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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1042 |
| Acc65I | GGTACC | 1 cut(s) | 463 |
| AccB1I | GGYRCC | 2 cut(s) | 463, 822 |
| AciI | CCGC | 2 cut(s) | 57, 451 |
| AclWI | GGATC | 4 cut(s) | 680, 975, 1140, 1202 |
| AcuI | CTGAAG | 1 cut(s) | 1197 |
| AfaI | GTAC | 1 cut(s) | 465 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 936 |
| AflII | CTTAAG | 1 cut(s) | 773 |
| AflIII | ACRYGT | 1 cut(s) | 521 |
| AgsI | TTSAA | 6 cut(s) | 184, 281, 721, 745, 832, 1102 |
| AjnI | CCWGG | 2 cut(s) | 890, 1114 |
| AleI | CACNNNNGTG | 1 cut(s) | 429 |
| Alw21I | GWGCWC | 2 cut(s) | 106, 772 |
| Alw26I | GTCTC | 1 cut(s) | 651 |
| AlwI | GGATC | 4 cut(s) | 680, 975, 1140, 1202 |
| AoxI | GGCC | 4 cut(s) | 727, 811, 900, 1155 |
| ApeKI | GCWGC | 2 cut(s) | 257, 605 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 931, 963 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1172 |
| Asp718I | GGTACC | 1 cut(s) | 463 |
| AspS9I | GGNCC | 4 cut(s) | 54, 801, 952, 999 |
| AsuHPI | GGTGA | 3 cut(s) | 89, 343, 1135 |
| AvaII | GGWCC | 4 cut(s) | 54, 801, 952, 999 |
| BanI | GGYRCC | 2 cut(s) | 463, 822 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 717, 749 |
| Bbv12I | GWGCWC | 2 cut(s) | 106, 772 |
| BbvI | GCAGC | 2 cut(s) | 244, 617 |
| BccI | CCATC | 5 cut(s) | 68, 143, 155, 161, 772 |
| BciT130I | CCWGG | 2 cut(s) | 892, 1116 |
| BcoDI | GTCTC | 1 cut(s) | 651 |
| BfaI | CTAG | 1 cut(s) | 435 |
| BfmI | CTRYAG | 1 cut(s) | 63 |
| BfrI | CTTAAG | 1 cut(s) | 773 |
| BfuAI | ACCTGC | 1 cut(s) | 1042 |
| BisI | GCNGC | 2 cut(s) | 258, 606 |
| BlpI | GCTNAGC | 1 cut(s) | 489 |
| BlsI | GCNGC | 2 cut(s) | 259, 607 |
| Bme1390I | CCNGG | 2 cut(s) | 892, 1116 |
| Bme18I | GGWCC | 4 cut(s) | 54, 801, 952, 999 |
| BmgT120I | GGNCC | 4 cut(s) | 54, 801, 952, 999 |
| BmiI | GGNNCC | 4 cut(s) | 55, 173, 465, 824 |
| BmrFI | CCNGG | 2 cut(s) | 892, 1116 |
| BmsI | GCATC | 3 cut(s) | 369, 380, 865 |
| Bpu10I | CCTNAGC | 2 cut(s) | 610, 963 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 489 |
| BsaBI | GATNNNNATC | 1 cut(s) | 755 |
| BsaJI | CCNNGG | 2 cut(s) | 891, 1152 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 936 |
| Bse3DI | GCAATG | 1 cut(s) | 99 |
| Bse8I | GATNNNNATC | 1 cut(s) | 755 |
| BseBI | CCWGG | 2 cut(s) | 892, 1116 |
| BseDI | CCNNGG | 2 cut(s) | 891, 1152 |
| BseGI | GGATG | 5 cut(s) | 10, 673, 800, 880, 988 |
| BseJI | GATNNNNATC | 1 cut(s) | 755 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 936 |
| BseMI | GCAATG | 1 cut(s) | 99 |
| BseMII | CTCAG | 4 cut(s) | 168, 468, 480, 1058 |
