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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 852 |
| Acc36I | ACCTGC | 1 cut(s) | 505 |
| AccII | CGCG | 1 cut(s) | 8 |
| AciI | CCGC | 1 cut(s) | 6 |
| AclWI | GGATC | 2 cut(s) | 1783, 1796 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 3 cut(s) | 149, 817, 1103 |
| AfaI | GTAC | 2 cut(s) | 693, 1111 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1646, 1764 |
| AflII | CTTAAG | 2 cut(s) | 98, 121 |
| AjnI | CCWGG | 2 cut(s) | 856, 865 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 420, 452 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1007, 1039 |
| AluBI | AGCT | 6 cut(s) | 389, 462, 641, 1379, 1391, 1434 |
| AluI | AGCT | 6 cut(s) | 389, 462, 641, 1379, 1391, 1434 |
| Alw21I | GWGCWC | 2 cut(s) | 1156, 1244 |
| Alw26I | GTCTC | 3 cut(s) | 269, 926, 1264 |
| Alw44I | GTGCAC | 1 cut(s) | 1240 |
| AlwI | GGATC | 2 cut(s) | 1783, 1796 |
| AoxI | GGCC | 4 cut(s) | 3, 1535, 1652, 1700 |
| ApaLI | GTGCAC | 1 cut(s) | 1240 |
| ApeKI | GCWGC | 5 cut(s) | 576, 1192, 1604, 1682, 1751 |
| ApoI | RAATTY | 3 cut(s) | 149, 817, 1103 |
| AspS9I | GGNCC | 3 cut(s) | 367, 655, 1535 |
| AsuHPI | GGTGA | 8 cut(s) | 223, 281, 452, 599, 722, 872, 977, 1279 |
| AvaII | GGWCC | 2 cut(s) | 367, 655 |
| AxyI | CCTNAGG | 1 cut(s) | 483 |
| BaeGI | GKGCMC | 1 cut(s) | 1244 |
| BamHI | GGATCC | 1 cut(s) | 1788 |
| BanII | GRGCYC | 1 cut(s) | 1825 |
| BbsI | GAAGAC | 1 cut(s) | 1761 |
| Bbv12I | GWGCWC | 2 cut(s) | 1156, 1244 |
| BbvI | GCAGC | 5 cut(s) | 588, 1204, 1591, 1669, 1738 |
| BccI | CCATC | 6 cut(s) | 874, 911, 956, 974, 1245, 1258 |
| BceAI | ACGGC | 1 cut(s) | 1522 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1733, 1767 |
| BciT130I | CCWGG | 2 cut(s) | 858, 867 |
| BclI | TGATCA | 2 cut(s) | 163, 778 |
| BcoDI | GTCTC | 3 cut(s) | 269, 926, 1264 |
| BfaI | CTAG | 5 cut(s) | 492, 1484, 1580, 1662, 1698 |
| BfmI | CTRYAG | 1 cut(s) | 259 |
| BfrI | CTTAAG | 2 cut(s) | 98, 121 |
| BfuAI | ACCTGC | 1 cut(s) | 505 |
| BisI | GCNGC | 6 cut(s) | 6, 577, 1193, 1605, 1683, 1752 |
| BlsI | GCNGC | 6 cut(s) | 7, 578, 1194, 1606, 1684, 1753 |
| Bme1390I | CCNGG | 2 cut(s) | 858, 867 |
| Bme18I | GGWCC | 2 cut(s) | 367, 655 |
| BmgT120I | GGNCC | 3 cut(s) | 367, 655, 1535 |
| BmiI | GGNNCC | 5 cut(s) | 30, 489, 540, 1790, 1824 |
| BmrFI | CCNGG | 2 cut(s) | 858, 867 |
| BmsI | GCATC | 6 cut(s) | 204, 295, 367, 730, 1057, 1694 |
| BpiI | GAAGAC | 1 cut(s) | 1761 |
| BpuEI | CTTGAG | 2 cut(s) | 531, 1714 |
| BsaBI | GATNNNNATC | 1 cut(s) | 762 |
