 3 cut(s) | 373, 697, 1016 |
| BspLI | GGNNCC | 2 cut(s) | 141, 270 |
| BspMAI | CTGCAG | 2 cut(s) | 691, 865 |
| BspPI | GGATC | 1 cut(s) | 69 |
| BspT104I | TTCGAA | 1 cut(s) | 395 |
| BspT107I | GGYRCC | 2 cut(s) | 139, 268 |
| BspTI | CTTAAG | 1 cut(s) | 191 |
| BsrDI | GCAATG | 2 cut(s) | 127, 844 |
| BsrI | ACTGG | 2 cut(s) | 226, 316 |
| BssECI | CCNNGG | 2 cut(s) | 13, 107 |
| BssMI | GATC | 1 cut(s) | 61 |
| BssT1I | CCWWGG | 2 cut(s) | 13, 107 |
| Bst2UI | CCWGG | 1 cut(s) | 199 |
| Bst4CI | ACNGT | 2 cut(s) | 307, 1018 |
| Bst6I | CTCTTC | 4 cut(s) | 312, 639, 663, 720 |
| BstAFI | CTTAAG | 1 cut(s) | 191 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 860 |
| BstBI | TTCGAA | 1 cut(s) | 395 |
| BstC8I | GCNNGC | 3 cut(s) | 465, 835, 1044 |
| BstDEI | CTNAG | 6 cut(s) | 65, 360, 551, 597, 705, 1003 |
| BstDSI | CCRYGG | 1 cut(s) | 13 |
| BstKTI | GATC | 1 cut(s) | 64 |
| BstMBI | GATC | 1 cut(s) | 61 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 133, 632, 647, 656, 843, 860 |
| BstNI | CCWGG | 1 cut(s) | 199 |
| BstNSI | RCATGY | 1 cut(s) | 944 |
| BstSCI | CCNGG | 1 cut(s) | 197 |
| BstSFI | CTRYAG | 3 cut(s) | 687, 861, 957 |
| BstSLI | GKGCMC | 1 cut(s) | 216 |
| BstV1I | GCAGC | 3 cut(s) | 21, 673, 847 |
| BstX2I | RGATCY | 1 cut(s) | 61 |
| BstYI | RGATCY | 1 cut(s) | 61 |
| BsuRI | GGCC | 3 cut(s) | 463, 595, 811 |
| BtgI | CCRYGG | 1 cut(s) | 13 |
| BtsI | GCAGTG | 1 cut(s) | 1014 |
| BtsIMutI | CAGTG | 3 cut(s) | 214, 312, 1014 |
| Cac8I | GCNNGC | 3 cut(s) | 465, 835, 1044 |
| CaiI | CAGNNNCTG | 4 cut(s) | 251, 311, 860, 1131 |
| Cfr13I | GGNCC | 3 cut(s) | 461, 562, 809 |
| Csp6I | GTAC | 1 cut(s) | 45 |
| CviAII | CATG | 7 cut(s) | 14, 338, 434, 452, 941, 983, 1074 |
| CviQI | GTAC | 1 cut(s) | 45 |
| DdeI | CTNAG | 6 cut(s) | 65, 360, 551, 597, 705, 1003 |
| DpnI | GATC | 1 cut(s) | 63 |
| DpnII | GATC | 1 cut(s) | 61 |
| DraIII | CACNNNGTG | 1 cut(s) | 773 |
| Eam1104I | CTCTTC | 4 cut(s) | 312, 639, 663, 720 |
| EarI | CTCTTC | 4 cut(s) | 312, 639, 663, 720 |
| Eco130I | CCWWGG | 2 cut(s) | 13, 107 |
| Eco147I | AGGCCT | 1 cut(s) | 595 |
| Eco47I | GGWCC | 1 cut(s) | 562 |
| Eco57I | CTGAAG | 3 cut(s) | 273, 663, 871 |
| EcoRI | GAATTC | 1 cut(s) | 1097 |
| EcoRII | CCWGG | 1 cut(s) | 197 |
| EcoT14I | CCWWGG | 2 cut(s) | 13, 107 |
| EcoT22I | ATGCAT | 1 cut(s) | 166 |
| ErhI | CCWWGG | 2 cut(s) | 13, 107 |
| FaeI | CATG | 7 cut(s) | 17, 341, 437, 455, 944, 986, 1077 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 100, 132 |
| FaqI | GGGAC | 1 cut(s) | 370 |
| FatI | CATG | 7 cut(s) | 13, 337, 433, 451, 940, 982, 1073 |
