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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1203 |
| AclWI | GGATC | 5 cut(s) | 507, 520, 629, 831, 844 |
| AcuI | CTGAAG | 2 cut(s) | 570, 611 |
| AfaI | GTAC | 7 cut(s) | 374, 459, 788, 896, 1034, 1195, 1208 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 77, 326, 654, 735, 1154, 1203, 1315 |
| AflII | CTTAAG | 1 cut(s) | 532 |
| AjnI | CCWGG | 1 cut(s) | 1352 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 492, 524, 1306, 1338 |
| AluBI | AGCT | 8 cut(s) | 191, 224, 523, 531, 817, 911, 1283, 1433 |
| AluI | AGCT | 8 cut(s) | 191, 224, 523, 531, 817, 911, 1283, 1433 |
| Alw21I | GWGCWC | 2 cut(s) | 1101, 1303 |
| Alw26I | GTCTC | 1 cut(s) | 1064 |
| AlwI | GGATC | 5 cut(s) | 507, 520, 629, 831, 844 |
| AoxI | GGCC | 4 cut(s) | 246, 738, 869, 941 |
| ApeKI | GCWGC | 9 cut(s) | 176, 188, 262, 316, 800, 979, 1001, 1280, 1415 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1326, 1358 |
| AspA2I | CCTAGG | 1 cut(s) | 986 |
| AspS9I | GGNCC | 4 cut(s) | 68, 738, 869, 1350 |
| AsuHPI | GGTGA | 2 cut(s) | 110, 137 |
| AvaII | GGWCC | 2 cut(s) | 68, 1350 |
| AvrII | CCTAGG | 1 cut(s) | 986 |
| BamHI | GGATCC | 2 cut(s) | 512, 836 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1115, 1147, 1384, 1416 |
| Bbv12I | GWGCWC | 2 cut(s) | 1101, 1303 |
| BbvI | GCAGC | 9 cut(s) | 188, 200, 274, 328, 787, 991, 1013, 1292, 1427 |
| BccI | CCATC | 6 cut(s) | 479, 737, 860, 922, 953, 1351 |
| BceAI | ACGGC | 1 cut(s) | 1197 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1094, 1128 |
| BciT130I | CCWGG | 1 cut(s) | 1354 |
| BcoDI | GTCTC | 1 cut(s) | 1064 |
| BfaI | CTAG | 4 cut(s) | 9, 39, 192, 987 |
| BfrI | CTTAAG | 1 cut(s) | 532 |
| BglII | AGATCT | 1 cut(s) | 626 |
| BisI | GCNGC | 9 cut(s) | 177, 189, 263, 317, 801, 980, 1002, 1281, 1416 |
| BlnI | CCTAGG | 1 cut(s) | 986 |
| BlpI | GCTNAGC | 1 cut(s) | 1095 |
| BlsI | GCNGC | 9 cut(s) | 178, 190, 264, 318, 802, 981, 1003, 1282, 1417 |
| Bme1390I | CCNGG | 1 cut(s) | 1354 |
| Bme18I | GGWCC | 2 cut(s) | 68, 1350 |
| BmgT120I | GGNCC | 4 cut(s) | 68, 738, 869, 1350 |
| BmiI | GGNNCC | 2 cut(s) | 514, 838 |
| BmrFI | CCNGG | 1 cut(s) | 1354 |
| BmsI | GCATC | 2 cut(s) | 991, 1006 |
| BpmI | CTGGAG | 1 cut(s) | 1305 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1095 |
| BpuEI | CTTGAG | 3 cut(s) | 545, 721, 1046 |
| BsaJI | CCNNGG | 2 cut(s) | 986, 1202 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 594, 624 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 77, 326, 654, 735, 1154, 1203, 1315 |
| Bse1I | ACTGG | 2 cut(s) | 784, 872 |
| Bse3DI | GCAATG | 2 cut(s) | 1038, 1050 |
| BseBI | CCWGG | 1 cut(s) | 1354 |
| BseDI | CCNNGG | 2 cut(s) | 986, 1202 |
| BseGI | GGATG | 9 cut(s) | 562, 765, 871, 897, 933, 964, 982, 1259, 1362 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 77, 326, 654, 735, 1154, 1203, 1315 |
| BseMI | GCAATG | 2 cut(s) | 1038, 1050 |
