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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 908, 1043 |
| AccBSI | CCGCTC | 1 cut(s) | 1009 |
| AccI | GTMKAC | 1 cut(s) | 1103 |
| AccII | CGCG | 1 cut(s) | 960 |
| AciI | CCGC | 5 cut(s) | 126, 960, 997, 1009, 1032 |
| AclWI | GGATC | 3 cut(s) | 439, 452, 732 |
| AcoI | YGGCCR | 1 cut(s) | 922 |
| AcuI | CTGAAG | 2 cut(s) | 732, 1173 |
| AfaI | GTAC | 4 cut(s) | 381, 839, 993, 1081 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 501, 785, 996 |
| AgsI | TTSAA | 8 cut(s) | 253, 346, 367, 416, 578, 620, 739, 932 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1110, 1165 |
| AjnI | CCWGG | 1 cut(s) | 850 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 807, 839 |
| AluBI | AGCT | 8 cut(s) | 113, 326, 363, 408, 433, 526, 1092, 1216 |
| AluI | AGCT | 8 cut(s) | 113, 326, 363, 408, 433, 526, 1092, 1216 |
| Alw21I | GWGCWC | 1 cut(s) | 175 |
| Alw26I | GTCTC | 2 cut(s) | 694, 850 |
| AlwI | GGATC | 3 cut(s) | 439, 452, 732 |
| AoxI | GGCC | 2 cut(s) | 566, 922 |
| ApeKI | GCWGC | 5 cut(s) | 326, 533, 597, 948, 951 |
| AspA2I | CCTAGG | 1 cut(s) | 500 |
| AspLEI | GCGC | 1 cut(s) | 960 |
| AspS9I | GGNCC | 3 cut(s) | 123, 566, 1029 |
| AsuHPI | GGTGA | 3 cut(s) | 77, 158, 622 |
| AvaII | GGWCC | 2 cut(s) | 123, 1029 |
| AvrII | CCTAGG | 1 cut(s) | 500 |
| BamHI | GGATCC | 1 cut(s) | 444 |
| BanI | GGYRCC | 2 cut(s) | 908, 1043 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 731, 763 |
| BbsI | GAAGAC | 2 cut(s) | 749, 980 |
| Bbv12I | GWGCWC | 1 cut(s) | 175 |
| BbvI | GCAGC | 5 cut(s) | 313, 520, 609, 935, 938 |
| BccI | CCATC | 6 cut(s) | 137, 212, 230, 639, 920, 938 |
| BceAI | ACGGC | 1 cut(s) | 1080 |
| BciT130I | CCWGG | 1 cut(s) | 852 |
| BciVI | GTATCC | 1 cut(s) | 1177 |
| BcoDI | GTCTC | 2 cut(s) | 694, 850 |
| BfaI | CTAG | 2 cut(s) | 501, 657 |
| BfmI | CTRYAG | 1 cut(s) | 132 |
| BfuI | GTATCC | 1 cut(s) | 1177 |
| BisI | GCNGC | 6 cut(s) | 327, 534, 598, 949, 952, 998 |
| BlnI | CCTAGG | 1 cut(s) | 500 |
| BlsI | GCNGC | 6 cut(s) | 328, 535, 599, 950, 953, 999 |
| Bme1390I | CCNGG | 1 cut(s) | 852 |
| Bme18I | GGWCC | 2 cut(s) | 123, 1029 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1110, 1165 |
| BmgT120I | GGNCC | 3 cut(s) | 123, 566, 1029 |
| BmiI | GGNNCC | 5 cut(s) | 124, 242, 446, 910, 1045 |
| BmrFI | CCNGG | 1 cut(s) | 852 |
| BmsI | GCATC | 2 cut(s) | 669, 871 |
