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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 950, 1212 |
| Acc36I | ACCTGC | 2 cut(s) | 1435, 1684 |
| AccB1I | GGYRCC | 1 cut(s) | 1693 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1017 |
| AccI | GTMKAC | 1 cut(s) | 968 |
| AccII | CGCG | 2 cut(s) | 33, 185 |
| AciI | CCGC | 4 cut(s) | 169, 235, 486, 995 |
| AclWI | GGATC | 2 cut(s) | 308, 1782 |
| AcoI | YGGCCR | 1 cut(s) | 1362 |
| AcsI | RAATTY | 1 cut(s) | 986 |
| AcuI | CTGAAG | 1 cut(s) | 341 |
| AdeI | CACNNNGTG | 1 cut(s) | 60 |
| AfaI | GTAC | 3 cut(s) | 12, 605, 1201 |
| AfeI | AGCGCT | 1 cut(s) | 1146 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1017, 1097, 1762 |
| AflIII | ACRYGT | 1 cut(s) | 183 |
| AgsI | TTSAA | 7 cut(s) | 263, 346, 698, 712, 797, 914, 1744 |
| AjiI | CACGTC | 1 cut(s) | 464 |
| AjnI | CCWGG | 3 cut(s) | 621, 833, 1532 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 906, 938 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 582, 614 |
| AluBI | AGCT | 8 cut(s) | 128, 341, 530, 1000, 1023, 1260, 1750, 1780 |
| AluI | AGCT | 8 cut(s) | 128, 341, 530, 1000, 1023, 1260, 1750, 1780 |
| Alw26I | GTCTC | 1 cut(s) | 1471 |
| AlwI | GGATC | 2 cut(s) | 308, 1782 |
| Ama87I | CYCGRG | 1 cut(s) | 659 |
| Aor51HI | AGCGCT | 1 cut(s) | 1146 |
| AoxI | GGCC | 5 cut(s) | 303, 662, 827, 1110, 1362 |
| ApeKI | GCWGC | 3 cut(s) | 232, 530, 629 |
| ApoI | RAATTY | 1 cut(s) | 986 |
| AseI | ATTAAT | 1 cut(s) | 159 |
| AspLEI | GCGC | 2 cut(s) | 1055, 1147 |
| AspS9I | GGNCC | 3 cut(s) | 304, 662, 1033 |
| AsuHPI | GGTGA | 9 cut(s) | 29, 46, 463, 580, 938, 1201, 1633, 1637, 1777 |
| AvaI | CYCGRG | 1 cut(s) | 659 |
| AvaII | GGWCC | 1 cut(s) | 1033 |
| AxyI | CCTNAGG | 1 cut(s) | 1592 |
| BalI | TGGCCA | 1 cut(s) | 1364 |
| BanI | GGYRCC | 1 cut(s) | 1693 |
| BbsI | GAAGAC | 1 cut(s) | 347 |
| BbvI | GCAGC | 3 cut(s) | 244, 517, 616 |
| BccI | CCATC | 5 cut(s) | 14, 434, 1373, 1507, 1555 |
| BciT130I | CCWGG | 3 cut(s) | 623, 835, 1534 |
| BclI | TGATCA | 1 cut(s) | 1240 |
| BcoDI | GTCTC | 1 cut(s) | 1471 |
| BfaI | CTAG | 9 cut(s) | 6, 210, 596, 768, 974, 1134, 1700, 1758, 1783 |
| BfoI | RGCGCY | 2 cut(s) | 1056, 1148 |
| BfuAI | ACCTGC | 2 cut(s) | 1435, 1684 |
| BisI | GCNGC | 3 cut(s) | 233, 531, 630 |
| BlsI | GCNGC | 3 cut(s) | 234, 532, 631 |
| BmcAI | AGTACT | 1 cut(s) | 1201 |
| Bme1390I | CCNGG | 3 cut(s) | 623, 835, 1534 |
| Bme18I | GGWCC | 1 cut(s) | 1033 |
| BmeT110I | CYCGRG | 1 cut(s) | 659 |
| BmgBI | CACGTC | 1 cut(s) | 464 |
| BmgT120I | GGNCC | 3 cut(s) | 304, 662, 1033 |
| BmiI | GGNNCC | 4 cut(s) | 306, 704, 1589, 1695 |
| BmrFI | CCNGG | 3 cut(s) | 623, 835, 1534 |
| BmrI | ACTGGG | 1 cut(s) | 457 |