| BseMII | CTCAG | 1 cut(s) | 1086 |
| BseNI | ACTGG | 2 cut(s) | 784, 872 |
| BseRI | GAGGAG | 1 cut(s) | 1400 |
| BseXI | GCAGC | 9 cut(s) | 188, 200, 274, 328, 787, 991, 1013, 1292, 1427 |
| BseYI | CCCAGC | 1 cut(s) | 449 |
| BsgI | GTGCAG | 1 cut(s) | 1434 |
| BshFI | GGCC | 4 cut(s) | 248, 740, 871, 943 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1101, 1303 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 77, 326, 654, 735, 1154, 1203, 1315 |
| BsmAI | GTCTC | 1 cut(s) | 1064 |
| BsmI | GAATGC | 1 cut(s) | 668 |
| BsnI | GGCC | 4 cut(s) | 248, 740, 871, 943 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1101, 1303 |
| Bsp1407I | TGTACA | 1 cut(s) | 894 |
| Bsp143I | GATC | 4 cut(s) | 512, 621, 626, 836 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1095 |
| BspANI | GGCC | 4 cut(s) | 248, 740, 871, 943 |
| BspCNI | CTCAG | 1 cut(s) | 1087 |
| BspLI | GGNNCC | 2 cut(s) | 514, 838 |
| BspPI | GGATC | 5 cut(s) | 507, 520, 629, 831, 844 |
| BspQI | GCTCTTC | 1 cut(s) | 495 |
| BspTI | CTTAAG | 1 cut(s) | 532 |
| BsrDI | GCAATG | 2 cut(s) | 1038, 1050 |
| BsrGI | TGTACA | 1 cut(s) | 894 |
| BsrI | ACTGG | 2 cut(s) | 784, 872 |
| BssECI | CCNNGG | 2 cut(s) | 986, 1202 |
| BssMI | GATC | 4 cut(s) | 512, 621, 626, 836 |
| BssT1I | CCWWGG | 2 cut(s) | 986, 1202 |
| Bst2UI | CCWGG | 1 cut(s) | 1354 |
| Bst4CI | ACNGT | 3 cut(s) | 131, 494, 844 |
| Bst6I | CTCTTC | 6 cut(s) | 155, 192, 203, 338, 495, 546 |
| BstAFI | CTTAAG | 1 cut(s) | 532 |
| BstAUI | TGTACA | 1 cut(s) | 894 |
| BstC8I | GCNNGC | 3 cut(s) | 186, 750, 913 |
| BstDEI | CTNAG | 2 cut(s) | 1070, 1095 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 324, 1313 |
| BstF5I | GGATG | 9 cut(s) | 562, 765, 871, 897, 933, 964, 982, 1259, 1362 |
| BstKTI | GATC | 4 cut(s) | 515, 624, 629, 839 |
| BstMAI | GTCTC | 1 cut(s) | 1064 |
| BstMBI | GATC | 4 cut(s) | 512, 621, 626, 836 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 185, 245, 988, 1277, 1286 |
| BstNI | CCWGG | 1 cut(s) | 1354 |
| BstNSI | RCATGY | 2 cut(s) | 509, 1079 |
| BstSCI | CCNGG | 1 cut(s) | 1352 |
| BstV1I | GCAGC | 9 cut(s) | 188, 200, 274, 328, 787, 991, 1013, 1292, 1427 |
| BstX2I | RGATCY | 3 cut(s) | 512, 626, 836 |
| BstYI | RGATCY | 3 cut(s) | 512, 626, 836 |
| BsuRI | GGCC | 4 cut(s) | 248, 740, 871, 943 |
| BtsCI | GGATG | 9 cut(s) | 562, 765, 871, 897, 933, 964, 982, 1259, 1362 |
| BtsI | GCAGTG | 2 cut(s) | 692, 1296 |
| BtsIMutI | CAGTG | 3 cut(s) | 136, 692, 1296 |
| Cac8I | GCNNGC | 3 cut(s) | 186, 750, 913 |
| Cfr13I | GGNCC | 4 cut(s) | 68, 738, 869, 1350 |
| Csp6I | GTAC | 7 cut(s) | 373, 458, 787, 895, 1033, 1194, 1207 |
| CviAII | CATG | 3 cut(s) | 455, 506, 1076 |
| CviQI | GTAC | 7 cut(s) | 373, 458, 787, 895, 1033, 1194, 1207 |
| DdeI | CTNAG | 2 cut(s) | 1070, 1095 |
| DpnI | GATC | 4 cut(s) | 514, 623, 628, 838 |
| DpnII | GATC | 4 cut(s) | 512, 621, 626, 836 |
| Eam1104I | CTCTTC | 6 cut(s) | 155, 192, 203, 338, 495, 546 |
