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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 652 |
| Acc36I | ACCTGC | 1 cut(s) | 652 |
| AclWI | GGATC | 1 cut(s) | 143 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 406, 657 |
| AflIII | ACRYGT | 1 cut(s) | 282 |
| AgsI | TTSAA | 6 cut(s) | 82, 472, 523, 572, 586, 715 |
| AjnI | CCWGG | 1 cut(s) | 310 |
| AluBI | AGCT | 6 cut(s) | 188, 542, 589, 689, 731, 792 |
| AluI | AGCT | 6 cut(s) | 188, 542, 589, 689, 731, 792 |
| Alw21I | GWGCWC | 2 cut(s) | 76, 259 |
| Alw44I | GTGCAC | 2 cut(s) | 72, 255 |
| AlwI | GGATC | 1 cut(s) | 143 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 270 |
| AoxI | GGCC | 1 cut(s) | 440 |
| ApaLI | GTGCAC | 2 cut(s) | 72, 255 |
| ApeKI | GCWGC | 3 cut(s) | 689, 789, 792 |
| AspS9I | GGNCC | 2 cut(s) | 247, 328 |
| AsuHPI | GGTGA | 2 cut(s) | 553, 619 |
| AvaII | GGWCC | 2 cut(s) | 247, 328 |
| BaeGI | GKGCMC | 2 cut(s) | 76, 259 |
| BanII | GRGCYC | 2 cut(s) | 22, 225 |
| Bbv12I | GWGCWC | 2 cut(s) | 76, 259 |
| BbvCI | CCTCAGC | 1 cut(s) | 732 |
| BbvI | GCAGC | 3 cut(s) | 676, 779, 801 |
| BccI | CCATC | 1 cut(s) | 176 |
| BciT130I | CCWGG | 1 cut(s) | 312 |
| BfaI | CTAG | 1 cut(s) | 543 |
| BfmI | CTRYAG | 1 cut(s) | 793 |
| BfuAI | ACCTGC | 1 cut(s) | 652 |
| BisI | GCNGC | 3 cut(s) | 690, 790, 793 |
| BlsI | GCNGC | 3 cut(s) | 691, 791, 794 |
| Bme1390I | CCNGG | 1 cut(s) | 312 |
| Bme18I | GGWCC | 2 cut(s) | 247, 328 |
| BmgT120I | GGNCC | 2 cut(s) | 247, 328 |
| BmiI | GGNNCC | 2 cut(s) | 19, 249 |
| BmrFI | CCNGG | 1 cut(s) | 312 |
| BmsI | GCATC | 1 cut(s) | 400 |
| Bpu10I | CCTNAGC | 1 cut(s) | 732 |
| BpuEI | CTTGAG | 1 cut(s) | 8 |
| BsaJI | CCNNGG | 2 cut(s) | 310, 656 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 406, 657 |
| Bse118I | RCCGGY | 1 cut(s) | 229 |
| Bse1I | ACTGG | 3 cut(s) | 480, 557, 817 |
| Bse3DI | GCAATG | 1 cut(s) | 120 |
| BseBI | CCWGG | 1 cut(s) | 312 |
| BseDI | CCNNGG | 2 cut(s) | 310, 656 |
| BseGI | GGATG | 5 cut(s) | 50, 415, 429, 439, 730 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 406, 657 |
| BseMI | GCAATG | 1 cut(s) | 120 |
| BseMII | CTCAG | 1 cut(s) | 723 |
| BseNI | ACTGG | 3 cut(s) | 480, 557, 817 |
| BseRI | GAGGAG | 1 cut(s) | 401 |
| BseSI | GKGCMC | 2 cut(s) | 76, 259 |
| BseXI | GCAGC | 3 cut(s) | 676, 779, 801 |
| BseYI | CCCAGC | 1 cut(s) | 188 |
| BshFI | GGCC | 1 cut(s) | 442 |
| BsiHKAI | GWGCWC | 2 cut(s) | 76, 259 |
