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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 564 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 954 |
| AccI | GTMKAC | 1 cut(s) | 873 |
| AciI | CCGC | 3 cut(s) | 59, 327, 372 |
| AclWI | GGATC | 2 cut(s) | 363, 444 |
| AcoI | YGGCCR | 1 cut(s) | 569 |
| AcsI | RAATTY | 1 cut(s) | 1465 |
| AfaI | GTAC | 3 cut(s) | 746, 808, 1051 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 113, 528, 954, 1350 |
| AflIII | ACRYGT | 2 cut(s) | 890, 1056 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1060 |
| AjnI | CCWGG | 1 cut(s) | 418 |
| Alw21I | GWGCWC | 1 cut(s) | 1584 |
| Alw26I | GTCTC | 1 cut(s) | 762 |
| Alw44I | GTGCAC | 1 cut(s) | 1580 |
| AlwI | GGATC | 2 cut(s) | 363, 444 |
| Ama87I | CYCGRG | 1 cut(s) | 971 |
| AoxI | GGCC | 8 cut(s) | 115, 292, 548, 569, 1076, 1176, 1352, 1439 |
| ApaLI | GTGCAC | 1 cut(s) | 1580 |
| ApeKI | GCWGC | 6 cut(s) | 897, 1301, 1322, 1388, 1391, 1457 |
| ApoI | RAATTY | 1 cut(s) | 1465 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 849 |
| AspLEI | GCGC | 1 cut(s) | 1388 |
| AspS9I | GGNCC | 2 cut(s) | 396, 1076 |
| AsuII | TTCGAA | 2 cut(s) | 678, 998 |
| AvaI | CYCGRG | 1 cut(s) | 971 |
| AvaII | GGWCC | 1 cut(s) | 396 |
| AxyI | CCTNAGG | 1 cut(s) | 878 |
| BaeGI | GKGCMC | 1 cut(s) | 1584 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 992, 1024 |
| BbsI | GAAGAC | 2 cut(s) | 1010, 1378 |
| Bbv12I | GWGCWC | 1 cut(s) | 1584 |
| BbvCI | CCTCAGC | 1 cut(s) | 14 |
| BbvI | GCAGC | 6 cut(s) | 884, 1288, 1334, 1378, 1400, 1444 |
| BccI | CCATC | 6 cut(s) | 31, 80, 248, 258, 900, 956 |
| BceAI | ACGGC | 1 cut(s) | 1421 |
| BciT130I | CCWGG | 1 cut(s) | 420 |
| BciVI | GTATCC | 1 cut(s) | 454 |
| BclI | TGATCA | 1 cut(s) | 1204 |
| BcoDI | GTCTC | 1 cut(s) | 762 |
| BfaI | CTAG | 3 cut(s) | 348, 366, 651 |
| BfmI | CTRYAG | 4 cut(s) | 798, 898, 1021, 1113 |
| BfuI | GTATCC | 1 cut(s) | 454 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1117 |
| BisI | GCNGC | 6 cut(s) | 898, 1302, 1323, 1389, 1392, 1458 |
| BlpI | GCTNAGC | 1 cut(s) | 1453 |
| BlsI | GCNGC | 6 cut(s) | 899, 1303, 1324, 1390, 1393, 1459 |
| Bme1390I | CCNGG | 1 cut(s) | 420 |
| Bme18I | GGWCC | 1 cut(s) | 396 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1060 |
| BmeT110I | CYCGRG | 1 cut(s) | 971 |
| BmgT120I | GGNCC | 2 cut(s) | 396, 1076 |
| BmiI | GGNNCC | 2 cut(s) | 859, 1077 |
| BmrFI | CCNGG | 1 cut(s) | 420 |
| BmrI | ACTGGG | 1 cut(s) | 169 |
| BmsI | GCATC | 6 cut(s) | 133, 508, 637, 1201, 1502, 1517 |
| BmuI | ACTGGG | 1 cut(s) | 169 |
| BpiI | GAAGAC | 2 cut(s) | 1010, 1378 |
