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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 661, 688 |
| AccI | GTMKAC | 1 cut(s) | 649 |
| AclWI | GGATC | 1 cut(s) | 100 |
| AcoI | YGGCCR | 1 cut(s) | 400 |
| AcuI | CTGAAG | 1 cut(s) | 615 |
| AfaI | GTAC | 1 cut(s) | 558 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 36 |
| AflII | CTTAAG | 1 cut(s) | 578 |
| AflIII | ACRYGT | 1 cut(s) | 208 |
| AgsI | TTSAA | 1 cut(s) | 155 |
| AleI | CACNNNNGTG | 1 cut(s) | 165 |
| AluBI | AGCT | 4 cut(s) | 68, 352, 544, 577 |
| AluI | AGCT | 4 cut(s) | 68, 352, 544, 577 |
| Alw26I | GTCTC | 1 cut(s) | 375 |
| AlwI | GGATC | 1 cut(s) | 100 |
| AoxI | GGCC | 1 cut(s) | 400 |
| ApeKI | GCWGC | 4 cut(s) | 68, 132, 218, 605 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 129, 161 |
| AspS9I | GGNCC | 1 cut(s) | 101 |
| AvaII | GGWCC | 1 cut(s) | 101 |
| AxyI | CCTNAGG | 1 cut(s) | 246 |
| BalI | TGGCCA | 1 cut(s) | 402 |
| BbsI | GAAGAC | 2 cut(s) | 284, 644 |
| BbvCI | CCTCAGC | 1 cut(s) | 545 |
| BbvI | GCAGC | 4 cut(s) | 55, 144, 230, 617 |
| BccI | CCATC | 3 cut(s) | 174, 203, 230 |
| BcoDI | GTCTC | 1 cut(s) | 375 |
| BfaI | CTAG | 1 cut(s) | 87 |
| BfrI | CTTAAG | 1 cut(s) | 578 |
| BfuAI | ACCTGC | 2 cut(s) | 661, 688 |
| BglII | AGATCT | 1 cut(s) | 42 |
| BisI | GCNGC | 4 cut(s) | 69, 133, 219, 606 |
| BlsI | GCNGC | 4 cut(s) | 70, 134, 220, 607 |
| Bme18I | GGWCC | 1 cut(s) | 101 |
| BmgT120I | GGNCC | 1 cut(s) | 101 |
| BmiI | GGNNCC | 1 cut(s) | 525 |
| BmsI | GCATC | 1 cut(s) | 629 |
| BpiI | GAAGAC | 2 cut(s) | 284, 644 |
| Bpu10I | CCTNAGC | 1 cut(s) | 545 |
| BpuEI | CTTGAG | 1 cut(s) | 359 |
| BsaAI | YACGTR | 1 cut(s) | 142 |
| BsaI | GGTCTC | 1 cut(s) | 375 |
| BsaJI | CCNNGG | 1 cut(s) | 35 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 36 |
| Bse1I | ACTGG | 1 cut(s) | 459 |
| Bse21I | CCTNAGG | 1 cut(s) | 246 |
| Bse3DI | GCAATG | 1 cut(s) | 262 |
| BseDI | CCNNGG | 1 cut(s) | 35 |
| BseGI | GGATG | 2 cut(s) | 195, 491 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 36 |
| BseMI | GCAATG | 1 cut(s) | 262 |
| BseMII | CTCAG | 3 cut(s) | 237, 315, 536 |
| BseNI | ACTGG | 1 cut(s) | 459 |
| BseXI | GCAGC | 4 cut(s) | 55, 144, 230, 617 |
| BsgI | GTGCAG | 1 cut(s) | 383 |
| BshFI | GGCC | 1 cut(s) | 402 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 36 |
| BsmAI | GTCTC | 1 cut(s) | 375 |
| BsmI | GAATGC | 1 cut(s) | 81 |
| BsnI | GGCC | 1 cut(s) | 402 |
| Bso31I | GGTCTC | 1 cut(s) | 375 |
| Bsp143I | GATC | 3 cut(s) | 42, 92, 259 |
| BspANI | GGCC | 1 cut(s) | 402 |
| BspCNI | CTCAG | 3 cut(s) | 238, 316, 537 |
| BspLI | GGNNCC | 1 cut(s) | 525 |
| BspMI | ACCTGC | 2 cut(s) | 661, 688 |
| BspPI | GGATC | 1 cut(s) | 100 |
| BspTI | CTTAAG | 1 cut(s) | 578 |
| BspTNI | GGTCTC | 1 cut(s) | 375 |
| BsrDI | GCAATG | 1 cut(s) | 262 |
