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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1060 |
| AciI | CCGC | 3 cut(s) | 32, 712, 1319 |
| AclWI | GGATC | 5 cut(s) | 170, 228, 1094, 1509, 1522 |
| AcsI | RAATTY | 2 cut(s) | 156, 1407 |
| AcuI | CTGAAG | 6 cut(s) | 36, 365, 825, 831, 897, 912 |
| AdeI | CACNNNGTG | 1 cut(s) | 688 |
| AfaI | GTAC | 3 cut(s) | 112, 122, 230 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 56, 439, 932, 1628, 1629, 1651 |
| AjnI | CCWGG | 4 cut(s) | 55, 526, 793, 1663 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 43, 75, 199, 231, 1370, 1402 |
| AleI | CACNNNNGTG | 1 cut(s) | 81 |
| AluBI | AGCT | 8 cut(s) | 334, 517, 809, 890, 896, 1013, 1304, 1495 |
| AluI | AGCT | 8 cut(s) | 334, 517, 809, 890, 896, 1013, 1304, 1495 |
| Alw26I | GTCTC | 1 cut(s) | 1066 |
| AlwI | GGATC | 5 cut(s) | 170, 228, 1094, 1509, 1522 |
| AoxI | GGCC | 4 cut(s) | 422, 524, 796, 1213 |
| ApeKI | GCWGC | 4 cut(s) | 467, 731, 1586, 1641 |
| ApoI | RAATTY | 2 cut(s) | 156, 1407 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1379 |
| AspA2I | CCTAGG | 1 cut(s) | 266 |
| AspS9I | GGNCC | 2 cut(s) | 430, 1214 |
| AsuHPI | GGTGA | 6 cut(s) | 863, 959, 986, 1274, 1564, 1652 |
| AvaII | GGWCC | 1 cut(s) | 430 |
| AvrII | CCTAGG | 1 cut(s) | 266 |
| BamHI | GGATCC | 1 cut(s) | 1514 |
| BbsI | GAAGAC | 3 cut(s) | 353, 358, 1179 |
| BbvCI | CCTCAGC | 2 cut(s) | 644, 1734 |
| BbvI | GCAGC | 4 cut(s) | 479, 718, 1573, 1628 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 296, 330 |
| BciT130I | CCWGG | 4 cut(s) | 57, 528, 795, 1665 |
| BcoDI | GTCTC | 1 cut(s) | 1066 |
| BfaI | CTAG | 7 cut(s) | 132, 164, 173, 267, 672, 1211, 1347 |
| BfuAI | ACCTGC | 1 cut(s) | 1060 |
| BglII | AGATCT | 1 cut(s) | 1207 |
| BisI | GCNGC | 5 cut(s) | 468, 713, 732, 1587, 1642 |
| BlnI | CCTAGG | 1 cut(s) | 266 |
| BlsI | GCNGC | 5 cut(s) | 469, 714, 733, 1588, 1643 |
| Bme1390I | CCNGG | 4 cut(s) | 57, 528, 795, 1665 |
| Bme18I | GGWCC | 1 cut(s) | 430 |
| BmgT120I | GGNCC | 2 cut(s) | 430, 1214 |
| BmiI | GGNNCC | 4 cut(s) | 7, 61, 432, 1516 |
| BmrFI | CCNGG | 4 cut(s) | 57, 528, 795, 1665 |
| BmsI | GCATC | 6 cut(s) | 90, 252, 282, 298, 304, 1684 |
| BpiI | GAAGAC | 3 cut(s) | 353, 358, 1179 |
| Bpu10I | CCTNAGC | 3 cut(s) | 644, 1305, 1734 |
| BpuEI | CTTGAG | 1 cut(s) | 341 |
| BsaBI | GATNNNNATC | 3 cut(s) | 27, 1098, 1206 |
| BsaJI | CCNNGG | 3 cut(s) | 79, 266, 1663 |
| BsaWI | WCCGGW | 1 cut(s) | 1485 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 546, 576 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 56, 439, 932, 1628, 1629, 1651 |
| Bse1I | ACTGG | 3 cut(s) | 379, 425, 495 |
| Bse3DI | GCAATG | 3 cut(s) | 210, 286, 501 |