| Bpu10I | CCTNAGC | 2 cut(s) | 14, 1562 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1453 |
| Bpu14I | TTCGAA | 2 cut(s) | 678, 998 |
| BsaJI | CCNNGG | 2 cut(s) | 456, 972 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 113, 528, 954, 1350 |
| Bse1I | ACTGG | 5 cut(s) | 164, 382, 922, 959, 1376 |
| Bse21I | CCTNAGG | 1 cut(s) | 878 |
| Bse3DI | GCAATG | 1 cut(s) | 1189 |
| BseBI | CCWGG | 1 cut(s) | 420 |
| BseDI | CCNNGG | 2 cut(s) | 456, 972 |
| BseGI | GGATG | 8 cut(s) | 148, 269, 523, 537, 652, 1334, 1340, 1575 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 113, 528, 954, 1350 |
| BseMI | GCAATG | 1 cut(s) | 1189 |
| BseMII | CTCAG | 3 cut(s) | 5, 875, 1467 |
| BseNI | ACTGG | 5 cut(s) | 164, 382, 922, 959, 1376 |
| BseRI | GAGGAG | 1 cut(s) | 83 |
| BseSI | GKGCMC | 1 cut(s) | 1584 |
| BseXI | GCAGC | 6 cut(s) | 884, 1288, 1334, 1378, 1400, 1444 |
| BshFI | GGCC | 8 cut(s) | 117, 294, 550, 571, 1078, 1178, 1354, 1441 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1584 |
| BsiHKCI | CYCGRG | 1 cut(s) | 971 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 113, 528, 954, 1350 |
| BsmAI | GTCTC | 1 cut(s) | 762 |
| BsmI | GAATGC | 3 cut(s) | 92, 1113, 1276 |
| BsnI | GGCC | 8 cut(s) | 117, 294, 550, 571, 1078, 1178, 1354, 1441 |
| BsoBI | CYCGRG | 1 cut(s) | 971 |
| Bsp119I | TTCGAA | 2 cut(s) | 678, 998 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1584 |
| Bsp143I | GATC | 5 cut(s) | 368, 436, 505, 1204, 1529 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1453 |
| BspACI | CCGC | 3 cut(s) | 59, 327, 372 |
| BspANI | GGCC | 8 cut(s) | 117, 294, 550, 571, 1078, 1178, 1354, 1441 |
| BspCNI | CTCAG | 3 cut(s) | 6, 876, 1466 |
| BspLI | GGNNCC | 2 cut(s) | 859, 1077 |
| BspMAI | CTGCAG | 1 cut(s) | 902 |
| BspPI | GGATC | 2 cut(s) | 363, 444 |
| BspT104I | TTCGAA | 2 cut(s) | 678, 998 |
| BsrDI | GCAATG | 1 cut(s) | 1189 |
| BsrI | ACTGG | 5 cut(s) | 164, 382, 922, 959, 1376 |
| BssECI | CCNNGG | 2 cut(s) | 456, 972 |
| BssMI | GATC | 5 cut(s) | 368, 436, 505, 1204, 1529 |
| BssT1I | CCWWGG | 1 cut(s) | 456 |
| Bst2UI | CCWGG | 1 cut(s) | 420 |
| Bst4CI | ACNGT | 4 cut(s) | 130, 1049, 1348, 1423 |
| Bst6I | CTCTTC | 4 cut(s) | 95, 489, 953, 1163 |
| BstBI | TTCGAA | 2 cut(s) | 678, 998 |
| BstC8I | GCNNGC | 4 cut(s) | 119, 932, 936, 1180 |
| BstDEI | CTNAG | 7 cut(s) | 14, 82, 238, 878, 884, 1453, 1562 |
| BstF5I | GGATG | 8 cut(s) | 148, 269, 523, 537, 652, 1334, 1340, 1575 |
| BstHHI | GCGC | 1 cut(s) | 1388 |
| BstKTI | GATC | 5 cut(s) | 371, 439, 508, 1207, 1532 |
| BstMAI | GTCTC | 1 cut(s) | 762 |