| BseRI | GAGGAG | 2 cut(s) | 54, 134 |
| BseXI | GCAGC | 2 cut(s) | 244, 617 |
| BsgI | GTGCAG | 1 cut(s) | 405 |
| BshFI | GGCC | 4 cut(s) | 729, 813, 902, 1157 |
| BshNI | GGYRCC | 2 cut(s) | 463, 822 |
| BsiHKAI | GWGCWC | 2 cut(s) | 106, 772 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 936 |
| BsmAI | GTCTC | 1 cut(s) | 651 |
| BsnI | GGCC | 4 cut(s) | 729, 813, 902, 1157 |
| Bsp1286I | GDGCHC | 2 cut(s) | 106, 772 |
| Bsp143I | GATC | 4 cut(s) | 685, 967, 1132, 1207 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 489 |
| BspACI | CCGC | 2 cut(s) | 57, 451 |
| BspANI | GGCC | 4 cut(s) | 729, 813, 902, 1157 |
| BspCNI | CTCAG | 4 cut(s) | 169, 469, 481, 1059 |
| BspHI | TCATGA | 1 cut(s) | 442 |
| BspLI | GGNNCC | 4 cut(s) | 55, 173, 465, 824 |
| BspMAI | CTGCAG | 1 cut(s) | 67 |
| BspMI | ACCTGC | 1 cut(s) | 1042 |
| BspPI | GGATC | 4 cut(s) | 680, 975, 1140, 1202 |
| BspQI | GCTCTTC | 2 cut(s) | 673, 827 |
| BspT107I | GGYRCC | 2 cut(s) | 463, 822 |
| BspTI | CTTAAG | 1 cut(s) | 773 |
| BsrDI | GCAATG | 1 cut(s) | 99 |
| BssECI | CCNNGG | 2 cut(s) | 891, 1152 |
| BssMI | GATC | 4 cut(s) | 685, 967, 1132, 1207 |
| BssT1I | CCWWGG | 1 cut(s) | 1152 |
| Bst2UI | CCWGG | 2 cut(s) | 892, 1116 |
| Bst6I | CTCTTC | 2 cut(s) | 673, 827 |
| BstAFI | CTTAAG | 1 cut(s) | 773 |
| BstC8I | GCNNGC | 1 cut(s) | 585 |
| BstDEI | CTNAG | 7 cut(s) | 177, 477, 489, 610, 674, 963, 1067 |
| BstF5I | GGATG | 5 cut(s) | 10, 673, 800, 880, 988 |
| BstKTI | GATC | 4 cut(s) | 688, 970, 1135, 1210 |
| BstMAI | GTCTC | 1 cut(s) | 651 |
| BstMBI | GATC | 4 cut(s) | 685, 967, 1132, 1207 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 499, 551, 593, 602, 611 |
| BstNI | CCWGG | 2 cut(s) | 892, 1116 |
| BstNSI | RCATGY | 3 cut(s) | 389, 525, 1149 |
| BstSCI | CCNGG | 2 cut(s) | 890, 1114 |
| BstSFI | CTRYAG | 1 cut(s) | 63 |
| BstV1I | GCAGC | 2 cut(s) | 244, 617 |
| BstX2I | RGATCY | 3 cut(s) | 685, 967, 1207 |
| BstYI | RGATCY | 3 cut(s) | 685, 967, 1207 |
| BsuRI | GGCC | 4 cut(s) | 729, 813, 902, 1157 |
| BtsCI | GGATG | 5 cut(s) | 10, 673, 800, 880, 988 |
| BveI | ACCTGC | 1 cut(s) | 1042 |
| Cac8I | GCNNGC | 1 cut(s) | 585 |
| CciI | TCATGA | 1 cut(s) | 442 |
| Cfr13I | GGNCC | 4 cut(s) | 54, 801, 952, 999 |
| Csp6I | GTAC | 1 cut(s) | 464 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 269, 304 |
| CviAII | CATG | 7 cut(s) | 386, 443, 454, 522, 547, 1146, 1218 |
| CviQI | GTAC | 1 cut(s) | 464 |
| DdeI | CTNAG | 7 cut(s) | 177, 477, 489, 610, 674, 963, 1067 |
| DpnI | GATC | 4 cut(s) | 687, 969, 1134, 1209 |
| DpnII | GATC | 4 cut(s) | 685, 967, 1132, 1207 |
| Eam1104I | CTCTTC | 2 cut(s) | 673, 827 |