| BsrI | ACTGG | 1 cut(s) | 459 |
| BssECI | CCNNGG | 1 cut(s) | 35 |
| BssMI | GATC | 3 cut(s) | 42, 92, 259 |
| Bst6I | CTCTTC | 1 cut(s) | 464 |
| BstAFI | CTTAAG | 1 cut(s) | 578 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 626 |
| BstBAI | YACGTR | 1 cut(s) | 142 |
| BstC8I | GCNNGC | 2 cut(s) | 172, 240 |
| BstDEI | CTNAG | 7 cut(s) | 46, 246, 324, 501, 513, 545, 563 |
| BstF5I | GGATG | 2 cut(s) | 195, 491 |
| BstKTI | GATC | 3 cut(s) | 45, 95, 262 |
| BstMAI | GTCTC | 1 cut(s) | 375 |
| BstMBI | GATC | 3 cut(s) | 42, 92, 259 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 129, 329, 611, 626 |
| BstNSI | RCATGY | 2 cut(s) | 174, 212 |
| BstV1I | GCAGC | 4 cut(s) | 55, 144, 230, 617 |
| BstV2I | GAAGAC | 2 cut(s) | 284, 644 |
| BstX2I | RGATCY | 2 cut(s) | 42, 92 |
| BstYI | RGATCY | 2 cut(s) | 42, 92 |
| Bsu36I | CCTNAGG | 1 cut(s) | 246 |
| BsuRI | GGCC | 1 cut(s) | 402 |
| BtsCI | GGATG | 2 cut(s) | 195, 491 |
| BveI | ACCTGC | 2 cut(s) | 661, 688 |
| Cac8I | GCNNGC | 2 cut(s) | 172, 240 |
| Cfr13I | GGNCC | 1 cut(s) | 101 |
| Csp6I | GTAC | 1 cut(s) | 557 |
| CviAII | CATG | 6 cut(s) | 171, 201, 209, 232, 286, 392 |
| CviJI | RGCY | 9 cut(s) | 68, 221, 242, 290, 352, 402, 526, 544, 577 |
| CviKI_1 | RGCY | 9 cut(s) | 68, 221, 242, 290, 352, 402, 526, 544, 577 |
| CviQI | GTAC | 1 cut(s) | 557 |
| DdeI | CTNAG | 7 cut(s) | 46, 246, 324, 501, 513, 545, 563 |
| DpnI | GATC | 3 cut(s) | 44, 94, 261 |
| DpnII | GATC | 3 cut(s) | 42, 92, 259 |
| EaeI | YGGCCR | 1 cut(s) | 400 |
| Eam1104I | CTCTTC | 1 cut(s) | 464 |
| EarI | CTCTTC | 1 cut(s) | 464 |
| Eco31I | GGTCTC | 1 cut(s) | 375 |
| Eco47I | GGWCC | 1 cut(s) | 101 |
| Eco57I | CTGAAG | 1 cut(s) | 615 |
| Eco81I | CCTNAGG | 1 cut(s) | 246 |
| FaeI | CATG | 6 cut(s) | 174, 204, 212, 235, 289, 395 |
| FatI | CATG | 6 cut(s) | 170, 200, 208, 231, 285, 391 |
| FblI | GTMKAC | 1 cut(s) | 649 |
| Fnu4HI | GCNGC | 4 cut(s) | 69, 133, 219, 606 |
| FokI | GGATG | 2 cut(s) | 182, 478 |
| Fsp4HI | GCNGC | 4 cut(s) | 69, 133, 219, 606 |
| FspBI | CTAG | 1 cut(s) | 87 |
| GluI | GCNGC | 4 cut(s) | 69, 133, 219, 606 |
| HaeIII | GGCC | 1 cut(s) | 402 |
| Hin1II | CATG | 6 cut(s) | 174, 204, 212, 235, 289, 395 |
| HincII | GTYRAC | 1 cut(s) | 148 |
| HindII | GTYRAC | 1 cut(s) | 148 |
| HindIII | AAGCTT | 2 cut(s) | 350, 575 |
| HinfI | GANTC | 1 cut(s) | 485 |
| Hpy166II | GTNNAC | 4 cut(s) | 101, 148, 206, 650 |
| Hpy188III | TCNNGA | 2 cut(s) | 412, 495 |
| Hpy8I | GTNNAC | 4 cut(s) | 101, 148, 206, 650 |
| HpyAV | CCTTC | 5 cut(s) | 161, 322, 513, 547, 595 |
| HpyCH4IV | ACGT | 1 cut(s) | 141 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 71, 81, 170, 174, 218, 364, 391, 656 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 129, 329, 611, 626 |