| BpiI | GAAGAC | 2 cut(s) | 749, 980 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1039 |
| BpuEI | CTTGAG | 2 cut(s) | 512, 986 |
| Bsa29I | ATCGAT | 1 cut(s) | 942 |
| BsaI | GGTCTC | 1 cut(s) | 850 |
| BsaJI | CCNNGG | 3 cut(s) | 500, 851, 860 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 971, 1001 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 501, 785, 996 |
| Bse1I | ACTGG | 1 cut(s) | 559 |
| Bse3DI | GCAATG | 2 cut(s) | 28, 168 |
| BseBI | CCWGG | 1 cut(s) | 852 |
| BseCI | ATCGAT | 1 cut(s) | 942 |
| BseDI | CCNNGG | 3 cut(s) | 500, 851, 860 |
| BseGI | GGATG | 5 cut(s) | 55, 79, 336, 660, 886 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 501, 785, 996 |
| BseMI | GCAATG | 2 cut(s) | 28, 168 |
| BseMII | CTCAG | 3 cut(s) | 237, 1053, 1109 |
| BseNI | ACTGG | 1 cut(s) | 559 |
| BseRI | GAGGAG | 4 cut(s) | 123, 203, 454, 469 |
| BseXI | GCAGC | 5 cut(s) | 313, 520, 609, 935, 938 |
| BsgI | GTGCAG | 1 cut(s) | 831 |
| Bsh1236I | CGCG | 1 cut(s) | 960 |
| BshFI | GGCC | 2 cut(s) | 568, 924 |
| BshNI | GGYRCC | 2 cut(s) | 908, 1043 |
| BshVI | ATCGAT | 1 cut(s) | 942 |
| BsiHKAI | GWGCWC | 1 cut(s) | 175 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 501, 785, 996 |
| BsmAI | GTCTC | 2 cut(s) | 694, 850 |
| BsmI | GAATGC | 1 cut(s) | 371 |
| BsnI | GGCC | 2 cut(s) | 568, 924 |
| Bso31I | GGTCTC | 1 cut(s) | 850 |
| Bsp1286I | GDGCHC | 1 cut(s) | 175 |
| Bsp143I | GATC | 3 cut(s) | 444, 724, 873 |
| BspACI | CCGC | 5 cut(s) | 126, 960, 997, 1009, 1032 |
| BspANI | GGCC | 2 cut(s) | 568, 924 |
| BspCNI | CTCAG | 3 cut(s) | 238, 1052, 1110 |
| BspDI | ATCGAT | 1 cut(s) | 942 |
| BspFNI | CGCG | 1 cut(s) | 960 |
| BspLI | GGNNCC | 5 cut(s) | 124, 242, 446, 910, 1045 |
| BspMAI | CTGCAG | 1 cut(s) | 136 |
| BspPI | GGATC | 3 cut(s) | 439, 452, 732 |
| BspT107I | GGYRCC | 2 cut(s) | 908, 1043 |
| BspTNI | GGTCTC | 1 cut(s) | 850 |
| BsrBI | CCGCTC | 1 cut(s) | 1009 |
| BsrDI | GCAATG | 2 cut(s) | 28, 168 |
| BsrI | ACTGG | 1 cut(s) | 559 |
| BssECI | CCNNGG | 3 cut(s) | 500, 851, 860 |
| BssMI | GATC | 3 cut(s) | 444, 724, 873 |
| BssT1I | CCWWGG | 2 cut(s) | 500, 860 |
| Bst2UI | CCWGG | 1 cut(s) | 852 |
| Bst4CI | ACNGT | 1 cut(s) | 837 |
| Bst6I | CTCTTC | 2 cut(s) | 708, 1091 |
| BstC8I | GCNNGC | 4 cut(s) | 586, 637, 956, 1036 |
| BstDEI | CTNAG | 4 cut(s) | 246, 804, 1039, 1118 |
