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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 385 |
| AciI | CCGC | 1 cut(s) | 498 |
| AclWI | GGATC | 1 cut(s) | 427 |
| AfaI | GTAC | 1 cut(s) | 541 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 162 |
| AflIII | ACRYGT | 1 cut(s) | 461 |
| AgsI | TTSAA | 5 cut(s) | 28, 77, 220, 657, 729 |
| AluBI | AGCT | 7 cut(s) | 24, 94, 134, 160, 635, 671, 707 |
| AluI | AGCT | 7 cut(s) | 24, 94, 134, 160, 635, 671, 707 |
| Alw26I | GTCTC | 1 cut(s) | 222 |
| AlwI | GGATC | 1 cut(s) | 427 |
| AoxI | GGCC | 1 cut(s) | 495 |
| ApeKI | GCWGC | 3 cut(s) | 566, 671, 707 |
| AsuC2I | CCSGG | 1 cut(s) | 371 |
| AsuHPI | GGTGA | 2 cut(s) | 100, 283 |
| BanI | GGYRCC | 1 cut(s) | 385 |
| BanII | GRGCYC | 1 cut(s) | 260 |
| BbsI | GAAGAC | 2 cut(s) | 410, 584 |
| BbvCI | CCTCAGC | 1 cut(s) | 237 |
| BbvI | GCAGC | 3 cut(s) | 553, 658, 694 |
| BccI | CCATC | 3 cut(s) | 556, 625, 727 |
| BcnI | CCSGG | 1 cut(s) | 371 |
| BcoDI | GTCTC | 1 cut(s) | 222 |
| BfaI | CTAG | 1 cut(s) | 48 |
| BisI | GCNGC | 4 cut(s) | 498, 567, 672, 708 |
| BlsI | GCNGC | 4 cut(s) | 499, 568, 673, 709 |
| Bme1390I | CCNGG | 1 cut(s) | 371 |
| BmiI | GGNNCC | 1 cut(s) | 387 |
| BmrFI | CCNGG | 1 cut(s) | 371 |
| BmsI | GCATC | 2 cut(s) | 719, 761 |
| BpiI | GAAGAC | 2 cut(s) | 410, 584 |
| Bpu10I | CCTNAGC | 2 cut(s) | 161, 237 |
| BpuEI | CTTGAG | 1 cut(s) | 383 |
| BpuMI | CCSGG | 1 cut(s) | 371 |
| BsaJI | CCNNGG | 1 cut(s) | 139 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 162 |
| Bse1I | ACTGG | 1 cut(s) | 322 |
| Bse3DI | GCAATG | 2 cut(s) | 207, 231 |
| BseDI | CCNNGG | 1 cut(s) | 139 |
| BseGI | GGATG | 3 cut(s) | 379, 542, 567 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 162 |
| BseMI | GCAATG | 2 cut(s) | 207, 231 |
| BseMII | CTCAG | 1 cut(s) | 228 |
| BseNI | ACTGG | 1 cut(s) | 322 |
| BseXI | GCAGC | 3 cut(s) | 553, 658, 694 |
| BshFI | GGCC | 1 cut(s) | 497 |
| BshNI | GGYRCC | 1 cut(s) | 385 |
| BsiSI | CCGG | 1 cut(s) | 371 |
| BslFI | GGGAC | 2 cut(s) | 323, 353 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 162 |
| BsmAI | GTCTC | 1 cut(s) | 222 |
| BsmFI | GGGAC | 2 cut(s) | 323, 353 |
| BsnI | GGCC | 1 cut(s) | 497 |
| Bsp1286I | GDGCHC | 1 cut(s) | 260 |
| Bsp143I | GATC | 1 cut(s) | 432 |
| Bsp19I | CCATGG | 1 cut(s) | 139 |
| BspACI | CCGC | 1 cut(s) | 498 |
| BspANI | GGCC | 1 cut(s) | 497 |
| BspCNI | CTCAG | 1 cut(s) | 229 |
| BspLI | GGNNCC | 1 cut(s) | 387 |
| BspPI | GGATC | 1 cut(s) | 427 |
| BspT107I | GGYRCC | 1 cut(s) | 385 |