| EarI | CTCTTC | 6 cut(s) | 155, 192, 203, 338, 495, 546 |
| Eco130I | CCWWGG | 2 cut(s) | 986, 1202 |
| Eco147I | AGGCCT | 2 cut(s) | 248, 943 |
| Eco47I | GGWCC | 2 cut(s) | 68, 1350 |
| Eco57I | CTGAAG | 2 cut(s) | 570, 611 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 324, 1313 |
| EcoRII | CCWGG | 1 cut(s) | 1352 |
| EcoT14I | CCWWGG | 2 cut(s) | 986, 1202 |
| ErhI | CCWWGG | 2 cut(s) | 986, 1202 |
| FaeI | CATG | 3 cut(s) | 458, 509, 1079 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 683, 715 |
| FatI | CATG | 3 cut(s) | 454, 505, 1075 |
| FauNDI | CATATG | 3 cut(s) | 899, 950, 1218 |
| Fnu4HI | GCNGC | 9 cut(s) | 177, 189, 263, 317, 801, 980, 1002, 1281, 1416 |
| FokI | GGATG | 9 cut(s) | 569, 772, 878, 904, 940, 969, 971, 1266, 1369 |
| Fsp4HI | GCNGC | 9 cut(s) | 177, 189, 263, 317, 801, 980, 1002, 1281, 1416 |
| FspBI | CTAG | 4 cut(s) | 9, 39, 192, 987 |
| GluI | GCNGC | 9 cut(s) | 177, 189, 263, 317, 801, 980, 1002, 1281, 1416 |
| GsaI | CCCAGC | 1 cut(s) | 453 |
| GsuI | CTGGAG | 1 cut(s) | 1305 |
| HaeIII | GGCC | 4 cut(s) | 248, 740, 871, 943 |
| Hin1II | CATG | 3 cut(s) | 458, 509, 1079 |
| HindIII | AAGCTT | 2 cut(s) | 909, 1431 |
| HinfI | GANTC | 6 cut(s) | 35, 365, 568, 882, 1057, 1144 |
| HphI | GGTGA | 2 cut(s) | 110, 137 |
| Hpy166II | GTNNAC | 2 cut(s) | 68, 375 |
| Hpy188I | TCNGA | 4 cut(s) | 499, 517, 591, 626 |
| Hpy188III | TCNNGA | 2 cut(s) | 39, 1063 |
| Hpy8I | GTNNAC | 2 cut(s) | 68, 375 |
| HpyCH4III | ACNGT | 3 cut(s) | 131, 494, 844 |
| HpyCH4V | TGCA | 8 cut(s) | 443, 668, 752, 803, 915, 1019, 1043, 1415 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 185, 245, 988, 1277, 1286 |
| HpyF3I | CTNAG | 2 cut(s) | 1070, 1095 |
| Hsp92II | CATG | 3 cut(s) | 458, 509, 1079 |
| Kzo9I | GATC | 4 cut(s) | 512, 621, 626, 836 |
| LguI | GCTCTTC | 1 cut(s) | 495 |
| LmnI | GCTCC | 2 cut(s) | 814, 1286 |
| Lsp1109I | GCAGC | 9 cut(s) | 188, 200, 274, 328, 787, 991, 1013, 1292, 1427 |
| LweI | GCATC | 2 cut(s) | 991, 1006 |
| MaeI | CTAG | 4 cut(s) | 9, 39, 192, 987 |
| MaeIII | GTNAC | 1 cut(s) | 125 |
| MalI | GATC | 4 cut(s) | 514, 623, 628, 838 |
| MboI | GATC | 4 cut(s) | 512, 621, 626, 836 |
| MflI | RGATCY | 3 cut(s) | 512, 626, 836 |
| MhlI | GDGCHC | 2 cut(s) | 1101, 1303 |
| MluCI | AATT | 3 cut(s) | 650, 1247, 1260 |
| MlyI | GAGTC | 1 cut(s) | 1066 |
| MmeI | TCCRAC | 3 cut(s) | 490, 905, 988 |
| MseI | TTAA | 5 cut(s) | 533, 612, 852, 972, 1435 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1043 |
| MspA1I | CMGCKG | 1 cut(s) | 1283 |
| MspCI | CTTAAG | 1 cut(s) | 532 |
| MspR9I | CCNGG | 1 cut(s) | 1354 |
| Mva1269I | GAATGC | 1 cut(s) | 668 |
| MvaI | CCWGG | 1 cut(s) | 1354 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 185, 245, 988, 1277, 1286 |
| NdeI | CATATG | 3 cut(s) | 899, 950, 1218 |
| NdeII | GATC | 4 cut(s) | 512, 621, 626, 836 |
| NlaIII | CATG | 3 cut(s) | 458, 509, 1079 |
| NlaIV | GGNNCC | 2 cut(s) | 514, 838 |
