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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 330, 1827 |
| Acc36I | ACCTGC | 1 cut(s) | 1388 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 713 |
| AccI | GTMKAC | 4 cut(s) | 357, 435, 1136, 1219 |
| AciI | CCGC | 1 cut(s) | 2595 |
| AclWI | GGATC | 8 cut(s) | 152, 1283, 1994, 2036, 2119, 2132, 2265, 2605 |
| AcoI | YGGCCR | 2 cut(s) | 1333, 2217 |
| AcsI | RAATTY | 1 cut(s) | 1702 |
| AcuI | CTGAAG | 4 cut(s) | 162, 1400, 1457, 2334 |
| AfaI | GTAC | 2 cut(s) | 1495, 2187 |
| AfeI | AGCGCT | 1 cut(s) | 1229 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 167, 713, 1451, 1747, 1949, 2249, 2448 |
| AjnI | CCWGG | 5 cut(s) | 1250, 1330, 1720, 1816, 2314 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 726, 758, 2245, 2277 |
| AleI | CACNNNNGTG | 2 cut(s) | 1047, 1301 |
| Alw21I | GWGCWC | 2 cut(s) | 1378, 1674 |
| Alw26I | GTCTC | 2 cut(s) | 563, 1180 |
| Alw44I | GTGCAC | 1 cut(s) | 1374 |
| AlwI | GGATC | 8 cut(s) | 152, 1283, 1994, 2036, 2119, 2132, 2265, 2605 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1680 |
| Aor51HI | AGCGCT | 1 cut(s) | 1229 |
| AoxI | GGCC | 5 cut(s) | 1333, 1453, 1630, 2217, 2321 |
| ApaLI | GTGCAC | 1 cut(s) | 1374 |
| ApeKI | GCWGC | 6 cut(s) | 617, 875, 1000, 1208, 2282, 2406 |
| ApoI | RAATTY | 1 cut(s) | 1702 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1844, 1876 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 69, 240 |
| AspLEI | GCGC | 1 cut(s) | 1230 |
| AspS9I | GGNCC | 6 cut(s) | 1080, 1605, 1630, 1738, 1795, 2386 |
| AsuHPI | GGTGA | 3 cut(s) | 72, 117, 961 |
| AvaII | GGWCC | 5 cut(s) | 1080, 1605, 1738, 1795, 2386 |
| AxyI | CCTNAGG | 2 cut(s) | 2175, 2463 |
| BaeGI | GKGCMC | 2 cut(s) | 1378, 2430 |
| BalI | TGGCCA | 2 cut(s) | 1335, 2219 |
| BamHI | GGATCC | 1 cut(s) | 2124 |
| BanII | GRGCYC | 1 cut(s) | 721 |
| BbsI | GAAGAC | 5 cut(s) | 354, 432, 510, 1014, 2520 |
| Bbv12I | GWGCWC | 2 cut(s) | 1378, 1674 |
| BbvI | GCAGC | 6 cut(s) | 604, 862, 1012, 1195, 2269, 2418 |
| BccI | CCATC | 6 cut(s) | 1378, 1418, 1586, 2103, 2159, 2243 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 968, 1002 |
| BciT130I | CCWGG | 5 cut(s) | 1252, 1332, 1722, 1818, 2316 |
| BclI | TGATCA | 4 cut(s) | 369, 447, 1020, 1108 |
| BcoDI | GTCTC | 2 cut(s) | 563, 1180 |
| BfaI | CTAG | 8 cut(s) | 387, 465, 651, 1061, 1421, 1556, 1863, 2492 |