| BsiSI | CCGG | 1 cut(s) | 230 |
| BslFI | GGGAC | 1 cut(s) | 233 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 406, 657 |
| BsmFI | GGGAC | 1 cut(s) | 233 |
| BsmI | GAATGC | 1 cut(s) | 464 |
| BsnI | GGCC | 1 cut(s) | 442 |
| Bsp1286I | GDGCHC | 4 cut(s) | 22, 76, 225, 259 |
| Bsp1407I | TGTACA | 1 cut(s) | 3 |
| Bsp143I | GATC | 2 cut(s) | 135, 171 |
| BspANI | GGCC | 1 cut(s) | 442 |
| BspCNI | CTCAG | 1 cut(s) | 724 |
| BspLI | GGNNCC | 2 cut(s) | 19, 249 |
| BspMAI | CTGCAG | 1 cut(s) | 797 |
| BspMI | ACCTGC | 1 cut(s) | 652 |
| BspPI | GGATC | 1 cut(s) | 143 |
| BspQI | GCTCTTC | 1 cut(s) | 668 |
| BsrDI | GCAATG | 1 cut(s) | 120 |
| BsrFI | RCCGGY | 1 cut(s) | 229 |
| BsrGI | TGTACA | 1 cut(s) | 3 |
| BsrI | ACTGG | 3 cut(s) | 480, 557, 817 |
| BssAI | RCCGGY | 1 cut(s) | 229 |
| BssECI | CCNNGG | 2 cut(s) | 310, 656 |
| BssMI | GATC | 2 cut(s) | 135, 171 |
| BssT1I | CCWWGG | 1 cut(s) | 656 |
| Bst2UI | CCWGG | 1 cut(s) | 312 |
| Bst6I | CTCTTC | 2 cut(s) | 590, 668 |
| BstAUI | TGTACA | 1 cut(s) | 3 |
| BstC8I | GCNNGC | 3 cut(s) | 65, 827, 831 |
| BstDEI | CTNAG | 3 cut(s) | 732, 773, 854 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 404 |
| BstF5I | GGATG | 5 cut(s) | 50, 415, 429, 439, 730 |
| BstKTI | GATC | 2 cut(s) | 138, 174 |
| BstMBI | GATC | 2 cut(s) | 135, 171 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 220, 689, 839 |
| BstNI | CCWGG | 1 cut(s) | 312 |
| BstNSI | RCATGY | 3 cut(s) | 286, 789, 833 |
| BstSCI | CCNGG | 1 cut(s) | 310 |
| BstSFI | CTRYAG | 1 cut(s) | 793 |
| BstSLI | GKGCMC | 2 cut(s) | 76, 259 |
| BstV1I | GCAGC | 3 cut(s) | 676, 779, 801 |
| BstX2I | RGATCY | 1 cut(s) | 135 |
| BstYI | RGATCY | 1 cut(s) | 135 |
| BsuRI | GGCC | 1 cut(s) | 442 |
| BtsCI | GGATG | 5 cut(s) | 50, 415, 429, 439, 730 |
| BveI | ACCTGC | 1 cut(s) | 652 |
| Cac8I | GCNNGC | 3 cut(s) | 65, 827, 831 |
| CaiI | CAGNNNCTG | 1 cut(s) | 270 |
| Cfr10I | RCCGGY | 1 cut(s) | 229 |
| Cfr13I | GGNCC | 2 cut(s) | 247, 328 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 9 cut(s) | 68, 132, 283, 382, 528, 565, 786, 822, 830 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 3 cut(s) | 732, 773, 854 |
| DpnI | GATC | 2 cut(s) | 137, 173 |
| DpnII | GATC | 2 cut(s) | 135, 171 |
| Eam1104I | CTCTTC | 2 cut(s) | 590, 668 |
| EarI | CTCTTC | 2 cut(s) | 590, 668 |
| Eco130I | CCWWGG | 1 cut(s) | 656 |
| Eco147I | AGGCCT | 1 cut(s) | 442 |
| Eco24I | GRGCYC | 2 cut(s) | 22, 225 |