| BsaJI | CCNNGG | 2 cut(s) | 1090, 1640 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1646, 1764 |
| Bse21I | CCTNAGG | 1 cut(s) | 483 |
| Bse3DI | GCAATG | 1 cut(s) | 1195 |
| Bse8I | GATNNNNATC | 1 cut(s) | 762 |
| BseBI | CCWGG | 2 cut(s) | 858, 867 |
| BseDI | CCNNGG | 2 cut(s) | 1090, 1640 |
| BseGI | GGATG | 5 cut(s) | 382, 745, 967, 1072, 1306 |
| BseJI | GATNNNNATC | 1 cut(s) | 762 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1646, 1764 |
| BseMI | GCAATG | 1 cut(s) | 1195 |
| BseMII | CTCAG | 1 cut(s) | 474 |
| BseRI | GAGGAG | 2 cut(s) | 488, 500 |
| BseSI | GKGCMC | 1 cut(s) | 1244 |
| BseXI | GCAGC | 5 cut(s) | 588, 1204, 1591, 1669, 1738 |
| BseYI | CCCAGC | 1 cut(s) | 1387 |
| Bsh1236I | CGCG | 1 cut(s) | 8 |
| BshFI | GGCC | 4 cut(s) | 5, 1537, 1654, 1702 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1156, 1244 |
| BslFI | GGGAC | 2 cut(s) | 172, 1268 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1646, 1764 |
| BsmAI | GTCTC | 3 cut(s) | 269, 926, 1264 |
| BsmBI | CGTCTC | 1 cut(s) | 1264 |
| BsmFI | GGGAC | 2 cut(s) | 172, 1268 |
| BsnI | GGCC | 4 cut(s) | 5, 1537, 1654, 1702 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1156, 1244, 1825 |
| Bsp143I | GATC | 5 cut(s) | 163, 778, 1212, 1491, 1788 |
| BspACI | CCGC | 1 cut(s) | 6 |
| BspANI | GGCC | 4 cut(s) | 5, 1537, 1654, 1702 |
| BspCNI | CTCAG | 1 cut(s) | 475 |
| BspFNI | CGCG | 1 cut(s) | 8 |
| BspHI | TCATGA | 1 cut(s) | 766 |
| BspLI | GGNNCC | 5 cut(s) | 30, 489, 540, 1790, 1824 |
| BspMI | ACCTGC | 1 cut(s) | 505 |
| BspPI | GGATC | 2 cut(s) | 1783, 1796 |
| BspQI | GCTCTTC | 1 cut(s) | 1369 |
| BspTI | CTTAAG | 2 cut(s) | 98, 121 |
| BsrDI | GCAATG | 1 cut(s) | 1195 |
| BssECI | CCNNGG | 2 cut(s) | 1090, 1640 |
| BssMI | GATC | 5 cut(s) | 163, 778, 1212, 1491, 1788 |
| BssT1I | CCWWGG | 2 cut(s) | 1090, 1640 |
| Bst2UI | CCWGG | 2 cut(s) | 858, 867 |
| Bst4CI | ACNGT | 4 cut(s) | 1051, 1114, 1163, 1403 |
| Bst6I | CTCTTC | 5 cut(s) | 836, 879, 924, 1369, 1482 |
| BstAFI | CTTAAG | 2 cut(s) | 98, 121 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1691 |
| BstDEI | CTNAG | 5 cut(s) | 44, 483, 504, 1464, 1793 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1762 |
| BstF5I | GGATG | 5 cut(s) | 382, 745, 967, 1072, 1306 |
| BstFNI | CGCG | 1 cut(s) | 8 |
| BstKTI | GATC | 5 cut(s) | 166, 781, 1215, 1494, 1791 |
| BstMAI | GTCTC | 3 cut(s) | 269, 926, 1264 |
| BstMBI | GATC | 5 cut(s) | 163, 778, 1212, 1491, 1788 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 386, 487, 1376, 1613, 1682, 1691 |
| BstNI | CCWGG | 2 cut(s) | 858, 867 |
| BstNSI | RCATGY | 2 cut(s) | 664, 1411 |