| BmsI | GCATC | 5 cut(s) | 180, 616, 630, 1398, 1507 |
| BmuI | ACTGGG | 1 cut(s) | 457 |
| BpiI | GAAGAC | 1 cut(s) | 347 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1248 |
| BpuEI | CTTGAG | 1 cut(s) | 108 |
| Bsa29I | ATCGAT | 1 cut(s) | 898 |
| BsaJI | CCNNGG | 3 cut(s) | 658, 834, 1533 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 398, 428 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1017, 1097, 1762 |
| Bse1I | ACTGG | 3 cut(s) | 133, 452, 1589 |
| Bse21I | CCTNAGG | 1 cut(s) | 1592 |
| Bse3DI | GCAATG | 2 cut(s) | 540, 1398 |
| BseBI | CCWGG | 3 cut(s) | 623, 835, 1534 |
| BseCI | ATCGAT | 1 cut(s) | 898 |
| BseDI | CCNNGG | 3 cut(s) | 658, 834, 1533 |
| BseGI | GGATG | 3 cut(s) | 631, 1518, 1522 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1017, 1097, 1762 |
| BseMI | GCAATG | 2 cut(s) | 540, 1398 |
| BseMII | CTCAG | 5 cut(s) | 156, 716, 1108, 1262, 1583 |
| BseNI | ACTGG | 3 cut(s) | 133, 452, 1589 |
| BseRI | GAGGAG | 4 cut(s) | 499, 821, 902, 1113 |
| BseXI | GCAGC | 3 cut(s) | 244, 517, 616 |
| BseYI | CCCAGC | 2 cut(s) | 79, 1023 |
| BsgI | GTGCAG | 1 cut(s) | 1463 |
| Bsh1236I | CGCG | 2 cut(s) | 33, 185 |
| BshFI | GGCC | 5 cut(s) | 305, 664, 829, 1112, 1364 |
| BshNI | GGYRCC | 1 cut(s) | 1693 |
| BshVI | ATCGAT | 1 cut(s) | 898 |
| BsiHKCI | CYCGRG | 1 cut(s) | 659 |
| BslFI | GGGAC | 2 cut(s) | 584, 1595 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1017, 1097, 1762 |
| BsmAI | GTCTC | 1 cut(s) | 1471 |
| BsmFI | GGGAC | 2 cut(s) | 584, 1595 |
| BsnI | GGCC | 5 cut(s) | 305, 664, 829, 1112, 1364 |
| BsoBI | CYCGRG | 1 cut(s) | 659 |
| Bsp143I | GATC | 8 cut(s) | 193, 313, 398, 899, 1240, 1617, 1705, 1774 |
| Bsp68I | TCGCGA | 1 cut(s) | 33 |
| BspACI | CCGC | 4 cut(s) | 169, 235, 486, 995 |
| BspANI | GGCC | 5 cut(s) | 305, 664, 829, 1112, 1364 |
| BspCNI | CTCAG | 5 cut(s) | 155, 717, 1107, 1261, 1584 |
| BspDI | ATCGAT | 1 cut(s) | 898 |
| BspFNI | CGCG | 2 cut(s) | 33, 185 |
| BspHI | TCATGA | 1 cut(s) | 174 |
| BspLI | GGNNCC | 4 cut(s) | 306, 704, 1589, 1695 |
| BspMI | ACCTGC | 2 cut(s) | 1435, 1684 |
| BspPI | GGATC | 2 cut(s) | 308, 1782 |
| BspT107I | GGYRCC | 1 cut(s) | 1693 |
| BsrDI | GCAATG | 2 cut(s) | 540, 1398 |
| BsrI | ACTGG | 3 cut(s) | 133, 452, 1589 |
| BssECI | CCNNGG | 3 cut(s) | 658, 834, 1533 |
| BssMI | GATC | 8 cut(s) | 193, 313, 398, 899, 1240, 1617, 1705, 1774 |
| BssNAI | GTATAC | 1 cut(s) | 969 |
| Bst1107I | GTATAC | 1 cut(s) | 969 |
| Bst2UI | CCWGG | 3 cut(s) | 623, 835, 1534 |
| Bst4CI | ACNGT | 6 cut(s) | 58, 785, 932, 1336, 1416, 1507 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 196 |
| BstC8I | GCNNGC | 5 cut(s) | 96, 270, 303, 339, 1262 |