| EarI | CTCTTC | 2 cut(s) | 673, 827 |
| Eco130I | CCWWGG | 1 cut(s) | 1152 |
| Eco47I | GGWCC | 4 cut(s) | 54, 801, 952, 999 |
| Eco57I | CTGAAG | 1 cut(s) | 1197 |
| EcoRII | CCWGG | 2 cut(s) | 890, 1114 |
| EcoT14I | CCWWGG | 1 cut(s) | 1152 |
| EcoT22I | ATGCAT | 1 cut(s) | 204 |
| ErhI | CCWWGG | 1 cut(s) | 1152 |
| FaeI | CATG | 7 cut(s) | 389, 446, 457, 525, 550, 1149, 1221 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 593, 625, 701, 733 |
| FatI | CATG | 7 cut(s) | 385, 442, 453, 521, 546, 1145, 1217 |
| Fnu4HI | GCNGC | 2 cut(s) | 258, 606 |
| FokI | GGATG | 5 cut(s) | 17, 680, 807, 887, 995 |
| Fsp4HI | GCNGC | 2 cut(s) | 258, 606 |
| FspBI | CTAG | 1 cut(s) | 435 |
| GluI | GCNGC | 2 cut(s) | 258, 606 |
| HaeIII | GGCC | 4 cut(s) | 729, 813, 902, 1157 |
| Hin1II | CATG | 7 cut(s) | 389, 446, 457, 525, 550, 1149, 1221 |
| HincII | GTYRAC | 1 cut(s) | 519 |
| HindII | GTYRAC | 1 cut(s) | 519 |
| HindIII | AAGCTT | 1 cut(s) | 294 |
| HinfI | GANTC | 1 cut(s) | 110 |
| HphI | GGTGA | 3 cut(s) | 89, 343, 1135 |
| Hpy166II | GTNNAC | 2 cut(s) | 519, 1092 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 852, 972 |
| Hpy188III | TCNNGA | 4 cut(s) | 406, 443, 745, 1192 |
| Hpy8I | GTNNAC | 2 cut(s) | 519, 1092 |
| Hpy99I | CGWCG | 1 cut(s) | 379 |
| HpyAV | CCTTC | 7 cut(s) | 556, 719, 980, 1012, 1015, 1123, 1221 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 499, 551, 593, 602, 611 |
| HpyF3I | CTNAG | 7 cut(s) | 177, 477, 489, 610, 674, 963, 1067 |
| Hsp92II | CATG | 7 cut(s) | 389, 446, 457, 525, 550, 1149, 1221 |
| KpnI | GGTACC | 1 cut(s) | 467 |
| Kzo9I | GATC | 4 cut(s) | 685, 967, 1132, 1207 |
| LguI | GCTCTTC | 2 cut(s) | 673, 827 |
| LmnI | GCTCC | 5 cut(s) | 41, 101, 637, 767, 989 |
| Lsp1109I | GCAGC | 2 cut(s) | 244, 617 |
| LweI | GCATC | 3 cut(s) | 369, 380, 865 |
| MaeI | CTAG | 1 cut(s) | 435 |
| MaeIII | GTNAC | 4 cut(s) | 311, 531, 713, 1029 |
| MalI | GATC | 4 cut(s) | 687, 969, 1134, 1209 |
| MboI | GATC | 4 cut(s) | 685, 967, 1132, 1207 |
| MboII | GAAGA | 2 cut(s) | 690, 844 |
| MflI | RGATCY | 3 cut(s) | 685, 967, 1207 |
| MhlI | GDGCHC | 2 cut(s) | 106, 772 |
| MluCI | AATT | 7 cut(s) | 21, 212, 276, 349, 731, 1106, 1202 |
| MlyI | GAGTC | 1 cut(s) | 104 |
| MmeI | TCCRAC | 3 cut(s) | 852, 900, 977 |
| MnlI | CCTC | 8 cut(s) | 32, 112, 130, 219, 741, 824, 839, 1036 |
| Mph1103I | ATGCAT | 1 cut(s) | 204 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1172 |
| MseI | TTAA | 4 cut(s) | 15, 306, 498, 774 |
| MslI | CAYNNNNRTG | 3 cut(s) | 224, 429, 1222 |
| MspA1I | CMGCKG | 3 cut(s) | 554, 863, 936 |
| MspCI | CTTAAG | 1 cut(s) | 773 |
