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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 494 |
| AclWI | GGATC | 1 cut(s) | 509 |
| AcsI | RAATTY | 2 cut(s) | 170, 322 |
| AcuI | CTGAAG | 1 cut(s) | 300 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 457 |
| AflIII | ACRYGT | 2 cut(s) | 191, 410 |
| AgsI | TTSAA | 2 cut(s) | 255, 299 |
| AjnI | CCWGG | 1 cut(s) | 61 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 273, 305 |
| AluBI | AGCT | 3 cut(s) | 284, 307, 362 |
| AluI | AGCT | 3 cut(s) | 284, 307, 362 |
| Alw21I | GWGCWC | 1 cut(s) | 400 |
| Alw44I | GTGCAC | 1 cut(s) | 396 |
| AlwI | GGATC | 1 cut(s) | 509 |
| AoxI | GGCC | 1 cut(s) | 68 |
| ApaLI | GTGCAC | 1 cut(s) | 396 |
| ApeKI | GCWGC | 1 cut(s) | 58 |
| ApoI | RAATTY | 2 cut(s) | 170, 322 |
| AsuC2I | CCSGG | 1 cut(s) | 499 |
| BaeGI | GKGCMC | 1 cut(s) | 400 |
| Bbv12I | GWGCWC | 1 cut(s) | 400 |
| BbvI | GCAGC | 1 cut(s) | 70 |
| BccI | CCATC | 1 cut(s) | 41 |
| BciT130I | CCWGG | 1 cut(s) | 63 |
| BciVI | GTATCC | 1 cut(s) | 247 |
| BcnI | CCSGG | 1 cut(s) | 499 |
| BfaI | CTAG | 2 cut(s) | 393, 486 |
| BfuI | GTATCC | 1 cut(s) | 247 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 67 |
| BisI | GCNGC | 1 cut(s) | 59 |
| BlsI | GCNGC | 1 cut(s) | 60 |
| Bme1390I | CCNGG | 2 cut(s) | 63, 499 |
| BmrFI | CCNGG | 2 cut(s) | 63, 499 |
| BmsI | GCATC | 5 cut(s) | 34, 82, 367, 398, 455 |
| Bpu10I | CCTNAGC | 1 cut(s) | 441 |
| BpuMI | CCSGG | 1 cut(s) | 499 |
| BsaAI | YACGTR | 1 cut(s) | 413 |
| BsaJI | CCNNGG | 2 cut(s) | 62, 516 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 457 |
| Bse118I | RCCGGY | 1 cut(s) | 54 |
| BseBI | CCWGG | 1 cut(s) | 63 |
| BseDI | CCNNGG | 2 cut(s) | 62, 516 |
| BseGI | GGATG | 6 cut(s) | 25, 33, 97, 382, 446, 526 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 457 |
| BseMII | CTCAG | 2 cut(s) | 90, 287 |
| BseSI | GKGCMC | 1 cut(s) | 400 |
| BseXI | GCAGC | 1 cut(s) | 70 |
| BshFI | GGCC | 1 cut(s) | 70 |
| BsiHKAI | GWGCWC | 1 cut(s) | 400 |
| BsiSI | CCGG | 2 cut(s) | 55, 499 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 457 |
| BsnI | GGCC | 1 cut(s) | 70 |
| Bsp1286I | GDGCHC | 1 cut(s) | 400 |
| Bsp143I | GATC | 2 cut(s) | 143, 501 |
| BspANI | GGCC | 1 cut(s) | 70 |
| BspCNI | CTCAG | 2 cut(s) | 91, 286 |
| BspPI | GGATC | 1 cut(s) | 509 |
| BsrFI | RCCGGY | 1 cut(s) | 54 |
| BssAI | RCCGGY | 1 cut(s) | 54 |
| BssECI | CCNNGG | 2 cut(s) | 62, 516 |