| NmuCI | GTSAC | 1 cut(s) | 125 |
| NspI | RCATGY | 2 cut(s) | 509, 1079 |
| PceI | AGGCCT | 2 cut(s) | 248, 943 |
| PciSI | GCTCTTC | 1 cut(s) | 495 |
| PctI | GAATGC | 1 cut(s) | 668 |
| PfeI | GAWTC | 5 cut(s) | 35, 365, 568, 882, 1144 |
| PflFI | GACNNNGTC | 1 cut(s) | 72 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1203 |
| PfoI | TCCNGGA | 1 cut(s) | 1352 |
| PkrI | GCNGC | 9 cut(s) | 178, 190, 264, 318, 802, 981, 1003, 1282, 1417 |
| PleI | GAGTC | 1 cut(s) | 1065 |
| PpsI | GAGTC | 1 cut(s) | 1065 |
| Psp6I | CCWGG | 1 cut(s) | 1352 |
| PspFI | CCCAGC | 1 cut(s) | 449 |
| PspGI | CCWGG | 1 cut(s) | 1352 |
| PspN4I | GGNNCC | 2 cut(s) | 514, 838 |
| PspPI | GGNCC | 4 cut(s) | 68, 738, 869, 1350 |
| PsuI | RGATCY | 3 cut(s) | 512, 626, 836 |
| PsyI | GACNNNGTC | 1 cut(s) | 72 |
| PvuII | CAGCTG | 1 cut(s) | 1283 |
| RsaI | GTAC | 7 cut(s) | 374, 459, 788, 896, 1034, 1195, 1208 |
| RsaNI | GTAC | 7 cut(s) | 373, 458, 787, 895, 1033, 1194, 1207 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1043 |
| SapI | GCTCTTC | 1 cut(s) | 495 |
| SaqAI | TTAA | 5 cut(s) | 533, 612, 852, 972, 1435 |
| SatI | GCNGC | 9 cut(s) | 177, 189, 263, 317, 801, 980, 1002, 1281, 1416 |
| Sau3AI | GATC | 4 cut(s) | 512, 621, 626, 836 |
| Sau96I | GGNCC | 4 cut(s) | 68, 738, 869, 1350 |
| SchI | GAGTC | 1 cut(s) | 1066 |
| ScrFI | CCNGG | 1 cut(s) | 1354 |
| SduI | GDGCHC | 2 cut(s) | 1101, 1303 |
| SfaNI | GCATC | 2 cut(s) | 991, 1006 |
| SinI | GGWCC | 2 cut(s) | 68, 1350 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1043 |
| SmlI | CTYRAG | 4 cut(s) | 524, 532, 700, 1061 |
| SmoI | CTYRAG | 4 cut(s) | 524, 532, 700, 1061 |
| Sse9I | AATT | 3 cut(s) | 650, 1247, 1260 |
| SseBI | AGGCCT | 2 cut(s) | 248, 943 |
| SspMI | CTAG | 4 cut(s) | 9, 39, 192, 987 |
| StuI | AGGCCT | 2 cut(s) | 248, 943 |
| StyD4I | CCNGG | 1 cut(s) | 1352 |
| StyI | CCWWGG | 2 cut(s) | 986, 1202 |
| TaaI | ACNGT | 3 cut(s) | 131, 494, 844 |
| TaqI | TCGA | 2 cut(s) | 368, 1114 |
| TasI | AATT | 3 cut(s) | 650, 1247, 1260 |
| TatI | WGTACW | 2 cut(s) | 786, 894 |
| TfiI | GAWTC | 5 cut(s) | 35, 365, 568, 882, 1144 |
| Tru1I | TTAA | 5 cut(s) | 533, 612, 852, 972, 1435 |
| Tru9I | TTAA | 5 cut(s) | 533, 612, 852, 972, 1435 |
| TscAI | CASTG | 3 cut(s) | 136, 692, 1296 |
| TseFI | GTSAC | 1 cut(s) | 125 |
| TseI | GCWGC | 9 cut(s) | 176, 188, 262, 316, 800, 979, 1001, 1280, 1415 |
| Tsp45I | GTSAC | 1 cut(s) | 125 |
| TspDTI | ATGAA | 5 cut(s) | 483, 573, 766, 776, 780 |
| TspRI | CASTG | 3 cut(s) | 136, 692, 1296 |
| Tth111I | GACNNNGTC | 1 cut(s) | 72 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1203 |
| Vha464I | CTTAAG | 1 cut(s) | 532 |
| VpaK11BI | GGWCC | 2 cut(s) | 68, 1350 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 324, 1313 |
| XbaI | TCTAGA | 1 cut(s) | 38 |
| XceI | RCATGY | 2 cut(s) | 509, 1079 |
| XmaJI | CCTAGG | 1 cut(s) | 986 |
| XspI | CTAG | 4 cut(s) | 9, 39, 192, 987 |