| BstMBI | GATC | 5 cut(s) | 368, 436, 505, 1204, 1529 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 944, 1117, 1307 |
| BstNI | CCWGG | 1 cut(s) | 420 |
| BstNSI | RCATGY | 5 cut(s) | 309, 894, 938, 1060, 1137 |
| BstSCI | CCNGG | 1 cut(s) | 418 |
| BstSFI | CTRYAG | 4 cut(s) | 798, 898, 1021, 1113 |
| BstSLI | GKGCMC | 1 cut(s) | 1584 |
| BstV1I | GCAGC | 6 cut(s) | 884, 1288, 1334, 1378, 1400, 1444 |
| BstV2I | GAAGAC | 2 cut(s) | 1010, 1378 |
| BstX2I | RGATCY | 1 cut(s) | 368 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 561 |
| BstYI | RGATCY | 1 cut(s) | 368 |
| Bsu36I | CCTNAGG | 1 cut(s) | 878 |
| BsuI | GTATCC | 1 cut(s) | 454 |
| BsuRI | GGCC | 8 cut(s) | 117, 294, 550, 571, 1078, 1178, 1354, 1441 |
| BtsCI | GGATG | 8 cut(s) | 148, 269, 523, 537, 652, 1334, 1340, 1575 |
| BtsIMutI | CAGTG | 1 cut(s) | 375 |
| Cac8I | GCNNGC | 4 cut(s) | 119, 932, 936, 1180 |
| CfoI | GCGC | 1 cut(s) | 1388 |
| Cfr13I | GGNCC | 2 cut(s) | 396, 1076 |
| Csp6I | GTAC | 3 cut(s) | 745, 807, 1050 |
| CviQI | GTAC | 3 cut(s) | 745, 807, 1050 |
| DdeI | CTNAG | 7 cut(s) | 14, 82, 238, 878, 884, 1453, 1562 |
| DpnI | GATC | 5 cut(s) | 370, 438, 507, 1206, 1531 |
| DpnII | GATC | 5 cut(s) | 368, 436, 505, 1204, 1529 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 564 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1060 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 564 |
| EaeI | YGGCCR | 1 cut(s) | 569 |
| Eam1104I | CTCTTC | 4 cut(s) | 95, 489, 953, 1163 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1060 |
| EarI | CTCTTC | 4 cut(s) | 95, 489, 953, 1163 |
| EciI | GGCGGA | 1 cut(s) | 361 |
| Eco130I | CCWWGG | 1 cut(s) | 456 |
| Eco147I | AGGCCT | 3 cut(s) | 294, 550, 1354 |
| Eco32I | GATATC | 1 cut(s) | 244 |
| Eco47I | GGWCC | 1 cut(s) | 396 |
| Eco81I | CCTNAGG | 1 cut(s) | 878 |
| Eco88I | CYCGRG | 1 cut(s) | 971 |
| EcoRII | CCWGG | 1 cut(s) | 418 |
| EcoRV | GATATC | 1 cut(s) | 244 |
| EcoT14I | CCWWGG | 1 cut(s) | 456 |
| EcoT22I | ATGCAT | 1 cut(s) | 1489 |
| ErhI | CCWWGG | 1 cut(s) | 456 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 757, 789 |
| FauI | CCCGC | 1 cut(s) | 320 |
| FauNDI | CATATG | 1 cut(s) | 390 |
| FbaI | TGATCA | 1 cut(s) | 1204 |
| FblI | GTMKAC | 1 cut(s) | 873 |
| Fnu4HI | GCNGC | 6 cut(s) | 898, 1302, 1323, 1389, 1392, 1458 |
| FokI | GGATG | 8 cut(s) | 155, 276, 530, 544, 659, 1321, 1327, 1582 |
| Fsp4HI | GCNGC | 6 cut(s) | 898, 1302, 1323, 1389, 1392, 1458 |
| FspBI | CTAG | 3 cut(s) | 348, 366, 651 |
| GlaI | GCGC | 1 cut(s) | 1387 |
| GluI | GCNGC | 6 cut(s) | 898, 1302, 1323, 1389, 1392, 1458 |
| HaeIII | GGCC | 8 cut(s) | 117, 294, 550, 571, 1078, 1178, 1354, 1441 |