| BsrDI | GCAATG | 2 cut(s) | 207, 231 |
| BsrI | ACTGG | 1 cut(s) | 322 |
| BssECI | CCNNGG | 1 cut(s) | 139 |
| BssMI | GATC | 1 cut(s) | 432 |
| BssT1I | CCWWGG | 1 cut(s) | 139 |
| Bst6I | CTCTTC | 3 cut(s) | 72, 95, 509 |
| BstC8I | GCNNGC | 2 cut(s) | 332, 705 |
| BstDEI | CTNAG | 4 cut(s) | 161, 237, 645, 747 |
| BstDSI | CCRYGG | 1 cut(s) | 139 |
| BstF5I | GGATG | 3 cut(s) | 379, 542, 567 |
| BstKTI | GATC | 1 cut(s) | 435 |
| BstMAI | GTCTC | 1 cut(s) | 222 |
| BstMBI | GATC | 1 cut(s) | 432 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 30, 423, 632, 668, 677, 713 |
| BstNSI | RCATGY | 3 cut(s) | 294, 338, 465 |
| BstSCI | CCNGG | 1 cut(s) | 369 |
| BstV1I | GCAGC | 3 cut(s) | 553, 658, 694 |
| BstV2I | GAAGAC | 2 cut(s) | 410, 584 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 443 |
| BsuRI | GGCC | 1 cut(s) | 497 |
| BtgI | CCRYGG | 1 cut(s) | 139 |
| BtsCI | GGATG | 3 cut(s) | 379, 542, 567 |
| Cac8I | GCNNGC | 2 cut(s) | 332, 705 |
| Csp6I | GTAC | 1 cut(s) | 540 |
| CviAII | CATG | 9 cut(s) | 62, 70, 140, 291, 313, 335, 355, 390, 462 |
| CviQI | GTAC | 1 cut(s) | 540 |
| DdeI | CTNAG | 4 cut(s) | 161, 237, 645, 747 |
| DpnI | GATC | 1 cut(s) | 434 |
| DpnII | GATC | 1 cut(s) | 432 |
| Eam1104I | CTCTTC | 3 cut(s) | 72, 95, 509 |
| EarI | CTCTTC | 3 cut(s) | 72, 95, 509 |
| Eco130I | CCWWGG | 1 cut(s) | 139 |
| Eco24I | GRGCYC | 1 cut(s) | 260 |
| EcoT14I | CCWWGG | 1 cut(s) | 139 |
| EcoT38I | GRGCYC | 1 cut(s) | 260 |
| ErhI | CCWWGG | 1 cut(s) | 139 |
| FaeI | CATG | 9 cut(s) | 65, 73, 143, 294, 316, 338, 358, 393, 465 |
| FaqI | GGGAC | 2 cut(s) | 323, 353 |
| FatI | CATG | 9 cut(s) | 61, 69, 139, 290, 312, 334, 354, 389, 461 |
| Fnu4HI | GCNGC | 4 cut(s) | 498, 567, 672, 708 |
| FokI | GGATG | 3 cut(s) | 386, 529, 574 |
| FriOI | GRGCYC | 1 cut(s) | 260 |
| Fsp4HI | GCNGC | 4 cut(s) | 498, 567, 672, 708 |
| FspBI | CTAG | 1 cut(s) | 48 |
| GluI | GCNGC | 4 cut(s) | 498, 567, 672, 708 |
| HaeIII | GGCC | 1 cut(s) | 497 |
| HapII | CCGG | 1 cut(s) | 371 |
| Hin1II | CATG | 9 cut(s) | 65, 73, 143, 294, 316, 338, 358, 393, 465 |
| HindIII | AAGCTT | 1 cut(s) | 132 |
| HinfI | GANTC | 1 cut(s) | 321 |
| HpaII | CCGG | 1 cut(s) | 371 |
| HphI | GGTGA | 2 cut(s) | 100, 283 |
| Hpy166II | GTNNAC | 3 cut(s) | 7, 202, 274 |
| Hpy188I | TCNGA | 2 cut(s) | 246, 555 |
| Hpy188III | TCNNGA | 1 cut(s) | 400 |
| Hpy8I | GTNNAC | 3 cut(s) | 7, 202, 274 |
| HpyAV | CCTTC | 6 cut(s) | 226, 355, 487, 527, 696, 753 |