| Eco47I | GGWCC | 2 cut(s) | 247, 328 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 404 |
| EcoRII | CCWGG | 1 cut(s) | 310 |
| EcoT14I | CCWWGG | 1 cut(s) | 656 |
| EcoT38I | GRGCYC | 2 cut(s) | 22, 225 |
| ErhI | CCWWGG | 1 cut(s) | 656 |
| FaeI | CATG | 9 cut(s) | 71, 135, 286, 385, 531, 568, 789, 825, 833 |
| FaqI | GGGAC | 1 cut(s) | 233 |
| FatI | CATG | 9 cut(s) | 67, 131, 282, 381, 527, 564, 785, 821, 829 |
| Fnu4HI | GCNGC | 3 cut(s) | 690, 790, 793 |
| FokI | GGATG | 5 cut(s) | 57, 422, 436, 446, 737 |
| FriOI | GRGCYC | 2 cut(s) | 22, 225 |
| Fsp4HI | GCNGC | 3 cut(s) | 690, 790, 793 |
| FspBI | CTAG | 1 cut(s) | 543 |
| GluI | GCNGC | 3 cut(s) | 690, 790, 793 |
| GsaI | CCCAGC | 1 cut(s) | 192 |
| HaeIII | GGCC | 1 cut(s) | 442 |
| HapII | CCGG | 1 cut(s) | 230 |
| Hin1II | CATG | 9 cut(s) | 71, 135, 286, 385, 531, 568, 789, 825, 833 |
| HindIII | AAGCTT | 1 cut(s) | 587 |
| HinfI | GANTC | 4 cut(s) | 33, 128, 769, 816 |
| HpaII | CCGG | 1 cut(s) | 230 |
| HphI | GGTGA | 2 cut(s) | 553, 619 |
| Hpy166II | GTNNAC | 4 cut(s) | 74, 257, 288, 354 |
| Hpy188III | TCNNGA | 1 cut(s) | 25 |
| Hpy8I | GTNNAC | 4 cut(s) | 74, 257, 288, 354 |
| HpyAV | CCTTC | 4 cut(s) | 319, 606, 629, 743 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 220, 689, 839 |
| HpyF3I | CTNAG | 3 cut(s) | 732, 773, 854 |
| Hsp92II | CATG | 9 cut(s) | 71, 135, 286, 385, 531, 568, 789, 825, 833 |
| Kzo9I | GATC | 2 cut(s) | 135, 171 |
| LguI | GCTCTTC | 1 cut(s) | 668 |
| LmnI | GCTCC | 2 cut(s) | 17, 185 |
| Lsp1109I | GCAGC | 3 cut(s) | 676, 779, 801 |
| LweI | GCATC | 1 cut(s) | 400 |
| MaeI | CTAG | 1 cut(s) | 543 |
| MaeIII | GTNAC | 3 cut(s) | 206, 482, 559 |
| MalI | GATC | 2 cut(s) | 137, 173 |
| MboI | GATC | 2 cut(s) | 135, 171 |
| MboII | GAAGA | 5 cut(s) | 191, 460, 584, 607, 685 |
| MfeI | CAATTG | 1 cut(s) | 418 |
| MflI | RGATCY | 1 cut(s) | 135 |
| MhlI | GDGCHC | 4 cut(s) | 22, 76, 225, 259 |
| MluCI | AATT | 2 cut(s) | 418, 834 |
| MlyI | GAGTC | 1 cut(s) | 122 |
| MmeI | TCCRAC | 1 cut(s) | 648 |
| MseI | TTAA | 2 cut(s) | 296, 375 |
| MslI | CAYNNNNRTG | 1 cut(s) | 359 |
| MspA1I | CMGCKG | 1 cut(s) | 792 |
| MspI | CCGG | 1 cut(s) | 230 |
| MspR9I | CCNGG | 1 cut(s) | 312 |
| MunI | CAATTG | 1 cut(s) | 418 |
| Mva1269I | GAATGC | 1 cut(s) | 464 |
| MvaI | CCWGG | 1 cut(s) | 312 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 220, 689, 839 |
| NdeII | GATC | 2 cut(s) | 135, 171 |