| BstDEI | CTNAG | 7 cut(s) | 142, 725, 1094, 1196, 1248, 1481, 1592 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1095 |
| BstF5I | GGATG | 3 cut(s) | 631, 1518, 1522 |
| BstFNI | CGCG | 2 cut(s) | 33, 185 |
| BstH2I | RGCGCY | 2 cut(s) | 1056, 1148 |
| BstHHI | GCGC | 2 cut(s) | 1055, 1147 |
| BstKTI | GATC | 8 cut(s) | 196, 316, 401, 902, 1243, 1620, 1708, 1777 |
| BstMAI | GTCTC | 1 cut(s) | 1471 |
| BstMBI | GATC | 8 cut(s) | 193, 313, 398, 899, 1240, 1617, 1705, 1774 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 196, 278, 1151 |
| BstNI | CCWGG | 3 cut(s) | 623, 835, 1534 |
| BstNSI | RCATGY | 4 cut(s) | 285, 505, 1471, 1683 |
| BstSCI | CCNGG | 3 cut(s) | 621, 833, 1532 |
| BstUI | CGCG | 2 cut(s) | 33, 185 |
| BstV1I | GCAGC | 3 cut(s) | 244, 517, 616 |
| BstV2I | GAAGAC | 1 cut(s) | 347 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1049 |
| BstZ17I | GTATAC | 1 cut(s) | 969 |
| Bsu15I | ATCGAT | 1 cut(s) | 898 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1592 |
| BsuRI | GGCC | 5 cut(s) | 305, 664, 829, 1112, 1364 |
| BsuTUI | ATCGAT | 1 cut(s) | 898 |
| BtrI | CACGTC | 1 cut(s) | 464 |
| BtsCI | GGATG | 3 cut(s) | 631, 1518, 1522 |
| BtsIMutI | CAGTG | 2 cut(s) | 606, 1512 |
| BtuMI | TCGCGA | 1 cut(s) | 33 |
| BveI | ACCTGC | 2 cut(s) | 1435, 1684 |
| Cac8I | GCNNGC | 5 cut(s) | 96, 270, 303, 339, 1262 |
| CciI | TCATGA | 1 cut(s) | 174 |
| CfoI | GCGC | 2 cut(s) | 1055, 1147 |
| Cfr13I | GGNCC | 3 cut(s) | 304, 662, 1033 |
| ClaI | ATCGAT | 1 cut(s) | 898 |
| CseI | GACGC | 1 cut(s) | 191 |
| Csp6I | GTAC | 3 cut(s) | 11, 604, 1200 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1518, 1553 |
| CviQI | GTAC | 3 cut(s) | 11, 604, 1200 |
| DdeI | CTNAG | 7 cut(s) | 142, 725, 1094, 1196, 1248, 1481, 1592 |
| DpnI | GATC | 8 cut(s) | 195, 315, 400, 901, 1242, 1619, 1707, 1776 |
| DpnII | GATC | 8 cut(s) | 193, 313, 398, 899, 1240, 1617, 1705, 1774 |
| DraI | TTTAAA | 1 cut(s) | 288 |
| DraIII | CACNNNGTG | 1 cut(s) | 60 |
| EaeI | YGGCCR | 1 cut(s) | 1362 |
| Eco47I | GGWCC | 1 cut(s) | 1033 |
| Eco47III | AGCGCT | 1 cut(s) | 1146 |
| Eco57I | CTGAAG | 1 cut(s) | 341 |
| Eco81I | CCTNAGG | 1 cut(s) | 1592 |
| Eco88I | CYCGRG | 1 cut(s) | 659 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1095 |
| EcoO109I | RGGNCCY | 1 cut(s) | 304 |
| EcoRII | CCWGG | 3 cut(s) | 621, 833, 1532 |
| EcoT22I | ATGCAT | 1 cut(s) | 1156 |
| FaqI | GGGAC | 2 cut(s) | 584, 1595 |
| FauI | CCCGC | 1 cut(s) | 479 |
| FauNDI | CATATG | 3 cut(s) | 201, 1115, 1285 |
| FbaI | TGATCA | 1 cut(s) | 1240 |
| FblI | GTMKAC | 1 cut(s) | 968 |
| Fnu4HI | GCNGC | 3 cut(s) | 233, 531, 630 |
| FokI | GGATG | 3 cut(s) | 638, 1525, 1529 |
| Fsp4HI | GCNGC | 3 cut(s) | 233, 531, 630 |