| FauI | CCCGC | 1 cut(s) | 129 |
| Fnu4HI | GCNGC | 3 cut(s) | 35, 687, 861 |
| Fsp4HI | GCNGC | 3 cut(s) | 35, 687, 861 |
| FspBI | CTAG | 3 cut(s) | 38, 813, 1085 |
| GluI | GCNGC | 3 cut(s) | 35, 687, 861 |
| GsaI | CCCAGC | 1 cut(s) | 1128 |
| GsuI | CTGGAG | 1 cut(s) | 594 |
| HaeIII | GGCC | 3 cut(s) | 463, 595, 811 |
| Hin1II | CATG | 7 cut(s) | 17, 341, 437, 455, 944, 986, 1077 |
| HincII | GTYRAC | 1 cut(s) | 787 |
| HindII | GTYRAC | 1 cut(s) | 787 |
| HinfI | GANTC | 5 cut(s) | 103, 184, 292, 358, 485 |
| HphI | GGTGA | 1 cut(s) | 326 |
| Hpy166II | GTNNAC | 2 cut(s) | 214, 787 |
| Hpy188I | TCNGA | 2 cut(s) | 490, 1133 |
| Hpy188III | TCNNGA | 3 cut(s) | 100, 620, 920 |
| Hpy8I | GTNNAC | 2 cut(s) | 214, 787 |
| HpyAV | CCTTC | 5 cut(s) | 231, 391, 452, 527, 649 |
| HpyCH4III | ACNGT | 2 cut(s) | 307, 1018 |
| HpyCH4V | TGCA | 9 cut(s) | 120, 158, 164, 214, 431, 520, 689, 863, 1042 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 133, 632, 647, 656, 843, 860 |
| HpyF3I | CTNAG | 6 cut(s) | 65, 360, 551, 597, 705, 1003 |
| Hsp92II | CATG | 7 cut(s) | 17, 341, 437, 455, 944, 986, 1077 |
| Kzo9I | GATC | 1 cut(s) | 61 |
| LmnI | GCTCC | 3 cut(s) | 334, 613, 851 |
| Lsp1109I | GCAGC | 3 cut(s) | 21, 673, 847 |
| LweI | GCATC | 4 cut(s) | 145, 151, 644, 668 |
| MaeI | CTAG | 3 cut(s) | 38, 813, 1085 |
| MaeIII | GTNAC | 4 cut(s) | 20, 307, 554, 1062 |
| MalI | GATC | 1 cut(s) | 63 |
| MboI | GATC | 1 cut(s) | 61 |
| MboII | GAAGA | 6 cut(s) | 329, 467, 656, 680, 737, 838 |
| MfeI | CAATTG | 1 cut(s) | 801 |
| MflI | RGATCY | 1 cut(s) | 61 |
| MhlI | GDGCHC | 2 cut(s) | 216, 1081 |
| MluCI | AATT | 6 cut(s) | 179, 478, 801, 874, 1097, 1103 |
| MlyI | GAGTC | 1 cut(s) | 352 |
| MmeI | TCCRAC | 1 cut(s) | 974 |
| Mph1103I | ATGCAT | 1 cut(s) | 166 |
| MseI | TTAA | 5 cut(s) | 177, 192, 365, 426, 1119 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 939 |
| MspA1I | CMGCKG | 2 cut(s) | 467, 614 |
| MspCI | CTTAAG | 1 cut(s) | 191 |
| MspR9I | CCNGG | 1 cut(s) | 199 |
| MunI | CAATTG | 1 cut(s) | 801 |
| MvaI | CCWGG | 1 cut(s) | 199 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 133, 632, 647, 656, 843, 860 |
| NcoI | CCATGG | 1 cut(s) | 13 |
| NdeII | GATC | 1 cut(s) | 61 |
| NlaIII | CATG | 7 cut(s) | 17, 341, 437, 455, 944, 986, 1077 |
| NlaIV | GGNNCC | 2 cut(s) | 141, 270 |
| NmuCI | GTSAC | 2 cut(s) | 307, 554 |
| NsiI | ATGCAT | 1 cut(s) | 166 |
| NspI | RCATGY | 1 cut(s) | 944 |
| NspV | TTCGAA | 1 cut(s) | 395 |
| OliI | CACNNNNGTG | 1 cut(s) | 15 |
| PceI | AGGCCT | 1 cut(s) | 595 |
| PfeI | GAWTC | 4 cut(s) | 103, 184, 292, 485 |