| MspR9I | CCNGG | 2 cut(s) | 892, 1116 |
| MvaI | CCWGG | 2 cut(s) | 892, 1116 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 499, 551, 593, 602, 611 |
| NdeII | GATC | 4 cut(s) | 685, 967, 1132, 1207 |
| NlaIII | CATG | 7 cut(s) | 389, 446, 457, 525, 550, 1149, 1221 |
| NlaIV | GGNNCC | 4 cut(s) | 55, 173, 465, 824 |
| NmuCI | GTSAC | 3 cut(s) | 311, 531, 713 |
| NsiI | ATGCAT | 1 cut(s) | 204 |
| NspI | RCATGY | 3 cut(s) | 389, 525, 1149 |
| OliI | CACNNNNGTG | 1 cut(s) | 429 |
| PagI | TCATGA | 1 cut(s) | 442 |
| PciI | ACATGT | 1 cut(s) | 521 |
| PciSI | GCTCTTC | 2 cut(s) | 673, 827 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1172 |
| PkrI | GCNGC | 2 cut(s) | 259, 607 |
| PleI | GAGTC | 1 cut(s) | 104 |
| PpsI | GAGTC | 1 cut(s) | 104 |
| PscI | ACATGT | 1 cut(s) | 521 |
| Psp6I | CCWGG | 2 cut(s) | 890, 1114 |
| PspGI | CCWGG | 2 cut(s) | 890, 1114 |
| PspN4I | GGNNCC | 4 cut(s) | 55, 173, 465, 824 |
| PspPI | GGNCC | 4 cut(s) | 54, 801, 952, 999 |
| PstI | CTGCAG | 1 cut(s) | 67 |
| PsuI | RGATCY | 3 cut(s) | 685, 967, 1207 |
| PvuII | CAGCTG | 3 cut(s) | 554, 863, 936 |
| RsaI | GTAC | 1 cut(s) | 465 |
| RsaNI | GTAC | 1 cut(s) | 464 |
| RseI | CAYNNNNRTG | 3 cut(s) | 224, 429, 1222 |
| SapI | GCTCTTC | 2 cut(s) | 673, 827 |
| SaqAI | TTAA | 4 cut(s) | 15, 306, 498, 774 |
| SatI | GCNGC | 2 cut(s) | 258, 606 |
| Sau3AI | GATC | 4 cut(s) | 685, 967, 1132, 1207 |
| Sau96I | GGNCC | 4 cut(s) | 54, 801, 952, 999 |
| SchI | GAGTC | 1 cut(s) | 104 |
| ScrFI | CCNGG | 2 cut(s) | 892, 1116 |
| SduI | GDGCHC | 2 cut(s) | 106, 772 |
| SfaNI | GCATC | 3 cut(s) | 369, 380, 865 |
| SfcI | CTRYAG | 1 cut(s) | 63 |
| SinI | GGWCC | 4 cut(s) | 54, 801, 952, 999 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 224, 429, 1222 |
| SmlI | CTYRAG | 1 cut(s) | 773 |
| SmoI | CTYRAG | 1 cut(s) | 773 |
| Sse9I | AATT | 7 cut(s) | 21, 212, 276, 349, 731, 1106, 1202 |
| SsiI | CCGC | 2 cut(s) | 57, 451 |
| SspMI | CTAG | 1 cut(s) | 435 |
| StyD4I | CCNGG | 2 cut(s) | 890, 1114 |
| StyI | CCWWGG | 1 cut(s) | 1152 |
| TaqI | TCGA | 2 cut(s) | 374, 816 |
| TasI | AATT | 7 cut(s) | 21, 212, 276, 349, 731, 1106, 1202 |
| Tru1I | TTAA | 4 cut(s) | 15, 306, 498, 774 |
| Tru9I | TTAA | 4 cut(s) | 15, 306, 498, 774 |
| TseFI | GTSAC | 3 cut(s) | 311, 531, 713 |
| TseI | GCWGC | 2 cut(s) | 257, 605 |
| Tsp45I | GTSAC | 3 cut(s) | 311, 531, 713 |
| Vha464I | CTTAAG | 1 cut(s) | 773 |
| VpaK11BI | GGWCC | 4 cut(s) | 54, 801, 952, 999 |
| XceI | RCATGY | 3 cut(s) | 389, 525, 1149 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1172 |
| XspI | CTAG | 1 cut(s) | 435 |
| Zsp2I | ATGCAT | 1 cut(s) | 204 |