| BssMI | GATC | 2 cut(s) | 143, 501 |
| BssT1I | CCWWGG | 1 cut(s) | 516 |
| Bst2UI | CCWGG | 1 cut(s) | 63 |
| Bst4CI | ACNGT | 2 cut(s) | 18, 289 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 395 |
| BstBAI | YACGTR | 1 cut(s) | 413 |
| BstDEI | CTNAG | 6 cut(s) | 99, 273, 347, 363, 441, 456 |
| BstF5I | GGATG | 6 cut(s) | 25, 33, 97, 382, 446, 526 |
| BstKTI | GATC | 2 cut(s) | 146, 504 |
| BstMBI | GATC | 2 cut(s) | 143, 501 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 67, 359, 386, 395 |
| BstNI | CCWGG | 1 cut(s) | 63 |
| BstNSI | RCATGY | 1 cut(s) | 195 |
| BstSCI | CCNGG | 2 cut(s) | 61, 497 |
| BstSLI | GKGCMC | 1 cut(s) | 400 |
| BstV1I | GCAGC | 1 cut(s) | 70 |
| BsuI | GTATCC | 1 cut(s) | 247 |
| BsuRI | GGCC | 1 cut(s) | 70 |
| BtsCI | GGATG | 6 cut(s) | 25, 33, 97, 382, 446, 526 |
| Cfr10I | RCCGGY | 1 cut(s) | 54 |
| CseI | GACGC | 1 cut(s) | 480 |
| CviAII | CATG | 1 cut(s) | 192 |
| CviJI | RGCY | 6 cut(s) | 61, 70, 284, 307, 362, 428 |
| CviKI_1 | RGCY | 6 cut(s) | 61, 70, 284, 307, 362, 428 |
| DdeI | CTNAG | 6 cut(s) | 99, 273, 347, 363, 441, 456 |
| DpnI | GATC | 2 cut(s) | 145, 503 |
| DpnII | GATC | 2 cut(s) | 143, 501 |
| Eco130I | CCWWGG | 1 cut(s) | 516 |
| Eco57I | CTGAAG | 1 cut(s) | 300 |
| EcoRII | CCWGG | 1 cut(s) | 61 |
| EcoT14I | CCWWGG | 1 cut(s) | 516 |
| ErhI | CCWWGG | 1 cut(s) | 516 |
| FaeI | CATG | 1 cut(s) | 195 |
| FaiI | YATR | 3 cut(s) | 21, 123, 193 |
| FatI | CATG | 1 cut(s) | 191 |
| FblI | GTMKAC | 1 cut(s) | 494 |
| Fnu4HI | GCNGC | 1 cut(s) | 59 |
| FokI | GGATG | 5 cut(s) | 12, 20, 104, 389, 433 |
| Fsp4HI | GCNGC | 1 cut(s) | 59 |
| FspBI | CTAG | 2 cut(s) | 393, 486 |
| GluI | GCNGC | 1 cut(s) | 59 |
| HaeIII | GGCC | 1 cut(s) | 70 |
| HapII | CCGG | 2 cut(s) | 55, 499 |
| HgaI | GACGC | 1 cut(s) | 480 |
| Hin1II | CATG | 1 cut(s) | 195 |
| HincII | GTYRAC | 1 cut(s) | 408 |
| HindII | GTYRAC | 1 cut(s) | 408 |
| HindIII | AAGCTT | 1 cut(s) | 305 |
| HinfI | GANTC | 2 cut(s) | 84, 473 |
| HpaII | CCGG | 2 cut(s) | 55, 499 |
| Hpy166II | GTNNAC | 3 cut(s) | 398, 408, 495 |
| Hpy188I | TCNGA | 5 cut(s) | 100, 276, 312, 506, 527 |
| Hpy188III | TCNNGA | 1 cut(s) | 117 |
| Hpy8I | GTNNAC | 3 cut(s) | 398, 408, 495 |
| HpyAV | CCTTC | 3 cut(s) | 47, 126, 238 |
| HpyCH4III | ACNGT | 2 cut(s) | 18, 289 |
| HpyCH4IV | ACGT | 1 cut(s) | 412 |
| HpyCH4V | TGCA | 3 cut(s) | 263, 380, 398 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 67, 359, 386, 395 |