| BstF5I | GGATG | 5 cut(s) | 55, 79, 336, 660, 886 |
| BstFNI | CGCG | 1 cut(s) | 960 |
| BstHHI | GCGC | 1 cut(s) | 960 |
| BstKTI | GATC | 3 cut(s) | 447, 727, 876 |
| BstMAI | GTCTC | 2 cut(s) | 694, 850 |
| BstMBI | GATC | 3 cut(s) | 444, 724, 873 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 594, 683, 957, 1006, 1222 |
| BstNI | CCWGG | 1 cut(s) | 852 |
| BstNSI | RCATGY | 3 cut(s) | 333, 639, 677 |
| BstSCI | CCNGG | 1 cut(s) | 850 |
| BstSFI | CTRYAG | 1 cut(s) | 132 |
| BstUI | CGCG | 1 cut(s) | 960 |
| BstV1I | GCAGC | 5 cut(s) | 313, 520, 609, 935, 938 |
| BstV2I | GAAGAC | 2 cut(s) | 749, 980 |
| BstX2I | RGATCY | 1 cut(s) | 444 |
| BstYI | RGATCY | 1 cut(s) | 444 |
| Bsu15I | ATCGAT | 1 cut(s) | 942 |
| BsuI | GTATCC | 1 cut(s) | 1177 |
| BsuRI | GGCC | 2 cut(s) | 568, 924 |
| BsuTUI | ATCGAT | 1 cut(s) | 942 |
| BtsCI | GGATG | 5 cut(s) | 55, 79, 336, 660, 886 |
| BtsIMutI | CAGTG | 2 cut(s) | 734, 1115 |
| Cac8I | GCNNGC | 4 cut(s) | 586, 637, 956, 1036 |
| CfoI | GCGC | 1 cut(s) | 960 |
| Cfr13I | GGNCC | 3 cut(s) | 123, 566, 1029 |
| ClaI | ATCGAT | 1 cut(s) | 942 |
| Csp6I | GTAC | 4 cut(s) | 380, 838, 992, 1080 |
| CviAII | CATG | 7 cut(s) | 70, 330, 449, 476, 636, 674, 751 |
| CviQI | GTAC | 4 cut(s) | 380, 838, 992, 1080 |
| DdeI | CTNAG | 4 cut(s) | 246, 804, 1039, 1118 |
| DpnI | GATC | 3 cut(s) | 446, 726, 875 |
| DpnII | GATC | 3 cut(s) | 444, 724, 873 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1110, 1165 |
| EaeI | YGGCCR | 1 cut(s) | 922 |
| Eam1104I | CTCTTC | 2 cut(s) | 708, 1091 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1110, 1165 |
| EarI | CTCTTC | 2 cut(s) | 708, 1091 |
| Eco130I | CCWWGG | 2 cut(s) | 500, 860 |
| Eco31I | GGTCTC | 1 cut(s) | 850 |
| Eco47I | GGWCC | 2 cut(s) | 123, 1029 |
| Eco57I | CTGAAG | 2 cut(s) | 732, 1173 |
| EcoRII | CCWGG | 1 cut(s) | 850 |
| EcoT14I | CCWWGG | 2 cut(s) | 500, 860 |
| EcoT22I | ATGCAT | 3 cut(s) | 273, 373, 886 |
| ErhI | CCWWGG | 2 cut(s) | 500, 860 |
| FaeI | CATG | 7 cut(s) | 73, 333, 452, 479, 639, 677, 754 |
| FatI | CATG | 7 cut(s) | 69, 329, 448, 475, 635, 673, 750 |
| FauNDI | CATATG | 1 cut(s) | 886 |
| FblI | GTMKAC | 1 cut(s) | 1103 |
| Fnu4HI | GCNGC | 6 cut(s) | 327, 534, 598, 949, 952, 998 |
| FokI | GGATG | 5 cut(s) | 62, 86, 323, 647, 893 |
| Fsp4HI | GCNGC | 6 cut(s) | 327, 534, 598, 949, 952, 998 |
| FspBI | CTAG | 2 cut(s) | 501, 657 |
| GlaI | GCGC | 1 cut(s) | 959 |