| HhaI | GCGC | 1 cut(s) | 1388 |
| Hin6I | GCGC | 1 cut(s) | 1386 |
| HinP1I | GCGC | 1 cut(s) | 1386 |
| HincII | GTYRAC | 1 cut(s) | 874 |
| HindII | GTYRAC | 1 cut(s) | 874 |
| HindIII | AAGCTT | 1 cut(s) | 695 |
| HinfI | GANTC | 8 cut(s) | 103, 200, 361, 709, 921, 965, 1237, 1518 |
| Hpy166II | GTNNAC | 3 cut(s) | 396, 874, 1582 |
| Hpy188I | TCNGA | 4 cut(s) | 338, 1204, 1242, 1523 |
| Hpy188III | TCNNGA | 2 cut(s) | 97, 1104 |
| Hpy8I | GTNNAC | 3 cut(s) | 396, 874, 1582 |
| HpyAV | CCTTC | 5 cut(s) | 427, 714, 1104, 1168, 1181 |
| HpyCH4III | ACNGT | 4 cut(s) | 130, 1049, 1348, 1423 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 944, 1117, 1307 |
| HpyF3I | CTNAG | 7 cut(s) | 14, 82, 238, 878, 884, 1453, 1562 |
| HspAI | GCGC | 1 cut(s) | 1386 |
| Ksp22I | TGATCA | 1 cut(s) | 1204 |
| Kzo9I | GATC | 5 cut(s) | 368, 436, 505, 1204, 1529 |
| Lsp1109I | GCAGC | 6 cut(s) | 884, 1288, 1334, 1378, 1400, 1444 |
| LweI | GCATC | 6 cut(s) | 133, 508, 637, 1201, 1502, 1517 |
| MaeI | CTAG | 3 cut(s) | 348, 366, 651 |
| MaeIII | GTNAC | 3 cut(s) | 278, 596, 667 |
| MalI | GATC | 5 cut(s) | 370, 438, 507, 1206, 1531 |
| MboI | GATC | 5 cut(s) | 368, 436, 505, 1204, 1529 |
| MfeI | CAATTG | 1 cut(s) | 592 |
| MflI | RGATCY | 1 cut(s) | 368 |
| MhlI | GDGCHC | 1 cut(s) | 1584 |
| MluCI | AATT | 4 cut(s) | 400, 592, 1027, 1465 |
| MlyI | GAGTC | 2 cut(s) | 112, 1231 |
| MmeI | TCCRAC | 1 cut(s) | 1345 |
| Mph1103I | ATGCAT | 1 cut(s) | 1489 |
| MroXI | GAANNNNTTC | 1 cut(s) | 849 |
| MseI | TTAA | 6 cut(s) | 27, 51, 483, 510, 812, 1044 |
| MslI | CAYNNNNRTG | 1 cut(s) | 208 |
| MspA1I | CMGCKG | 2 cut(s) | 1391, 1457 |
| MspR9I | CCNGG | 1 cut(s) | 420 |
| MunI | CAATTG | 1 cut(s) | 592 |
| Mva1269I | GAATGC | 3 cut(s) | 92, 1113, 1276 |
| MvaI | CCWGG | 1 cut(s) | 420 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 944, 1117, 1307 |
| NdeI | CATATG | 1 cut(s) | 390 |
| NdeII | GATC | 5 cut(s) | 368, 436, 505, 1204, 1529 |
| NlaIV | GGNNCC | 2 cut(s) | 859, 1077 |
| NmeAIII | GCCGAG | 1 cut(s) | 1012 |
| NmuCI | GTSAC | 2 cut(s) | 278, 596 |
| NsiI | ATGCAT | 1 cut(s) | 1489 |
| NspI | RCATGY | 5 cut(s) | 309, 894, 938, 1060, 1137 |
| NspV | TTCGAA | 2 cut(s) | 678, 998 |
| PaeI | GCATGC | 1 cut(s) | 938 |
| PceI | AGGCCT | 3 cut(s) | 294, 550, 1354 |
| PciI | ACATGT | 2 cut(s) | 890, 1056 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 639 |
| PctI | GAATGC | 3 cut(s) | 92, 1113, 1276 |
| PdmI | GAANNNNTTC | 1 cut(s) | 849 |
| PfeI | GAWTC | 6 cut(s) | 200, 361, 709, 921, 965, 1518 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 954 |