| BstSCI | CCNGG | 2 cut(s) | 856, 865 |
| BstSFI | CTRYAG | 1 cut(s) | 259 |
| BstSLI | GKGCMC | 1 cut(s) | 1244 |
| BstUI | CGCG | 1 cut(s) | 8 |
| BstV1I | GCAGC | 5 cut(s) | 588, 1204, 1591, 1669, 1738 |
| BstV2I | GAAGAC | 1 cut(s) | 1761 |
| BstX2I | RGATCY | 1 cut(s) | 1788 |
| BstYI | RGATCY | 1 cut(s) | 1788 |
| Bsu36I | CCTNAGG | 1 cut(s) | 483 |
| BsuRI | GGCC | 4 cut(s) | 5, 1537, 1654, 1702 |
| BtsCI | GGATG | 5 cut(s) | 382, 745, 967, 1072, 1306 |
| BtsI | GCAGTG | 2 cut(s) | 568, 843 |
| BtsIMutI | CAGTG | 4 cut(s) | 568, 789, 843, 1815 |
| BveI | ACCTGC | 1 cut(s) | 505 |
| CciI | TCATGA | 1 cut(s) | 766 |
| Cfr13I | GGNCC | 3 cut(s) | 367, 655, 1535 |
| CsiI | ACCWGGT | 1 cut(s) | 856 |
| Csp6I | GTAC | 2 cut(s) | 692, 1110 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1079, 1114 |
| CviAII | CATG | 9 cut(s) | 110, 167, 208, 373, 418, 661, 767, 1036, 1408 |
| CviQI | GTAC | 2 cut(s) | 692, 1110 |
| DdeI | CTNAG | 5 cut(s) | 44, 483, 504, 1464, 1793 |
| DpnI | GATC | 5 cut(s) | 165, 780, 1214, 1493, 1790 |
| DpnII | GATC | 5 cut(s) | 163, 778, 1212, 1491, 1788 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 5 cut(s) | 836, 879, 924, 1369, 1482 |
| EarI | CTCTTC | 5 cut(s) | 836, 879, 924, 1369, 1482 |
| Eco130I | CCWWGG | 2 cut(s) | 1090, 1640 |
| Eco24I | GRGCYC | 1 cut(s) | 1825 |
| Eco47I | GGWCC | 2 cut(s) | 367, 655 |
| Eco81I | CCTNAGG | 1 cut(s) | 483 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1762 |
| EcoRII | CCWGG | 2 cut(s) | 856, 865 |
| EcoT14I | CCWWGG | 2 cut(s) | 1090, 1640 |
| EcoT22I | ATGCAT | 1 cut(s) | 612 |
| EcoT38I | GRGCYC | 1 cut(s) | 1825 |
| ErhI | CCWWGG | 2 cut(s) | 1090, 1640 |
| Esp3I | CGTCTC | 1 cut(s) | 1264 |
| FaeI | CATG | 9 cut(s) | 113, 170, 211, 376, 421, 664, 770, 1039, 1411 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1013, 1045 |
| FaqI | GGGAC | 2 cut(s) | 172, 1268 |
| FatI | CATG | 9 cut(s) | 109, 166, 207, 372, 417, 660, 766, 1035, 1407 |
| FauNDI | CATATG | 1 cut(s) | 1145 |
| FbaI | TGATCA | 2 cut(s) | 163, 778 |
| Fnu4HI | GCNGC | 6 cut(s) | 6, 577, 1193, 1605, 1683, 1752 |
| FokI | GGATG | 5 cut(s) | 389, 752, 974, 1079, 1313 |
| FriOI | GRGCYC | 1 cut(s) | 1825 |
| Fsp4HI | GCNGC | 6 cut(s) | 6, 577, 1193, 1605, 1683, 1752 |
| FspBI | CTAG | 5 cut(s) | 492, 1484, 1580, 1662, 1698 |
| GluI | GCNGC | 6 cut(s) | 6, 577, 1193, 1605, 1683, 1752 |
| GsaI | CCCAGC | 1 cut(s) | 1391 |
| HaeIII | GGCC | 4 cut(s) | 5, 1537, 1654, 1702 |
| Hin1II | CATG | 9 cut(s) | 113, 170, 211, 376, 421, 664, 770, 1039, 1411 |
| HincII | GTYRAC | 1 cut(s) | 1542 |