| Bse8I | GATNNNNATC | 3 cut(s) | 27, 1098, 1206 |
| BseBI | CCWGG | 4 cut(s) | 57, 528, 795, 1665 |
| BseDI | CCNNGG | 3 cut(s) | 79, 266, 1663 |
| BseJI | GATNNNNATC | 3 cut(s) | 27, 1098, 1206 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 56, 439, 932, 1628, 1629, 1651 |
| BseMI | GCAATG | 3 cut(s) | 210, 286, 501 |
| BseMII | CTCAG | 5 cut(s) | 635, 888, 1005, 1524, 1725 |
| BseNI | ACTGG | 3 cut(s) | 379, 425, 495 |
| BseRI | GAGGAG | 7 cut(s) | 400, 403, 422, 661, 971, 1516, 1570 |
| BseXI | GCAGC | 4 cut(s) | 479, 718, 1573, 1628 |
| BseYI | CCCAGC | 1 cut(s) | 506 |
| BsgI | GTGCAG | 1 cut(s) | 1701 |
| BshFI | GGCC | 4 cut(s) | 424, 526, 798, 1215 |
| BsiSI | CCGG | 1 cut(s) | 1486 |
| BslFI | GGGAC | 1 cut(s) | 1461 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 56, 439, 932, 1628, 1629, 1651 |
| BsmAI | GTCTC | 1 cut(s) | 1066 |
| BsmFI | GGGAC | 1 cut(s) | 1461 |
| BsnI | GGCC | 4 cut(s) | 424, 526, 798, 1215 |
| Bsp143I | GATC | 6 cut(s) | 175, 220, 1099, 1207, 1459, 1514 |
| Bsp19I | CCATGG | 1 cut(s) | 79 |
| BspACI | CCGC | 3 cut(s) | 32, 712, 1319 |
| BspANI | GGCC | 4 cut(s) | 424, 526, 798, 1215 |
| BspCNI | CTCAG | 5 cut(s) | 636, 889, 1006, 1523, 1726 |
| BspLI | GGNNCC | 4 cut(s) | 7, 61, 432, 1516 |
| BspMI | ACCTGC | 1 cut(s) | 1060 |
| BspPI | GGATC | 5 cut(s) | 170, 228, 1094, 1509, 1522 |
| BsrDI | GCAATG | 3 cut(s) | 210, 286, 501 |
| BsrI | ACTGG | 3 cut(s) | 379, 425, 495 |
| BssECI | CCNNGG | 3 cut(s) | 79, 266, 1663 |
| BssMI | GATC | 6 cut(s) | 175, 220, 1099, 1207, 1459, 1514 |
| BssT1I | CCWWGG | 2 cut(s) | 79, 266 |
| Bst2UI | CCWGG | 4 cut(s) | 57, 528, 795, 1665 |
| Bst4CI | ACNGT | 3 cut(s) | 46, 688, 1522 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 503 |
| BstC8I | GCNNGC | 3 cut(s) | 729, 817, 1591 |
| BstDSI | CCRYGG | 1 cut(s) | 79 |
| BstKTI | GATC | 6 cut(s) | 178, 223, 1102, 1210, 1462, 1517 |
| BstMAI | GTCTC | 1 cut(s) | 1066 |
| BstMBI | GATC | 6 cut(s) | 175, 220, 1099, 1207, 1459, 1514 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 503, 523, 887, 1599 |
| BstNI | CCWGG | 4 cut(s) | 57, 528, 795, 1665 |
| BstSCI | CCNGG | 4 cut(s) | 55, 526, 793, 1663 |
| BstV1I | GCAGC | 4 cut(s) | 479, 718, 1573, 1628 |
| BstV2I | GAAGAC | 3 cut(s) | 353, 358, 1179 |
| BstX2I | RGATCY | 4 cut(s) | 175, 220, 1207, 1514 |
| BstYI | RGATCY | 4 cut(s) | 175, 220, 1207, 1514 |
| BsuRI | GGCC | 4 cut(s) | 424, 526, 798, 1215 |
| BtgI | CCRYGG | 1 cut(s) | 79 |
| BtsI | GCAGTG | 1 cut(s) | 1689 |
| BtsIMutI | CAGTG | 6 cut(s) | 12, 51, 341, 432, 1527, 1689 |
| BveI | ACCTGC | 1 cut(s) | 1060 |
| Cac8I | GCNNGC | 3 cut(s) | 729, 817, 1591 |
| Cfr13I | GGNCC | 2 cut(s) | 430, 1214 |