| BfmI | CTRYAG | 2 cut(s) | 603, 1137 |
| BfoI | RGCGCY | 1 cut(s) | 1231 |
| BfuAI | ACCTGC | 1 cut(s) | 1388 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2320 |
| BisI | GCNGC | 6 cut(s) | 618, 876, 1001, 1209, 2283, 2407 |
| BlsI | GCNGC | 6 cut(s) | 619, 877, 1002, 1210, 2284, 2408 |
| BmcAI | AGTACT | 1 cut(s) | 1495 |
| Bme1390I | CCNGG | 5 cut(s) | 1252, 1332, 1722, 1818, 2316 |
| Bme18I | GGWCC | 5 cut(s) | 1080, 1605, 1738, 1795, 2386 |
| BmgT120I | GGNCC | 6 cut(s) | 1080, 1605, 1630, 1738, 1795, 2386 |
| BmiI | GGNNCC | 7 cut(s) | 243, 264, 824, 1082, 1815, 2126, 2387 |
| BmrFI | CCNGG | 5 cut(s) | 1252, 1332, 1722, 1818, 2316 |
| BpiI | GAAGAC | 5 cut(s) | 354, 432, 510, 1014, 2520 |
| BpmI | CTGGAG | 2 cut(s) | 249, 2093 |
| BpuEI | CTTGAG | 2 cut(s) | 234, 1244 |
| BsaJI | CCNNGG | 6 cut(s) | 83, 1251, 1330, 1721, 1785, 1817 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 902, 932, 1514, 1544, 2080, 2110 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 167, 713, 1451, 1747, 1949, 2249, 2448 |
| Bse1I | ACTGG | 6 cut(s) | 266, 539, 1343, 1862, 2076, 2204 |
| Bse21I | CCTNAGG | 2 cut(s) | 2175, 2463 |
| Bse3DI | GCAATG | 2 cut(s) | 213, 1521 |
| BseBI | CCWGG | 5 cut(s) | 1252, 1332, 1722, 1818, 2316 |
| BseDI | CCNNGG | 6 cut(s) | 83, 1251, 1330, 1721, 1785, 1817 |
| BseGI | GGATG | 6 cut(s) | 424, 502, 1362, 1486, 2151, 2350 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 167, 713, 1451, 1747, 1949, 2249, 2448 |
| BseMI | GCAATG | 2 cut(s) | 213, 1521 |
| BseMII | CTCAG | 8 cut(s) | 327, 774, 842, 860, 1927, 2166, 2312, 2355 |
| BseNI | ACTGG | 6 cut(s) | 266, 539, 1343, 1862, 2076, 2204 |
| BseRI | GAGGAG | 2 cut(s) | 2104, 2286 |
| BseSI | GKGCMC | 2 cut(s) | 1378, 2430 |
| BseXI | GCAGC | 6 cut(s) | 604, 862, 1012, 1195, 2269, 2418 |
| BseYI | CCCAGC | 1 cut(s) | 1598 |
| BsgI | GTGCAG | 2 cut(s) | 1686, 2425 |
| BshFI | GGCC | 5 cut(s) | 1335, 1455, 1632, 2219, 2323 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1378, 1674 |
| BslFI | GGGAC | 1 cut(s) | 2033 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 167, 713, 1451, 1747, 1949, 2249, 2448 |
| BsmAI | GTCTC | 2 cut(s) | 563, 1180 |
| BsmFI | GGGAC | 1 cut(s) | 2033 |
| BsnI | GGCC | 5 cut(s) | 1335, 1455, 1632, 2219, 2323 |
| Bsp1286I | GDGCHC | 4 cut(s) | 721, 1378, 1674, 2430 |
| Bsp1407I | TGTACA | 1 cut(s) | 2185 |
| BspACI | CCGC | 1 cut(s) | 2595 |