| HindII | GTYRAC | 1 cut(s) | 1542 |
| HinfI | GANTC | 9 cut(s) | 223, 396, 719, 725, 1140, 1315, 1510, 1516, 1543 |
| HphI | GGTGA | 8 cut(s) | 223, 281, 452, 599, 722, 872, 977, 1279 |
| Hpy166II | GTNNAC | 3 cut(s) | 172, 1242, 1542 |
| Hpy188I | TCNGA | 6 cut(s) | 304, 724, 730, 925, 1496, 1515 |
| Hpy188III | TCNNGA | 4 cut(s) | 767, 1210, 1216, 1229 |
| Hpy8I | GTNNAC | 3 cut(s) | 172, 1242, 1542 |
| HpyAV | CCTTC | 7 cut(s) | 584, 611, 764, 949, 1006, 1558, 1644 |
| HpyCH4III | ACNGT | 4 cut(s) | 1051, 1114, 1163, 1403 |
| HpyCH4IV | ACGT | 1 cut(s) | 705 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 386, 487, 1376, 1613, 1682, 1691 |
| HpyF3I | CTNAG | 5 cut(s) | 44, 483, 504, 1464, 1793 |
| HpySE526I | ACGT | 1 cut(s) | 705 |
| Hsp92II | CATG | 9 cut(s) | 113, 170, 211, 376, 421, 664, 770, 1039, 1411 |
| Ksp22I | TGATCA | 2 cut(s) | 163, 778 |
| Kzo9I | GATC | 5 cut(s) | 163, 778, 1212, 1491, 1788 |
| LguI | GCTCTTC | 1 cut(s) | 1369 |
| LmnI | GCTCC | 3 cut(s) | 487, 1723, 1828 |
| Lsp1109I | GCAGC | 5 cut(s) | 588, 1204, 1591, 1669, 1738 |
| LweI | GCATC | 6 cut(s) | 204, 295, 367, 730, 1057, 1694 |
| MabI | ACCWGGT | 1 cut(s) | 856 |
| MaeI | CTAG | 5 cut(s) | 492, 1484, 1580, 1662, 1698 |
| MaeII | ACGT | 1 cut(s) | 705 |
| MaeIII | GTNAC | 7 cut(s) | 58, 77, 155, 251, 826, 1121, 1403 |
| MalI | GATC | 5 cut(s) | 165, 780, 1214, 1493, 1790 |
| MboI | GATC | 5 cut(s) | 163, 778, 1212, 1491, 1788 |
| MflI | RGATCY | 1 cut(s) | 1788 |
| MhlI | GDGCHC | 3 cut(s) | 1156, 1244, 1825 |
| MluCI | AATT | 8 cut(s) | 149, 290, 428, 817, 847, 968, 1103, 1553 |
| MlyI | GAGTC | 3 cut(s) | 1149, 1519, 1537 |
| MmeI | TCCRAC | 1 cut(s) | 1493 |
| Mph1103I | ATGCAT | 1 cut(s) | 612 |
| MslI | CAYNNNNRTG | 3 cut(s) | 197, 212, 375 |
| MspA1I | CMGCKG | 1 cut(s) | 1391 |
| MspCI | CTTAAG | 2 cut(s) | 98, 121 |
| MspR9I | CCNGG | 2 cut(s) | 858, 867 |
| MvaI | CCWGG | 2 cut(s) | 858, 867 |
| MvnI | CGCG | 1 cut(s) | 8 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 386, 487, 1376, 1613, 1682, 1691 |
| NdeI | CATATG | 1 cut(s) | 1145 |
| NdeII | GATC | 5 cut(s) | 163, 778, 1212, 1491, 1788 |
| NlaIII | CATG | 9 cut(s) | 113, 170, 211, 376, 421, 664, 770, 1039, 1411 |
| NlaIV | GGNNCC | 5 cut(s) | 30, 489, 540, 1790, 1824 |
| NmuCI | GTSAC | 3 cut(s) | 826, 1121, 1403 |
| NsiI | ATGCAT | 1 cut(s) | 612 |
| NspI | RCATGY | 2 cut(s) | 664, 1411 |
| PagI | TCATGA | 1 cut(s) | 766 |
| PciSI | GCTCTTC | 1 cut(s) | 1369 |
| PfeI | GAWTC | 6 cut(s) | 223, 396, 719, 725, 1315, 1516 |
| PflFI | GACNNNGTC | 1 cut(s) | 1765 |