| Csp6I | GTAC | 3 cut(s) | 111, 121, 229 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 130, 165, 620, 655, 680, 715 |
| CviAII | CATG | 3 cut(s) | 80, 192, 1177 |
| CviQI | GTAC | 3 cut(s) | 111, 121, 229 |
| DpnI | GATC | 6 cut(s) | 177, 222, 1101, 1209, 1461, 1516 |
| DpnII | GATC | 6 cut(s) | 175, 220, 1099, 1207, 1459, 1514 |
| DraI | TTTAAA | 1 cut(s) | 453 |
| DraIII | CACNNNGTG | 1 cut(s) | 688 |
| EciI | GGCGGA | 1 cut(s) | 21 |
| Eco130I | CCWWGG | 2 cut(s) | 79, 266 |
| Eco147I | AGGCCT | 1 cut(s) | 526 |
| Eco47I | GGWCC | 1 cut(s) | 430 |
| Eco57I | CTGAAG | 6 cut(s) | 36, 365, 825, 831, 897, 912 |
| EcoRII | CCWGG | 4 cut(s) | 55, 526, 793, 1663 |
| EcoT14I | CCWWGG | 2 cut(s) | 79, 266 |
| ErhI | CCWWGG | 2 cut(s) | 79, 266 |
| FaeI | CATG | 3 cut(s) | 83, 195, 1180 |
| FaqI | GGGAC | 1 cut(s) | 1461 |
| FatI | CATG | 3 cut(s) | 79, 191, 1176 |
| Fnu4HI | GCNGC | 5 cut(s) | 468, 713, 732, 1587, 1642 |
| Fsp4HI | GCNGC | 5 cut(s) | 468, 713, 732, 1587, 1642 |
| FspBI | CTAG | 7 cut(s) | 132, 164, 173, 267, 672, 1211, 1347 |
| GluI | GCNGC | 5 cut(s) | 468, 713, 732, 1587, 1642 |
| GsaI | CCCAGC | 1 cut(s) | 510 |
| HaeIII | GGCC | 4 cut(s) | 424, 526, 798, 1215 |
| HapII | CCGG | 1 cut(s) | 1486 |
| Hin1II | CATG | 3 cut(s) | 83, 195, 1180 |
| HindIII | AAGCTT | 1 cut(s) | 332 |
| HinfI | GANTC | 7 cut(s) | 445, 746, 950, 977, 1040, 1237, 1357 |
| HpaII | CCGG | 1 cut(s) | 1486 |
| HphI | GGTGA | 6 cut(s) | 863, 959, 986, 1274, 1564, 1652 |
| Hpy166II | GTNNAC | 1 cut(s) | 430 |
| Hpy188I | TCNGA | 3 cut(s) | 751, 955, 1404 |
| Hpy188III | TCNNGA | 7 cut(s) | 63, 173, 179, 803, 1234, 1372, 1512 |
| Hpy8I | GTNNAC | 1 cut(s) | 430 |
| HpyCH4III | ACNGT | 3 cut(s) | 46, 688, 1522 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 503, 523, 887, 1599 |
| Hsp92II | CATG | 3 cut(s) | 83, 195, 1180 |
| Kzo9I | GATC | 6 cut(s) | 175, 220, 1099, 1207, 1459, 1514 |
| LmnI | GCTCC | 4 cut(s) | 5, 648, 1492, 1503 |
| Lsp1109I | GCAGC | 4 cut(s) | 479, 718, 1573, 1628 |
| LweI | GCATC | 6 cut(s) | 90, 252, 282, 298, 304, 1684 |
| MaeI | CTAG | 7 cut(s) | 132, 164, 173, 267, 672, 1211, 1347 |
| MaeIII | GTNAC | 3 cut(s) | 86, 601, 1481 |
| MalI | GATC | 6 cut(s) | 177, 222, 1101, 1209, 1461, 1516 |
| MboI | GATC | 6 cut(s) | 175, 220, 1099, 1207, 1459, 1514 |
| MfeI | CAATTG | 2 cut(s) | 1155, 1728 |
| MflI | RGATCY | 4 cut(s) | 175, 220, 1207, 1514 |
| MlyI | GAGTC | 1 cut(s) | 1231 |
| MmeI | TCCRAC | 2 cut(s) | 1175, 1614 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1379 |
| MseI | TTAA | 4 cut(s) | 452, 461, 558, 582 |
| MslI | CAYNNNNRTG | 1 cut(s) | 81 |
| MspI | CCGG | 1 cut(s) | 1486 |
| MspR9I | CCNGG | 4 cut(s) | 57, 528, 795, 1665 |
| MunI | CAATTG | 2 cut(s) | 1155, 1728 |