| BspANI | GGCC | 5 cut(s) | 1335, 1455, 1632, 2219, 2323 |
| BspCNI | CTCAG | 8 cut(s) | 328, 773, 841, 861, 1926, 2167, 2311, 2356 |
| BspHI | TCATGA | 2 cut(s) | 73, 583 |
| BspLI | GGNNCC | 7 cut(s) | 243, 264, 824, 1082, 1815, 2126, 2387 |
| BspMI | ACCTGC | 1 cut(s) | 1388 |
| BspPI | GGATC | 8 cut(s) | 152, 1283, 1994, 2036, 2119, 2132, 2265, 2605 |
| BsrDI | GCAATG | 2 cut(s) | 213, 1521 |
| BsrGI | TGTACA | 1 cut(s) | 2185 |
| BsrI | ACTGG | 6 cut(s) | 266, 539, 1343, 1862, 2076, 2204 |
| BssECI | CCNNGG | 6 cut(s) | 83, 1251, 1330, 1721, 1785, 1817 |
| BssNAI | GTATAC | 1 cut(s) | 1220 |
| BssT1I | CCWWGG | 2 cut(s) | 83, 1785 |
| Bst1107I | GTATAC | 1 cut(s) | 1220 |
| Bst2UI | CCWGG | 5 cut(s) | 1252, 1332, 1722, 1818, 2316 |
| Bst4CI | ACNGT | 6 cut(s) | 574, 1049, 1245, 1303, 1882, 2271 |
| Bst6I | CTCTTC | 9 cut(s) | 105, 231, 552, 561, 729, 920, 1274, 1433, 1994 |
| BstAUI | TGTACA | 1 cut(s) | 2185 |
| BstC8I | GCNNGC | 8 cut(s) | 43, 256, 648, 1167, 1188, 1337, 1457, 1944 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1449, 1947, 2446 |
| BstF5I | GGATG | 6 cut(s) | 424, 502, 1362, 1486, 2151, 2350 |
| BstH2I | RGCGCY | 1 cut(s) | 1231 |
| BstHHI | GCGC | 1 cut(s) | 1230 |
| BstMAI | GTCTC | 2 cut(s) | 563, 1180 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 260, 2147, 2320 |
| BstNI | CCWGG | 5 cut(s) | 1252, 1332, 1722, 1818, 2316 |
| BstNSI | RCATGY | 3 cut(s) | 1238, 1972, 2141 |
| BstSCI | CCNGG | 5 cut(s) | 1250, 1330, 1720, 1816, 2314 |
| BstSFI | CTRYAG | 2 cut(s) | 603, 1137 |
| BstSLI | GKGCMC | 2 cut(s) | 1378, 2430 |
| BstV1I | GCAGC | 6 cut(s) | 604, 862, 1012, 1195, 2269, 2418 |
| BstV2I | GAAGAC | 5 cut(s) | 354, 432, 510, 1014, 2520 |
| BstX2I | RGATCY | 5 cut(s) | 157, 2041, 2124, 2257, 2597 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 24, 1792 |
| BstYI | RGATCY | 5 cut(s) | 157, 2041, 2124, 2257, 2597 |
| BstZ17I | GTATAC | 1 cut(s) | 1220 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2175, 2463 |
| BsuRI | GGCC | 5 cut(s) | 1335, 1455, 1632, 2219, 2323 |
| BtsCI | GGATG | 6 cut(s) | 424, 502, 1362, 1486, 2151, 2350 |
| BtsIMutI | CAGTG | 7 cut(s) | 273, 379, 457, 1376, 1855, 1887, 1921 |
| BveI | ACCTGC | 1 cut(s) | 1388 |
| Cac8I | GCNNGC | 8 cut(s) | 43, 256, 648, 1167, 1188, 1337, 1457, 1944 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1680 |
| CciI | TCATGA | 2 cut(s) | 73, 583 |