| GluI | GCNGC | 6 cut(s) | 327, 534, 598, 949, 952, 998 |
| HaeIII | GGCC | 2 cut(s) | 568, 924 |
| HhaI | GCGC | 1 cut(s) | 960 |
| Hin1II | CATG | 7 cut(s) | 73, 333, 452, 479, 639, 677, 754 |
| Hin6I | GCGC | 1 cut(s) | 958 |
| HinP1I | GCGC | 1 cut(s) | 958 |
| HincII | GTYRAC | 1 cut(s) | 1104 |
| HindII | GTYRAC | 1 cut(s) | 1104 |
| HinfI | GANTC | 5 cut(s) | 7, 179, 1019, 1111, 1166 |
| HphI | GGTGA | 3 cut(s) | 77, 158, 622 |
| Hpy166II | GTNNAC | 6 cut(s) | 613, 671, 840, 1029, 1104, 1115 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 217, 358 |
| Hpy188III | TCNNGA | 1 cut(s) | 343 |
| Hpy8I | GTNNAC | 6 cut(s) | 613, 671, 840, 1029, 1104, 1115 |
| HpyAV | CCTTC | 2 cut(s) | 836, 886 |
| HpyCH4III | ACNGT | 1 cut(s) | 837 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 594, 683, 957, 1006, 1222 |
| HpyF3I | CTNAG | 4 cut(s) | 246, 804, 1039, 1118 |
| Hsp92II | CATG | 7 cut(s) | 73, 333, 452, 479, 639, 677, 754 |
| HspAI | GCGC | 1 cut(s) | 958 |
| Kzo9I | GATC | 3 cut(s) | 444, 724, 873 |
| LmnI | GCTCC | 3 cut(s) | 110, 170, 1006 |
| Lsp1109I | GCAGC | 5 cut(s) | 313, 520, 609, 935, 938 |
| LweI | GCATC | 2 cut(s) | 669, 871 |
| MaeI | CTAG | 2 cut(s) | 501, 657 |
| MaeIII | GTNAC | 3 cut(s) | 65, 332, 1157 |
| MalI | GATC | 3 cut(s) | 446, 726, 875 |
| MbiI | CCGCTC | 1 cut(s) | 1009 |
| MboI | GATC | 3 cut(s) | 444, 724, 873 |
| MboII | GAAGA | 9 cut(s) | 38, 428, 491, 654, 725, 751, 754, 985, 1108 |
| MfeI | CAATTG | 1 cut(s) | 399 |
| MflI | RGATCY | 1 cut(s) | 444 |
| MhlI | GDGCHC | 1 cut(s) | 175 |
| MluCI | AATT | 6 cut(s) | 90, 281, 349, 399, 573, 794 |
| MlyI | GAGTC | 4 cut(s) | 173, 1028, 1120, 1175 |
| MmeI | TCCRAC | 1 cut(s) | 336 |
| Mph1103I | ATGCAT | 3 cut(s) | 273, 373, 886 |
| MseI | TTAA | 3 cut(s) | 84, 429, 653 |
| MspA1I | CMGCKG | 2 cut(s) | 997, 1034 |
| MspR9I | CCNGG | 1 cut(s) | 852 |
| MunI | CAATTG | 1 cut(s) | 399 |
| Mva1269I | GAATGC | 1 cut(s) | 371 |
| MvaI | CCWGG | 1 cut(s) | 852 |
| MvnI | CGCG | 1 cut(s) | 960 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 594, 683, 957, 1006, 1222 |
| NdeI | CATATG | 1 cut(s) | 886 |
| NdeII | GATC | 3 cut(s) | 444, 724, 873 |
| NlaIII | CATG | 7 cut(s) | 73, 333, 452, 479, 639, 677, 754 |
| NlaIV | GGNNCC | 5 cut(s) | 124, 242, 446, 910, 1045 |
| NmeAIII | GCCGAG | 1 cut(s) | 950 |
| NmuCI | GTSAC | 3 cut(s) | 65, 332, 1157 |