| HpyCH4V | TGCA | 8 cut(s) | 207, 212, 294, 300, 330, 674, 703, 710 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 30, 423, 632, 668, 677, 713 |
| HpyF3I | CTNAG | 4 cut(s) | 161, 237, 645, 747 |
| Hsp92II | CATG | 9 cut(s) | 65, 73, 143, 294, 316, 338, 358, 393, 465 |
| Kzo9I | GATC | 1 cut(s) | 432 |
| LpnPI | CCDG | 9 cut(s) | 19, 286, 303, 340, 384, 443, 449, 453, 681 |
| Lsp1109I | GCAGC | 3 cut(s) | 553, 658, 694 |
| LweI | GCATC | 2 cut(s) | 719, 761 |
| MaeI | CTAG | 1 cut(s) | 48 |
| MaeIII | GTNAC | 1 cut(s) | 64 |
| MalI | GATC | 1 cut(s) | 434 |
| MboI | GATC | 1 cut(s) | 432 |
| MboII | GAAGA | 9 cut(s) | 89, 112, 190, 274, 370, 415, 502, 526, 589 |
| MhlI | GDGCHC | 1 cut(s) | 260 |
| MmeI | TCCRAC | 2 cut(s) | 570, 763 |
| MseI | TTAA | 2 cut(s) | 83, 692 |
| MslI | CAYNNNNRTG | 1 cut(s) | 353 |
| MspA1I | CMGCKG | 1 cut(s) | 671 |
| MspI | CCGG | 1 cut(s) | 371 |
| MspR9I | CCNGG | 1 cut(s) | 371 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 30, 423, 632, 668, 677, 713 |
| NciI | CCSGG | 1 cut(s) | 371 |
| NcoI | CCATGG | 1 cut(s) | 139 |
| NdeII | GATC | 1 cut(s) | 432 |
| NlaIII | CATG | 9 cut(s) | 65, 73, 143, 294, 316, 338, 358, 393, 465 |
| NlaIV | GGNNCC | 1 cut(s) | 387 |
| NmuCI | GTSAC | 1 cut(s) | 64 |
| NspI | RCATGY | 3 cut(s) | 294, 338, 465 |
| PciI | ACATGT | 1 cut(s) | 461 |
| PfeI | GAWTC | 1 cut(s) | 321 |
| PfoI | TCCNGGA | 1 cut(s) | 369 |
| PkrI | GCNGC | 4 cut(s) | 499, 568, 673, 709 |
| PscI | ACATGT | 1 cut(s) | 461 |
| PspN4I | GGNNCC | 1 cut(s) | 387 |
| PvuII | CAGCTG | 1 cut(s) | 671 |
| RsaI | GTAC | 1 cut(s) | 541 |
| RsaNI | GTAC | 1 cut(s) | 540 |
| RseI | CAYNNNNRTG | 1 cut(s) | 353 |
| SaqAI | TTAA | 2 cut(s) | 83, 692 |
| SatI | GCNGC | 4 cut(s) | 498, 567, 672, 708 |
| Sau3AI | GATC | 1 cut(s) | 432 |
| ScrFI | CCNGG | 1 cut(s) | 371 |
| SduI | GDGCHC | 1 cut(s) | 260 |
| SfaNI | GCATC | 2 cut(s) | 719, 761 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 353 |
| SmlI | CTYRAG | 1 cut(s) | 398 |
| SmoI | CTYRAG | 1 cut(s) | 398 |
| SsiI | CCGC | 1 cut(s) | 498 |
| SspMI | CTAG | 1 cut(s) | 48 |
| StyD4I | CCNGG | 1 cut(s) | 369 |
| StyI | CCWWGG | 1 cut(s) | 139 |
| TaqI | TCGA | 2 cut(s) | 260, 584 |
| TauI | GCSGC | 1 cut(s) | 500 |
| TfiI | GAWTC | 1 cut(s) | 321 |
| Tru1I | TTAA | 2 cut(s) | 83, 692 |
| Tru9I | TTAA | 2 cut(s) | 83, 692 |
| TseFI | GTSAC | 1 cut(s) | 64 |
| TseI | GCWGC | 3 cut(s) | 566, 671, 707 |
| Tsp45I | GTSAC | 1 cut(s) | 64 |
| TspDTI | ATGAA | 4 cut(s) | 113, 371, 521, 590 |
| XceI | RCATGY | 3 cut(s) | 294, 338, 465 |
| XspI | CTAG | 1 cut(s) | 48 |