| CfoI | GCGC | 1 cut(s) | 1230 |
| Cfr13I | GGNCC | 6 cut(s) | 1080, 1605, 1630, 1738, 1795, 2386 |
| Csp6I | GTAC | 2 cut(s) | 1494, 2186 |
| CviQI | GTAC | 2 cut(s) | 1494, 2186 |
| DraI | TTTAAA | 1 cut(s) | 1393 |
| EaeI | YGGCCR | 2 cut(s) | 1333, 2217 |
| Eam1104I | CTCTTC | 9 cut(s) | 105, 231, 552, 561, 729, 920, 1274, 1433, 1994 |
| EarI | CTCTTC | 9 cut(s) | 105, 231, 552, 561, 729, 920, 1274, 1433, 1994 |
| Eco130I | CCWWGG | 2 cut(s) | 83, 1785 |
| Eco24I | GRGCYC | 1 cut(s) | 721 |
| Eco47I | GGWCC | 5 cut(s) | 1080, 1605, 1738, 1795, 2386 |
| Eco47III | AGCGCT | 1 cut(s) | 1229 |
| Eco57I | CTGAAG | 4 cut(s) | 162, 1400, 1457, 2334 |
| Eco81I | CCTNAGG | 2 cut(s) | 2175, 2463 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1449, 1947, 2446 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1080, 1630 |
| EcoRII | CCWGG | 5 cut(s) | 1250, 1330, 1720, 1816, 2314 |
| EcoT14I | CCWWGG | 2 cut(s) | 83, 1785 |
| EcoT38I | GRGCYC | 1 cut(s) | 721 |
| ErhI | CCWWGG | 2 cut(s) | 83, 1785 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1304, 1336, 2198, 2230 |
| FaqI | GGGAC | 1 cut(s) | 2033 |
| FbaI | TGATCA | 4 cut(s) | 369, 447, 1020, 1108 |
| FblI | GTMKAC | 4 cut(s) | 357, 435, 1136, 1219 |
| Fnu4HI | GCNGC | 6 cut(s) | 618, 876, 1001, 1209, 2283, 2407 |
| FokI | GGATG | 6 cut(s) | 431, 509, 1369, 1493, 2138, 2357 |
| FriOI | GRGCYC | 1 cut(s) | 721 |
| Fsp4HI | GCNGC | 6 cut(s) | 618, 876, 1001, 1209, 2283, 2407 |
| FspBI | CTAG | 8 cut(s) | 387, 465, 651, 1061, 1421, 1556, 1863, 2492 |
| GlaI | GCGC | 1 cut(s) | 1229 |
| GluI | GCNGC | 6 cut(s) | 618, 876, 1001, 1209, 2283, 2407 |
| GsaI | CCCAGC | 1 cut(s) | 1602 |
| GsuI | CTGGAG | 2 cut(s) | 249, 2093 |
| HaeII | RGCGCY | 1 cut(s) | 1231 |
| HaeIII | GGCC | 5 cut(s) | 1335, 1455, 1632, 2219, 2323 |
| HhaI | GCGC | 1 cut(s) | 1230 |
| Hin6I | GCGC | 1 cut(s) | 1228 |
| HinP1I | GCGC | 1 cut(s) | 1228 |
| HincII | GTYRAC | 1 cut(s) | 1764 |
| HindII | GTYRAC | 1 cut(s) | 1764 |
| HindIII | AAGCTT | 1 cut(s) | 1921 |
| HinfI | GANTC | 7 cut(s) | 77, 122, 580, 725, 1173, 1441, 2005 |
| HphI | GGTGA | 3 cut(s) | 72, 117, 961 |
| Hpy188I | TCNGA | 8 cut(s) | 730, 763, 1092, 1113, 1437, 1618, 2353, 2381 |
| HpyAV | CCTTC | 7 cut(s) | 168, 622, 1198, 1729, 1942, 2026, 2376 |
| HpyCH4III | ACNGT | 6 cut(s) | 574, 1049, 1245, 1303, 1882, 2271 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 260, 2147, 2320 |