| HpyF3I | CTNAG | 6 cut(s) | 99, 273, 347, 363, 441, 456 |
| HpySE526I | ACGT | 1 cut(s) | 412 |
| Hsp92II | CATG | 1 cut(s) | 195 |
| Kzo9I | GATC | 2 cut(s) | 143, 501 |
| LpnPI | CCDG | 5 cut(s) | 48, 68, 75, 102, 512 |
| Lsp1109I | GCAGC | 1 cut(s) | 70 |
| LweI | GCATC | 5 cut(s) | 34, 82, 367, 398, 455 |
| MaeI | CTAG | 2 cut(s) | 393, 486 |
| MaeII | ACGT | 1 cut(s) | 412 |
| MaeIII | GTNAC | 1 cut(s) | 135 |
| MalI | GATC | 2 cut(s) | 145, 503 |
| MboI | GATC | 2 cut(s) | 143, 501 |
| MboII | GAAGA | 1 cut(s) | 119 |
| MhlI | GDGCHC | 1 cut(s) | 400 |
| MluCI | AATT | 3 cut(s) | 125, 170, 322 |
| MlyI | GAGTC | 1 cut(s) | 467 |
| MmeI | TCCRAC | 3 cut(s) | 271, 293, 505 |
| MnlI | CCTC | 3 cut(s) | 51, 60, 349 |
| MseI | TTAA | 1 cut(s) | 186 |
| MspI | CCGG | 2 cut(s) | 55, 499 |
| MspR9I | CCNGG | 2 cut(s) | 63, 499 |
| MvaI | CCWGG | 1 cut(s) | 63 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 67, 359, 386, 395 |
| NciI | CCSGG | 1 cut(s) | 499 |
| NdeII | GATC | 2 cut(s) | 143, 501 |
| NlaIII | CATG | 1 cut(s) | 195 |
| NmeAIII | GCCGAG | 1 cut(s) | 96 |
| NmuCI | GTSAC | 1 cut(s) | 135 |
| NspI | RCATGY | 1 cut(s) | 195 |
| PciI | ACATGT | 1 cut(s) | 191 |
| PfeI | GAWTC | 1 cut(s) | 84 |
| PkrI | GCNGC | 1 cut(s) | 60 |
| PleI | GAGTC | 1 cut(s) | 467 |
| PpsI | GAGTC | 1 cut(s) | 467 |
| Ppu21I | YACGTR | 1 cut(s) | 413 |
| PscI | ACATGT | 1 cut(s) | 191 |
| Psp6I | CCWGG | 1 cut(s) | 61 |
| PspGI | CCWGG | 1 cut(s) | 61 |
| SaqAI | TTAA | 1 cut(s) | 186 |
| SatI | GCNGC | 1 cut(s) | 59 |
| Sau3AI | GATC | 2 cut(s) | 143, 501 |
| SchI | GAGTC | 1 cut(s) | 467 |
| ScrFI | CCNGG | 2 cut(s) | 63, 499 |
| SduI | GDGCHC | 1 cut(s) | 400 |
| SetI | ASST | 5 cut(s) | 137, 286, 309, 364, 415 |
| SfaNI | GCATC | 5 cut(s) | 34, 82, 367, 398, 455 |
| Sse9I | AATT | 3 cut(s) | 125, 170, 322 |
| SspMI | CTAG | 2 cut(s) | 393, 486 |
| StyD4I | CCNGG | 2 cut(s) | 61, 497 |
| StyI | CCWWGG | 1 cut(s) | 516 |
| TaaI | ACNGT | 2 cut(s) | 18, 289 |
| TaiI | ACGT | 1 cut(s) | 415 |
| TasI | AATT | 3 cut(s) | 125, 170, 322 |
| TfiI | GAWTC | 1 cut(s) | 84 |
| Tru1I | TTAA | 1 cut(s) | 186 |
| Tru9I | TTAA | 1 cut(s) | 186 |
| TseFI | GTSAC | 1 cut(s) | 135 |
| TseI | GCWGC | 1 cut(s) | 58 |
| Tsp45I | GTSAC | 1 cut(s) | 135 |
| TspDTI | ATGAA | 1 cut(s) | 420 |
| VneI | GTGCAC | 1 cut(s) | 396 |
| XapI | RAATTY | 2 cut(s) | 170, 322 |
| XceI | RCATGY | 1 cut(s) | 195 |
| XmiI | GTMKAC | 1 cut(s) | 494 |
| XspI | CTAG | 2 cut(s) | 393, 486 |