| NlaIII | CATG | 9 cut(s) | 71, 135, 286, 385, 531, 568, 789, 825, 833 |
| NlaIV | GGNNCC | 2 cut(s) | 19, 249 |
| NmuCI | GTSAC | 2 cut(s) | 206, 559 |
| NspI | RCATGY | 3 cut(s) | 286, 789, 833 |
| PaeI | GCATGC | 1 cut(s) | 833 |
| PaqCI | CACCTGC | 1 cut(s) | 652 |
| PceI | AGGCCT | 1 cut(s) | 442 |
| PciI | ACATGT | 1 cut(s) | 282 |
| PciSI | GCTCTTC | 1 cut(s) | 668 |
| PctI | GAATGC | 1 cut(s) | 464 |
| PfeI | GAWTC | 3 cut(s) | 33, 769, 816 |
| PkrI | GCNGC | 3 cut(s) | 691, 791, 794 |
| PleI | GAGTC | 1 cut(s) | 122 |
| PpsI | GAGTC | 1 cut(s) | 122 |
| PscI | ACATGT | 1 cut(s) | 282 |
| Psp6I | CCWGG | 1 cut(s) | 310 |
| PspFI | CCCAGC | 1 cut(s) | 188 |
| PspGI | CCWGG | 1 cut(s) | 310 |
| PspN4I | GGNNCC | 2 cut(s) | 19, 249 |
| PspPI | GGNCC | 2 cut(s) | 247, 328 |
| PstI | CTGCAG | 1 cut(s) | 797 |
| PstNI | CAGNNNCTG | 1 cut(s) | 270 |
| PsuI | RGATCY | 1 cut(s) | 135 |
| PvuII | CAGCTG | 1 cut(s) | 792 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| RseI | CAYNNNNRTG | 1 cut(s) | 359 |
| SapI | GCTCTTC | 1 cut(s) | 668 |
| SaqAI | TTAA | 2 cut(s) | 296, 375 |
| SatI | GCNGC | 3 cut(s) | 690, 790, 793 |
| Sau3AI | GATC | 2 cut(s) | 135, 171 |
| Sau96I | GGNCC | 2 cut(s) | 247, 328 |
| SchI | GAGTC | 1 cut(s) | 122 |
| ScrFI | CCNGG | 1 cut(s) | 312 |
| SduI | GDGCHC | 4 cut(s) | 22, 76, 225, 259 |
| SfaNI | GCATC | 1 cut(s) | 400 |
| SfcI | CTRYAG | 1 cut(s) | 793 |
| SinI | GGWCC | 2 cut(s) | 247, 328 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 359 |
| SmlI | CTYRAG | 1 cut(s) | 23 |
| SmoI | CTYRAG | 1 cut(s) | 23 |
| SphI | GCATGC | 1 cut(s) | 833 |
| Sse9I | AATT | 2 cut(s) | 418, 834 |
| SseBI | AGGCCT | 1 cut(s) | 442 |
| SspI | AATATT | 1 cut(s) | 643 |
| SspMI | CTAG | 1 cut(s) | 543 |
| StuI | AGGCCT | 1 cut(s) | 442 |
| StyD4I | CCNGG | 1 cut(s) | 310 |
| StyI | CCWWGG | 1 cut(s) | 656 |
| TaqI | TCGA | 1 cut(s) | 174 |
| TasI | AATT | 2 cut(s) | 418, 834 |
| TatI | WGTACW | 1 cut(s) | 3 |
| TfiI | GAWTC | 3 cut(s) | 33, 769, 816 |
| Tru1I | TTAA | 2 cut(s) | 296, 375 |
| Tru9I | TTAA | 2 cut(s) | 296, 375 |
| TseFI | GTSAC | 2 cut(s) | 206, 559 |
| TseI | GCWGC | 3 cut(s) | 689, 789, 792 |
| Tsp45I | GTSAC | 2 cut(s) | 206, 559 |
| TspDTI | ATGAA | 5 cut(s) | 338, 407, 608, 648, 741 |
| VneI | GTGCAC | 2 cut(s) | 72, 255 |
| VpaK11BI | GGWCC | 2 cut(s) | 247, 328 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 404 |
| XceI | RCATGY | 3 cut(s) | 286, 789, 833 |
| XspI | CTAG | 1 cut(s) | 543 |