| HspAI | GCGC | 1 cut(s) | 1228 |
| Ksp22I | TGATCA | 4 cut(s) | 369, 447, 1020, 1108 |
| LmnI | GCTCC | 4 cut(s) | 268, 1522, 1595, 1813 |
| Lsp1109I | GCAGC | 6 cut(s) | 604, 862, 1012, 1195, 2269, 2418 |
| MaeI | CTAG | 8 cut(s) | 387, 465, 651, 1061, 1421, 1556, 1863, 2492 |
| MaeIII | GTNAC | 3 cut(s) | 272, 1866, 1892 |
| MflI | RGATCY | 5 cut(s) | 157, 2041, 2124, 2257, 2597 |
| MhlI | GDGCHC | 4 cut(s) | 721, 1378, 1674, 2430 |
| MlsI | TGGCCA | 2 cut(s) | 1335, 2219 |
| MluCI | AATT | 6 cut(s) | 213, 1179, 1702, 2286, 2337, 2519 |
| MluNI | TGGCCA | 2 cut(s) | 1335, 2219 |
| MlyI | GAGTC | 2 cut(s) | 1182, 1450 |
| MmeI | TCCRAC | 5 cut(s) | 269, 519, 637, 1453, 1523 |
| Mox20I | TGGCCA | 2 cut(s) | 1335, 2219 |
| MroXI | GAANNNNTTC | 2 cut(s) | 69, 240 |
| MscI | TGGCCA | 2 cut(s) | 1335, 2219 |
| MseI | TTAA | 8 cut(s) | 180, 1311, 1392, 1584, 1887, 1926, 2340, 2641 |
| MslI | CAYNNNNRTG | 6 cut(s) | 365, 443, 1016, 1047, 1301, 2401 |
| Msp20I | TGGCCA | 2 cut(s) | 1335, 2219 |
| MspA1I | CMGCKG | 1 cut(s) | 1469 |
| MspR9I | CCNGG | 5 cut(s) | 1252, 1332, 1722, 1818, 2316 |
| MvaI | CCWGG | 5 cut(s) | 1252, 1332, 1722, 1818, 2316 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 260, 2147, 2320 |
| NlaIV | GGNNCC | 7 cut(s) | 243, 264, 824, 1082, 1815, 2126, 2387 |
| NmuCI | GTSAC | 3 cut(s) | 272, 1866, 1892 |
| NspI | RCATGY | 3 cut(s) | 1238, 1972, 2141 |
| OliI | CACNNNNGTG | 2 cut(s) | 1047, 1301 |
| PagI | TCATGA | 2 cut(s) | 73, 583 |
| PdmI | GAANNNNTTC | 2 cut(s) | 69, 240 |
| PfeI | GAWTC | 5 cut(s) | 77, 122, 580, 725, 2005 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 713 |
| PkrI | GCNGC | 6 cut(s) | 619, 877, 1002, 1210, 2284, 2408 |
| PleI | GAGTC | 2 cut(s) | 1181, 1449 |
| PpsI | GAGTC | 2 cut(s) | 1181, 1449 |
| PpuMI | RGGWCCY | 1 cut(s) | 1080 |
| PsiI | TTATAA | 2 cut(s) | 330, 1827 |
| Psp5II | RGGWCCY | 1 cut(s) | 1080 |
| Psp6I | CCWGG | 5 cut(s) | 1250, 1330, 1720, 1816, 2314 |
| PspFI | CCCAGC | 1 cut(s) | 1598 |
| PspGI | CCWGG | 5 cut(s) | 1250, 1330, 1720, 1816, 2314 |
| PspN4I | GGNNCC | 7 cut(s) | 243, 264, 824, 1082, 1815, 2126, 2387 |
| PspPI | GGNCC | 6 cut(s) | 1080, 1605, 1630, 1738, 1795, 2386 |
| PspPPI | RGGWCCY | 1 cut(s) | 1080 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1680 |
| PsuI | RGATCY | 5 cut(s) | 157, 2041, 2124, 2257, 2597 |
| PvuII | CAGCTG | 1 cut(s) | 1469 |