| MvaI | CCWGG | 4 cut(s) | 57, 528, 795, 1665 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 503, 523, 887, 1599 |
| NcoI | CCATGG | 1 cut(s) | 79 |
| NdeII | GATC | 6 cut(s) | 175, 220, 1099, 1207, 1459, 1514 |
| NlaIII | CATG | 3 cut(s) | 83, 195, 1180 |
| NlaIV | GGNNCC | 4 cut(s) | 7, 61, 432, 1516 |
| OliI | CACNNNNGTG | 1 cut(s) | 81 |
| PceI | AGGCCT | 1 cut(s) | 526 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1379 |
| PfeI | GAWTC | 6 cut(s) | 445, 746, 950, 977, 1040, 1357 |
| PkrI | GCNGC | 5 cut(s) | 469, 714, 733, 1588, 1643 |
| PleI | GAGTC | 1 cut(s) | 1231 |
| PpsI | GAGTC | 1 cut(s) | 1231 |
| Psp6I | CCWGG | 4 cut(s) | 55, 526, 793, 1663 |
| PspFI | CCCAGC | 1 cut(s) | 506 |
| PspGI | CCWGG | 4 cut(s) | 55, 526, 793, 1663 |
| PspN4I | GGNNCC | 4 cut(s) | 7, 61, 432, 1516 |
| PspPI | GGNCC | 2 cut(s) | 430, 1214 |
| PsuI | RGATCY | 4 cut(s) | 175, 220, 1207, 1514 |
| RsaI | GTAC | 3 cut(s) | 112, 122, 230 |
| RsaNI | GTAC | 3 cut(s) | 111, 121, 229 |
| RseI | CAYNNNNRTG | 1 cut(s) | 81 |
| SaqAI | TTAA | 4 cut(s) | 452, 461, 558, 582 |
| SatI | GCNGC | 5 cut(s) | 468, 713, 732, 1587, 1642 |
| Sau3AI | GATC | 6 cut(s) | 175, 220, 1099, 1207, 1459, 1514 |
| Sau96I | GGNCC | 2 cut(s) | 430, 1214 |
| SchI | GAGTC | 1 cut(s) | 1231 |
| ScrFI | CCNGG | 4 cut(s) | 57, 528, 795, 1665 |
| SfaNI | GCATC | 6 cut(s) | 90, 252, 282, 298, 304, 1684 |
| SinI | GGWCC | 1 cut(s) | 430 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 81 |
| SmlI | CTYRAG | 1 cut(s) | 320 |
| SmoI | CTYRAG | 1 cut(s) | 320 |
| SseBI | AGGCCT | 1 cut(s) | 526 |
| SsiI | CCGC | 3 cut(s) | 32, 712, 1319 |
| SspMI | CTAG | 7 cut(s) | 132, 164, 173, 267, 672, 1211, 1347 |
| StuI | AGGCCT | 1 cut(s) | 526 |
| StyD4I | CCNGG | 4 cut(s) | 55, 526, 793, 1663 |
| StyI | CCWWGG | 2 cut(s) | 79, 266 |
| TaaI | ACNGT | 3 cut(s) | 46, 688, 1522 |
| TaqII | GACCGA | 1 cut(s) | 1550 |
| TatI | WGTACW | 1 cut(s) | 120 |
| TauI | GCSGC | 1 cut(s) | 715 |
| TfiI | GAWTC | 6 cut(s) | 445, 746, 950, 977, 1040, 1357 |
| Tru1I | TTAA | 4 cut(s) | 452, 461, 558, 582 |
| Tru9I | TTAA | 4 cut(s) | 452, 461, 558, 582 |
| TscAI | CASTG | 6 cut(s) | 19, 51, 348, 432, 1527, 1689 |
| TseI | GCWGC | 4 cut(s) | 467, 731, 1586, 1641 |
| TspDTI | ATGAA | 8 cut(s) | 39, 237, 358, 1185, 1350, 1439, 1454, 1553 |
| TspRI | CASTG | 6 cut(s) | 19, 51, 348, 432, 1527, 1689 |
| VpaK11BI | GGWCC | 1 cut(s) | 430 |
| XapI | RAATTY | 2 cut(s) | 156, 1407 |
| XbaI | TCTAGA | 1 cut(s) | 172 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1630 |
| XmaJI | CCTAGG | 1 cut(s) | 266 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1379 |
| XspI | CTAG | 7 cut(s) | 132, 164, 173, 267, 672, 1211, 1347 |