| FspBI | CTAG | 9 cut(s) | 6, 210, 596, 768, 974, 1134, 1700, 1758, 1783 |
| GlaI | GCGC | 2 cut(s) | 1054, 1146 |
| GluI | GCNGC | 3 cut(s) | 233, 531, 630 |
| GsaI | CCCAGC | 2 cut(s) | 83, 1027 |
| HaeII | RGCGCY | 2 cut(s) | 1056, 1148 |
| HaeIII | GGCC | 5 cut(s) | 305, 664, 829, 1112, 1364 |
| HgaI | GACGC | 1 cut(s) | 191 |
| HhaI | GCGC | 2 cut(s) | 1055, 1147 |
| Hin6I | GCGC | 2 cut(s) | 1053, 1145 |
| HinP1I | GCGC | 2 cut(s) | 1053, 1145 |
| HincII | GTYRAC | 3 cut(s) | 369, 395, 1503 |
| HindII | GTYRAC | 3 cut(s) | 369, 395, 1503 |
| HindIII | AAGCTT | 1 cut(s) | 339 |
| HphI | GGTGA | 9 cut(s) | 29, 46, 463, 580, 938, 1201, 1633, 1637, 1777 |
| Hpy166II | GTNNAC | 7 cut(s) | 369, 395, 428, 606, 969, 1503, 1734 |
| Hpy188I | TCNGA | 9 cut(s) | 468, 543, 639, 726, 777, 844, 1097, 1476, 1654 |
| Hpy188III | TCNNGA | 9 cut(s) | 32, 71, 164, 175, 359, 587, 1250, 1349, 1591 |
| Hpy8I | GTNNAC | 7 cut(s) | 369, 395, 428, 606, 969, 1503, 1734 |
| HpyAV | CCTTC | 7 cut(s) | 172, 469, 1046, 1102, 1622, 1654, 1765 |
| HpyCH4III | ACNGT | 6 cut(s) | 58, 785, 932, 1336, 1416, 1507 |
| HpyCH4IV | ACGT | 2 cut(s) | 463, 1440 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 196, 278, 1151 |
| HpyF3I | CTNAG | 7 cut(s) | 142, 725, 1094, 1196, 1248, 1481, 1592 |
| HpySE526I | ACGT | 2 cut(s) | 463, 1440 |
| HspAI | GCGC | 2 cut(s) | 1053, 1145 |
| Ksp22I | TGATCA | 1 cut(s) | 1240 |
| Kzo9I | GATC | 8 cut(s) | 193, 313, 398, 899, 1240, 1617, 1705, 1774 |
| LmnI | GCTCC | 3 cut(s) | 997, 1020, 1452 |
| Lsp1109I | GCAGC | 3 cut(s) | 244, 517, 616 |
| LweI | GCATC | 5 cut(s) | 180, 616, 630, 1398, 1507 |
| MaeI | CTAG | 9 cut(s) | 6, 210, 596, 768, 974, 1134, 1700, 1758, 1783 |
| MaeII | ACGT | 2 cut(s) | 463, 1440 |
| MaeIII | GTNAC | 5 cut(s) | 451, 568, 926, 1169, 1336 |
| MalI | GATC | 8 cut(s) | 195, 315, 400, 901, 1242, 1619, 1707, 1776 |
| MboI | GATC | 8 cut(s) | 193, 313, 398, 899, 1240, 1617, 1705, 1774 |
| MboII | GAAGA | 6 cut(s) | 347, 389, 449, 1265, 1441, 1697 |
| MlsI | TGGCCA | 1 cut(s) | 1364 |
| MluI | ACGCGT | 1 cut(s) | 183 |
| MluNI | TGGCCA | 1 cut(s) | 1364 |
| MlyI | GAGTC | 4 cut(s) | 53, 109, 134, 400 |
| Mox20I | TGGCCA | 1 cut(s) | 1364 |
| Mph1103I | ATGCAT | 1 cut(s) | 1156 |
| MscI | TGGCCA | 1 cut(s) | 1364 |
| MseI | TTAA | 4 cut(s) | 159, 287, 416, 1605 |
| Msp20I | TGGCCA | 1 cut(s) | 1364 |
| MspA1I | CMGCKG | 1 cut(s) | 235 |
| MspR9I | CCNGG | 3 cut(s) | 623, 835, 1534 |
| MvaI | CCWGG | 3 cut(s) | 623, 835, 1534 |
| MvnI | CGCG | 2 cut(s) | 33, 185 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 196, 278, 1151 |
| NdeI | CATATG | 3 cut(s) | 201, 1115, 1285 |
| NdeII | GATC | 8 cut(s) | 193, 313, 398, 899, 1240, 1617, 1705, 1774 |