| RsaI | GTAC | 2 cut(s) | 1495, 2187 |
| RsaNI | GTAC | 2 cut(s) | 1494, 2186 |
| RseI | CAYNNNNRTG | 6 cut(s) | 365, 443, 1016, 1047, 1301, 2401 |
| SaqAI | TTAA | 8 cut(s) | 180, 1311, 1392, 1584, 1887, 1926, 2340, 2641 |
| SatI | GCNGC | 6 cut(s) | 618, 876, 1001, 1209, 2283, 2407 |
| Sau96I | GGNCC | 6 cut(s) | 1080, 1605, 1630, 1738, 1795, 2386 |
| ScaI | AGTACT | 1 cut(s) | 1495 |
| SchI | GAGTC | 2 cut(s) | 1182, 1450 |
| ScrFI | CCNGG | 5 cut(s) | 1252, 1332, 1722, 1818, 2316 |
| SduI | GDGCHC | 4 cut(s) | 721, 1378, 1674, 2430 |
| SfcI | CTRYAG | 2 cut(s) | 603, 1137 |
| SinI | GGWCC | 5 cut(s) | 1080, 1605, 1738, 1795, 2386 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 365, 443, 1016, 1047, 1301, 2401 |
| SmlI | CTYRAG | 2 cut(s) | 249, 1223 |
| SmoI | CTYRAG | 2 cut(s) | 249, 1223 |
| Sse9I | AATT | 6 cut(s) | 213, 1179, 1702, 2286, 2337, 2519 |
| SsiI | CCGC | 1 cut(s) | 2595 |
| SspMI | CTAG | 8 cut(s) | 387, 465, 651, 1061, 1421, 1556, 1863, 2492 |
| StyD4I | CCNGG | 5 cut(s) | 1250, 1330, 1720, 1816, 2314 |
| StyI | CCWWGG | 2 cut(s) | 83, 1785 |
| TaaI | ACNGT | 6 cut(s) | 574, 1049, 1245, 1303, 1882, 2271 |
| TaqI | TCGA | 2 cut(s) | 108, 978 |
| TasI | AATT | 6 cut(s) | 213, 1179, 1702, 2286, 2337, 2519 |
| TatI | WGTACW | 2 cut(s) | 1493, 2185 |
| TfiI | GAWTC | 5 cut(s) | 77, 122, 580, 725, 2005 |
| Tru1I | TTAA | 8 cut(s) | 180, 1311, 1392, 1584, 1887, 1926, 2340, 2641 |
| Tru9I | TTAA | 8 cut(s) | 180, 1311, 1392, 1584, 1887, 1926, 2340, 2641 |
| TscAI | CASTG | 7 cut(s) | 273, 379, 457, 1383, 1862, 1887, 1921 |
| TseFI | GTSAC | 3 cut(s) | 272, 1866, 1892 |
| TseI | GCWGC | 6 cut(s) | 617, 875, 1000, 1208, 2282, 2406 |
| Tsp45I | GTSAC | 3 cut(s) | 272, 1866, 1892 |
| TspRI | CASTG | 7 cut(s) | 273, 379, 457, 1383, 1862, 1887, 1921 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 713 |
| VneI | GTGCAC | 1 cut(s) | 1374 |
| VpaK11BI | GGWCC | 5 cut(s) | 1080, 1605, 1738, 1795, 2386 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1449, 1947, 2446 |
| XapI | RAATTY | 1 cut(s) | 1702 |
| XbaI | TCTAGA | 1 cut(s) | 1555 |
| XceI | RCATGY | 3 cut(s) | 1238, 1972, 2141 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 814, 1854 |
| XmiI | GTMKAC | 4 cut(s) | 357, 435, 1136, 1219 |
| XmnI | GAANNNNTTC | 2 cut(s) | 69, 240 |
| XspI | CTAG | 8 cut(s) | 387, 465, 651, 1061, 1421, 1556, 1863, 2492 |
| ZrmI | AGTACT | 1 cut(s) | 1495 |