| HpyF3I | CTNAG | 7 cut(s) | 46, 246, 324, 501, 513, 545, 563 |
| HpySE526I | ACGT | 1 cut(s) | 141 |
| Hsp92II | CATG | 6 cut(s) | 174, 204, 212, 235, 289, 395 |
| Kzo9I | GATC | 3 cut(s) | 42, 92, 259 |
| LmnI | GCTCC | 2 cut(s) | 523, 688 |
| Lsp1109I | GCAGC | 4 cut(s) | 55, 144, 230, 617 |
| LweI | GCATC | 1 cut(s) | 629 |
| MaeI | CTAG | 1 cut(s) | 87 |
| MaeII | ACGT | 1 cut(s) | 141 |
| MaeIII | GTNAC | 1 cut(s) | 461 |
| MalI | GATC | 3 cut(s) | 44, 94, 261 |
| MboI | GATC | 3 cut(s) | 42, 92, 259 |
| MboII | GAAGA | 6 cut(s) | 26, 64, 289, 481, 562, 649 |
| MflI | RGATCY | 2 cut(s) | 42, 92 |
| MlsI | TGGCCA | 1 cut(s) | 402 |
| MluCI | AATT | 5 cut(s) | 108, 185, 226, 336, 385 |
| MluNI | TGGCCA | 1 cut(s) | 402 |
| MnlI | CCTC | 9 cut(s) | 30, 106, 228, 241, 335, 360, 460, 465, 540 |
| Mox20I | TGGCCA | 1 cut(s) | 402 |
| MscI | TGGCCA | 1 cut(s) | 402 |
| MseI | TTAA | 4 cut(s) | 188, 318, 579, 691 |
| MslI | CAYNNNNRTG | 1 cut(s) | 165 |
| Msp20I | TGGCCA | 1 cut(s) | 402 |
| MspCI | CTTAAG | 1 cut(s) | 578 |
| Mva1269I | GAATGC | 1 cut(s) | 81 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 129, 329, 611, 626 |
| NdeII | GATC | 3 cut(s) | 42, 92, 259 |
| NlaIII | CATG | 6 cut(s) | 174, 204, 212, 235, 289, 395 |
| NlaIV | GGNNCC | 1 cut(s) | 525 |
| NspI | RCATGY | 2 cut(s) | 174, 212 |
| OliI | CACNNNNGTG | 1 cut(s) | 165 |
| PaeI | GCATGC | 1 cut(s) | 174 |
| PciI | ACATGT | 1 cut(s) | 208 |
| PctI | GAATGC | 1 cut(s) | 81 |
| PfeI | GAWTC | 1 cut(s) | 485 |
| PkrI | GCNGC | 4 cut(s) | 70, 134, 220, 607 |
| Ppu21I | YACGTR | 1 cut(s) | 142 |
| PscI | ACATGT | 1 cut(s) | 208 |
| PspN4I | GGNNCC | 1 cut(s) | 525 |
| PspPI | GGNCC | 1 cut(s) | 101 |
| PsuI | RGATCY | 2 cut(s) | 42, 92 |
| RsaI | GTAC | 1 cut(s) | 558 |
| RsaNI | GTAC | 1 cut(s) | 557 |
| RseI | CAYNNNNRTG | 1 cut(s) | 165 |
| SaqAI | TTAA | 4 cut(s) | 188, 318, 579, 691 |
| SatI | GCNGC | 4 cut(s) | 69, 133, 219, 606 |
| Sau3AI | GATC | 3 cut(s) | 42, 92, 259 |
| Sau96I | GGNCC | 1 cut(s) | 101 |
| SfaNI | GCATC | 1 cut(s) | 629 |
| SinI | GGWCC | 1 cut(s) | 101 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 165 |
| SmlI | CTYRAG | 2 cut(s) | 374, 578 |
| SmoI | CTYRAG | 2 cut(s) | 374, 578 |
| SphI | GCATGC | 1 cut(s) | 174 |
| Sse9I | AATT | 5 cut(s) | 108, 185, 226, 336, 385 |
| SspMI | CTAG | 1 cut(s) | 87 |
| TaiI | ACGT | 1 cut(s) | 144 |
| TasI | AATT | 5 cut(s) | 108, 185, 226, 336, 385 |
| TfiI | GAWTC | 1 cut(s) | 485 |
| Tru1I | TTAA | 4 cut(s) | 188, 318, 579, 691 |
| Tru9I | TTAA | 4 cut(s) | 188, 318, 579, 691 |
| TseI | GCWGC | 4 cut(s) | 68, 132, 218, 605 |
| TspDTI | ATGAA | 3 cut(s) | 408, 498, 609 |
| Vha464I | CTTAAG | 1 cut(s) | 578 |
| VpaK11BI | GGWCC | 1 cut(s) | 101 |
| XceI | RCATGY | 2 cut(s) | 174, 212 |
| XmiI | GTMKAC | 1 cut(s) | 649 |
| XspI | CTAG | 1 cut(s) | 87 |