| PfoI | TCCNGGA | 1 cut(s) | 418 |
| PkrI | GCNGC | 6 cut(s) | 899, 1303, 1324, 1390, 1393, 1459 |
| PleI | GAGTC | 2 cut(s) | 111, 1231 |
| PpsI | GAGTC | 2 cut(s) | 111, 1231 |
| PscI | ACATGT | 2 cut(s) | 890, 1056 |
| Psp6I | CCWGG | 1 cut(s) | 418 |
| PspGI | CCWGG | 1 cut(s) | 418 |
| PspN4I | GGNNCC | 2 cut(s) | 859, 1077 |
| PspPI | GGNCC | 2 cut(s) | 396, 1076 |
| PstI | CTGCAG | 1 cut(s) | 902 |
| PsuI | RGATCY | 1 cut(s) | 368 |
| PvuII | CAGCTG | 2 cut(s) | 1391, 1457 |
| RsaI | GTAC | 3 cut(s) | 746, 808, 1051 |
| RsaNI | GTAC | 3 cut(s) | 745, 807, 1050 |
| RseI | CAYNNNNRTG | 1 cut(s) | 208 |
| SalI | GTCGAC | 1 cut(s) | 872 |
| SaqAI | TTAA | 6 cut(s) | 27, 51, 483, 510, 812, 1044 |
| SatI | GCNGC | 6 cut(s) | 898, 1302, 1323, 1389, 1392, 1458 |
| Sau3AI | GATC | 5 cut(s) | 368, 436, 505, 1204, 1529 |
| Sau96I | GGNCC | 2 cut(s) | 396, 1076 |
| SchI | GAGTC | 2 cut(s) | 112, 1231 |
| ScrFI | CCNGG | 1 cut(s) | 420 |
| SduI | GDGCHC | 1 cut(s) | 1584 |
| SfaNI | GCATC | 6 cut(s) | 133, 508, 637, 1201, 1502, 1517 |
| SfcI | CTRYAG | 4 cut(s) | 798, 898, 1021, 1113 |
| SfuI | TTCGAA | 2 cut(s) | 678, 998 |
| SinI | GGWCC | 1 cut(s) | 396 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 208 |
| SphI | GCATGC | 1 cut(s) | 938 |
| Sse9I | AATT | 4 cut(s) | 400, 592, 1027, 1465 |
| SseBI | AGGCCT | 3 cut(s) | 294, 550, 1354 |
| SsiI | CCGC | 3 cut(s) | 59, 327, 372 |
| SspI | AATATT | 1 cut(s) | 751 |
| SspMI | CTAG | 3 cut(s) | 348, 366, 651 |
| StuI | AGGCCT | 3 cut(s) | 294, 550, 1354 |
| StyD4I | CCNGG | 1 cut(s) | 418 |
| StyI | CCWWGG | 1 cut(s) | 456 |
| TaaI | ACNGT | 4 cut(s) | 130, 1049, 1348, 1423 |
| TaqI | TCGA | 3 cut(s) | 678, 873, 998 |
| TasI | AATT | 4 cut(s) | 400, 592, 1027, 1465 |
| TatI | WGTACW | 3 cut(s) | 744, 806, 1049 |
| TfiI | GAWTC | 6 cut(s) | 200, 361, 709, 921, 965, 1518 |
| Tru1I | TTAA | 6 cut(s) | 27, 51, 483, 510, 812, 1044 |
| Tru9I | TTAA | 6 cut(s) | 27, 51, 483, 510, 812, 1044 |
| TscAI | CASTG | 1 cut(s) | 382 |
| TseFI | GTSAC | 2 cut(s) | 278, 596 |
| TseI | GCWGC | 6 cut(s) | 897, 1301, 1322, 1388, 1391, 1457 |
| Tsp45I | GTSAC | 2 cut(s) | 278, 596 |
| TspDTI | ATGAA | 9 cut(s) | 192, 204, 515, 716, 1021, 1086, 1200, 1260, 1576 |
| TspRI | CASTG | 1 cut(s) | 382 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 954 |
| VneI | GTGCAC | 1 cut(s) | 1580 |
| VpaK11BI | GGWCC | 1 cut(s) | 396 |
| XapI | RAATTY | 1 cut(s) | 1465 |
| XceI | RCATGY | 5 cut(s) | 309, 894, 938, 1060, 1137 |
| XmiI | GTMKAC | 1 cut(s) | 873 |
| XmnI | GAANNNNTTC | 1 cut(s) | 849 |
| XspI | CTAG | 3 cut(s) | 348, 366, 651 |
| Zsp2I | ATGCAT | 1 cut(s) | 1489 |