| NlaIV | GGNNCC | 4 cut(s) | 306, 704, 1589, 1695 |
| NmuCI | GTSAC | 3 cut(s) | 451, 568, 926 |
| NruI | TCGCGA | 1 cut(s) | 33 |
| NsiI | ATGCAT | 1 cut(s) | 1156 |
| NspI | RCATGY | 4 cut(s) | 285, 505, 1471, 1683 |
| PagI | TCATGA | 1 cut(s) | 174 |
| PfeI | GAWTC | 8 cut(s) | 538, 544, 583, 839, 852, 957, 1192, 1574 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1017 |
| PfoI | TCCNGGA | 1 cut(s) | 621 |
| PkrI | GCNGC | 3 cut(s) | 234, 532, 631 |
| PleI | GAGTC | 4 cut(s) | 52, 109, 134, 399 |
| PpsI | GAGTC | 4 cut(s) | 52, 109, 134, 399 |
| PshBI | ATTAAT | 1 cut(s) | 159 |
| PsiI | TTATAA | 2 cut(s) | 950, 1212 |
| Psp6I | CCWGG | 3 cut(s) | 621, 833, 1532 |
| PspFI | CCCAGC | 2 cut(s) | 79, 1023 |
| PspGI | CCWGG | 3 cut(s) | 621, 833, 1532 |
| PspN4I | GGNNCC | 4 cut(s) | 306, 704, 1589, 1695 |
| PspPI | GGNCC | 3 cut(s) | 304, 662, 1033 |
| RruI | TCGCGA | 1 cut(s) | 33 |
| RsaI | GTAC | 3 cut(s) | 12, 605, 1201 |
| RsaNI | GTAC | 3 cut(s) | 11, 604, 1200 |
| SaqAI | TTAA | 4 cut(s) | 159, 287, 416, 1605 |
| SatI | GCNGC | 3 cut(s) | 233, 531, 630 |
| Sau3AI | GATC | 8 cut(s) | 193, 313, 398, 899, 1240, 1617, 1705, 1774 |
| Sau96I | GGNCC | 3 cut(s) | 304, 662, 1033 |
| ScaI | AGTACT | 1 cut(s) | 1201 |
| SchI | GAGTC | 4 cut(s) | 53, 109, 134, 400 |
| ScrFI | CCNGG | 3 cut(s) | 623, 835, 1534 |
| SfaNI | GCATC | 5 cut(s) | 180, 616, 630, 1398, 1507 |
| SinI | GGWCC | 1 cut(s) | 1033 |
| SmlI | CTYRAG | 1 cut(s) | 123 |
| SmoI | CTYRAG | 1 cut(s) | 123 |
| SsiI | CCGC | 4 cut(s) | 169, 235, 486, 995 |
| SspMI | CTAG | 9 cut(s) | 6, 210, 596, 768, 974, 1134, 1700, 1758, 1783 |
| StyD4I | CCNGG | 3 cut(s) | 621, 833, 1532 |
| TaaI | ACNGT | 6 cut(s) | 58, 785, 932, 1336, 1416, 1507 |
| TaiI | ACGT | 2 cut(s) | 466, 1443 |
| TaqI | TCGA | 3 cut(s) | 496, 898, 1005 |
| TatI | WGTACW | 1 cut(s) | 1199 |
| TfiI | GAWTC | 8 cut(s) | 538, 544, 583, 839, 852, 957, 1192, 1574 |
| Tru1I | TTAA | 4 cut(s) | 159, 287, 416, 1605 |
| Tru9I | TTAA | 4 cut(s) | 159, 287, 416, 1605 |
| TscAI | CASTG | 2 cut(s) | 613, 1512 |
| TseFI | GTSAC | 3 cut(s) | 451, 568, 926 |
| TseI | GCWGC | 3 cut(s) | 232, 530, 629 |
| Tsp45I | GTSAC | 3 cut(s) | 451, 568, 926 |
| TspGWI | ACGGA | 1 cut(s) | 1482 |
| TspRI | CASTG | 2 cut(s) | 613, 1512 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1017 |
| VpaK11BI | GGWCC | 1 cut(s) | 1033 |
| VspI | ATTAAT | 1 cut(s) | 159 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1095 |
| XapI | RAATTY | 1 cut(s) | 986 |
| XceI | RCATGY | 4 cut(s) | 285, 505, 1471, 1683 |
| XmiI | GTMKAC | 1 cut(s) | 968 |
| XspI | CTAG | 9 cut(s) | 6, 210, 596, 768, 974, 1134, 1700, 1758, 1783 |
| ZrmI | AGTACT | 1 cut(s) | 1201 |
| Zsp2I | ATGCAT | 1 cut(s) | 1156 |