| NsiI | ATGCAT | 3 cut(s) | 273, 373, 886 |
| NspI | RCATGY | 3 cut(s) | 333, 639, 677 |
| PaeI | GCATGC | 1 cut(s) | 639 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 987, 1100 |
| PctI | GAATGC | 1 cut(s) | 371 |
| PkrI | GCNGC | 6 cut(s) | 328, 535, 599, 950, 953, 999 |
| PleI | GAGTC | 4 cut(s) | 173, 1027, 1119, 1174 |
| PpsI | GAGTC | 4 cut(s) | 173, 1027, 1119, 1174 |
| Psp6I | CCWGG | 1 cut(s) | 850 |
| PspGI | CCWGG | 1 cut(s) | 850 |
| PspN4I | GGNNCC | 5 cut(s) | 124, 242, 446, 910, 1045 |
| PspPI | GGNCC | 3 cut(s) | 123, 566, 1029 |
| PstI | CTGCAG | 1 cut(s) | 136 |
| PsuI | RGATCY | 1 cut(s) | 444 |
| RsaI | GTAC | 4 cut(s) | 381, 839, 993, 1081 |
| RsaNI | GTAC | 4 cut(s) | 380, 838, 992, 1080 |
| SalI | GTCGAC | 1 cut(s) | 1102 |
| SaqAI | TTAA | 3 cut(s) | 84, 429, 653 |
| SatI | GCNGC | 6 cut(s) | 327, 534, 598, 949, 952, 998 |
| Sau3AI | GATC | 3 cut(s) | 444, 724, 873 |
| Sau96I | GGNCC | 3 cut(s) | 123, 566, 1029 |
| SchI | GAGTC | 4 cut(s) | 173, 1028, 1120, 1175 |
| ScrFI | CCNGG | 1 cut(s) | 852 |
| SduI | GDGCHC | 1 cut(s) | 175 |
| SfaNI | GCATC | 2 cut(s) | 669, 871 |
| SfcI | CTRYAG | 1 cut(s) | 132 |
| SinI | GGWCC | 2 cut(s) | 123, 1029 |
| SmlI | CTYRAG | 2 cut(s) | 527, 1001 |
| SmoI | CTYRAG | 2 cut(s) | 527, 1001 |
| SphI | GCATGC | 1 cut(s) | 639 |
| Sse9I | AATT | 6 cut(s) | 90, 281, 349, 399, 573, 794 |
| SsiI | CCGC | 5 cut(s) | 126, 960, 997, 1009, 1032 |
| SspMI | CTAG | 2 cut(s) | 501, 657 |
| StyD4I | CCNGG | 1 cut(s) | 850 |
| StyI | CCWWGG | 2 cut(s) | 500, 860 |
| TaaI | ACNGT | 1 cut(s) | 837 |
| TaqI | TCGA | 5 cut(s) | 942, 1022, 1094, 1103, 1109 |
| TasI | AATT | 6 cut(s) | 90, 281, 349, 399, 573, 794 |
| TatI | WGTACW | 1 cut(s) | 837 |
| TauI | GCSGC | 1 cut(s) | 1000 |
| Tru1I | TTAA | 3 cut(s) | 84, 429, 653 |
| Tru9I | TTAA | 3 cut(s) | 84, 429, 653 |
| TscAI | CASTG | 2 cut(s) | 734, 1122 |
| TseFI | GTSAC | 3 cut(s) | 65, 332, 1157 |
| TseI | GCWGC | 5 cut(s) | 326, 533, 597, 948, 951 |
| Tsp45I | GTSAC | 3 cut(s) | 65, 332, 1157 |
| TspDTI | ATGAA | 6 cut(s) | 39, 102, 171, 311, 364, 492 |
| TspGWI | ACGGA | 1 cut(s) | 979 |
| TspRI | CASTG | 2 cut(s) | 734, 1122 |
| VpaK11BI | GGWCC | 2 cut(s) | 123, 1029 |
| XceI | RCATGY | 3 cut(s) | 333, 639, 677 |
| XmaJI | CCTAGG | 1 cut(s) | 500 |
| XmiI | GTMKAC | 1 cut(s) | 1103 |
| XspI | CTAG | 2 cut(s) | 501, 657 |
| Zsp2I | ATGCAT | 3 cut(s) | 273, 373, 886 |