| PflFI | GACNNNGTC | 1 cut(s) | 560 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 806 |
| PkrI | GCNGC | 3 cut(s) | 36, 688, 862 |
| PleI | GAGTC | 1 cut(s) | 352 |
| PpsI | GAGTC | 1 cut(s) | 352 |
| PsiI | TTATAA | 2 cut(s) | 476, 929 |
| Psp6I | CCWGG | 1 cut(s) | 197 |
| PspFI | CCCAGC | 1 cut(s) | 1124 |
| PspGI | CCWGG | 1 cut(s) | 197 |
| PspN4I | GGNNCC | 2 cut(s) | 141, 270 |
| PspPI | GGNCC | 3 cut(s) | 461, 562, 809 |
| PstI | CTGCAG | 2 cut(s) | 691, 865 |
| PstNI | CAGNNNCTG | 4 cut(s) | 251, 311, 860, 1131 |
| PsuI | RGATCY | 1 cut(s) | 61 |
| PsyI | GACNNNGTC | 1 cut(s) | 560 |
| PvuII | CAGCTG | 2 cut(s) | 467, 614 |
| RsaI | GTAC | 1 cut(s) | 46 |
| RsaNI | GTAC | 1 cut(s) | 45 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 939 |
| SaqAI | TTAA | 5 cut(s) | 177, 192, 365, 426, 1119 |
| SatI | GCNGC | 3 cut(s) | 35, 687, 861 |
| Sau3AI | GATC | 1 cut(s) | 61 |
| Sau96I | GGNCC | 3 cut(s) | 461, 562, 809 |
| SchI | GAGTC | 1 cut(s) | 352 |
| ScrFI | CCNGG | 1 cut(s) | 199 |
| SduI | GDGCHC | 2 cut(s) | 216, 1081 |
| SfaNI | GCATC | 4 cut(s) | 145, 151, 644, 668 |
| SfcI | CTRYAG | 3 cut(s) | 687, 861, 957 |
| SfuI | TTCGAA | 1 cut(s) | 395 |
| SinI | GGWCC | 1 cut(s) | 562 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 939 |
| SmlI | CTYRAG | 2 cut(s) | 191, 920 |
| SmoI | CTYRAG | 2 cut(s) | 191, 920 |
| Sse9I | AATT | 6 cut(s) | 179, 478, 801, 874, 1097, 1103 |
| SseBI | AGGCCT | 1 cut(s) | 595 |
| SsiI | CCGC | 1 cut(s) | 136 |
| SspMI | CTAG | 3 cut(s) | 38, 813, 1085 |
| StuI | AGGCCT | 1 cut(s) | 595 |
| StyD4I | CCNGG | 1 cut(s) | 197 |
| StyI | CCWWGG | 2 cut(s) | 13, 107 |
| TaaI | ACNGT | 2 cut(s) | 307, 1018 |
| TaqI | TCGA | 3 cut(s) | 395, 501, 567 |
| TasI | AATT | 6 cut(s) | 179, 478, 801, 874, 1097, 1103 |
| TfiI | GAWTC | 4 cut(s) | 103, 184, 292, 485 |
| Tru1I | TTAA | 5 cut(s) | 177, 192, 365, 426, 1119 |
| Tru9I | TTAA | 5 cut(s) | 177, 192, 365, 426, 1119 |
| TscAI | CASTG | 3 cut(s) | 214, 312, 1014 |
| TseFI | GTSAC | 2 cut(s) | 307, 554 |
| TseI | GCWGC | 3 cut(s) | 34, 686, 860 |
| Tsp45I | GTSAC | 2 cut(s) | 307, 554 |
| TspDTI | ATGAA | 5 cut(s) | 78, 354, 468, 810, 999 |
| TspRI | CASTG | 3 cut(s) | 214, 312, 1014 |
| Tth111I | GACNNNGTC | 1 cut(s) | 560 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 806 |
| Vha464I | CTTAAG | 1 cut(s) | 191 |
| VneI | GTGCAC | 1 cut(s) | 212 |
| VpaK11BI | GGWCC | 1 cut(s) | 562 |
| XapI | RAATTY | 3 cut(s) | 478, 1097, 1103 |
| XceI | RCATGY | 1 cut(s) | 944 |
| XspI | CTAG | 3 cut(s) | 38, 813, 1085 |
| Zsp2I | ATGCAT | 1 cut(s) | 166 |