| PkrI | GCNGC | 6 cut(s) | 7, 578, 1194, 1606, 1684, 1753 |
| PleI | GAGTC | 3 cut(s) | 1148, 1518, 1537 |
| PpsI | GAGTC | 3 cut(s) | 1148, 1518, 1537 |
| PsiI | TTATAA | 1 cut(s) | 852 |
| Psp6I | CCWGG | 2 cut(s) | 856, 865 |
| PspFI | CCCAGC | 1 cut(s) | 1387 |
| PspGI | CCWGG | 2 cut(s) | 856, 865 |
| PspN4I | GGNNCC | 5 cut(s) | 30, 489, 540, 1790, 1824 |
| PspPI | GGNCC | 3 cut(s) | 367, 655, 1535 |
| PsuI | RGATCY | 1 cut(s) | 1788 |
| PsyI | GACNNNGTC | 1 cut(s) | 1765 |
| PvuII | CAGCTG | 1 cut(s) | 1391 |
| RsaI | GTAC | 2 cut(s) | 693, 1111 |
| RsaNI | GTAC | 2 cut(s) | 692, 1110 |
| RseI | CAYNNNNRTG | 3 cut(s) | 197, 212, 375 |
| SapI | GCTCTTC | 1 cut(s) | 1369 |
| SatI | GCNGC | 6 cut(s) | 6, 577, 1193, 1605, 1683, 1752 |
| Sau3AI | GATC | 5 cut(s) | 163, 778, 1212, 1491, 1788 |
| Sau96I | GGNCC | 3 cut(s) | 367, 655, 1535 |
| SchI | GAGTC | 3 cut(s) | 1149, 1519, 1537 |
| ScrFI | CCNGG | 2 cut(s) | 858, 867 |
| SduI | GDGCHC | 3 cut(s) | 1156, 1244, 1825 |
| SexAI | ACCWGGT | 1 cut(s) | 856 |
| SfaNI | GCATC | 6 cut(s) | 204, 295, 367, 730, 1057, 1694 |
| SfcI | CTRYAG | 1 cut(s) | 259 |
| SinI | GGWCC | 2 cut(s) | 367, 655 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 197, 212, 375 |
| SmlI | CTYRAG | 4 cut(s) | 98, 121, 546, 1729 |
| SmoI | CTYRAG | 4 cut(s) | 98, 121, 546, 1729 |
| Sse9I | AATT | 8 cut(s) | 149, 290, 428, 817, 847, 968, 1103, 1553 |
| SsiI | CCGC | 1 cut(s) | 6 |
| SspMI | CTAG | 5 cut(s) | 492, 1484, 1580, 1662, 1698 |
| StyD4I | CCNGG | 2 cut(s) | 856, 865 |
| StyI | CCWWGG | 2 cut(s) | 1090, 1640 |
| TaaI | ACNGT | 4 cut(s) | 1051, 1114, 1163, 1403 |
| TaiI | ACGT | 1 cut(s) | 708 |
| TaqI | TCGA | 7 cut(s) | 18, 34, 40, 399, 1053, 1760, 1782 |
| TasI | AATT | 8 cut(s) | 149, 290, 428, 817, 847, 968, 1103, 1553 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TfiI | GAWTC | 6 cut(s) | 223, 396, 719, 725, 1315, 1516 |
| TscAI | CASTG | 4 cut(s) | 568, 796, 843, 1815 |
| TseFI | GTSAC | 3 cut(s) | 826, 1121, 1403 |
| TseI | GCWGC | 5 cut(s) | 576, 1192, 1604, 1682, 1751 |
| Tsp45I | GTSAC | 3 cut(s) | 826, 1121, 1403 |
| TspGWI | ACGGA | 1 cut(s) | 1815 |
| TspRI | CASTG | 4 cut(s) | 568, 796, 843, 1815 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1765 |
| Vha464I | CTTAAG | 2 cut(s) | 98, 121 |
| VneI | GTGCAC | 1 cut(s) | 1240 |
| VpaK11BI | GGWCC | 2 cut(s) | 367, 655 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1762 |
| XapI | RAATTY | 3 cut(s) | 149, 817, 1103 |
| XceI | RCATGY | 2 cut(s) | 664, 1411 |
| XspI | CTAG | 5 cut(s) | 492, 1484, 1580, 1662, 1698 |
| Zsp2I | ATGCAT | 1 cut(s) | 612 |