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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 764 |
| AarI | CACCTGC | 1 cut(s) | 97 |
| Acc36I | ACCTGC | 4 cut(s) | 97, 325, 585, 1506 |
| AccB1I | GGYRCC | 2 cut(s) | 276, 1075 |
| AciI | CCGC | 3 cut(s) | 6, 1012, 1015 |
| AclWI | GGATC | 4 cut(s) | 44, 220, 518, 1690 |
| AcoI | YGGCCR | 1 cut(s) | 390 |
| AcsI | RAATTY | 1 cut(s) | 72 |
| AcuI | CTGAAG | 2 cut(s) | 243, 928 |
| AfaI | GTAC | 4 cut(s) | 930, 1228, 1589, 1625 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 980, 1125, 1504 |
| AflII | CTTAAG | 1 cut(s) | 1101 |
| AflIII | ACRYGT | 2 cut(s) | 379, 1274 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1278 |
| AjnI | CCWGG | 3 cut(s) | 228, 657, 1329 |
| AluBI | AGCT | 8 cut(s) | 145, 313, 367, 462, 518, 1054, 1426, 1594 |
| AluI | AGCT | 8 cut(s) | 145, 313, 367, 462, 518, 1054, 1426, 1594 |
| Alw21I | GWGCWC | 1 cut(s) | 369 |
| Alw26I | GTCTC | 2 cut(s) | 460, 1640 |
| AlwI | GGATC | 4 cut(s) | 44, 220, 518, 1690 |
| AoxI | GGCC | 4 cut(s) | 390, 1336, 1510, 1546 |
| ApeKI | GCWGC | 2 cut(s) | 145, 1326 |
| ApoI | RAATTY | 1 cut(s) | 72 |
| AseI | ATTAAT | 1 cut(s) | 1169 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 325 |
| AspS9I | GGNCC | 2 cut(s) | 1280, 1294 |
| AsuHPI | GGTGA | 5 cut(s) | 636, 790, 1017, 1237, 1300 |
| AvaII | GGWCC | 2 cut(s) | 1280, 1294 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1218, 1251 |
| BalI | TGGCCA | 1 cut(s) | 392 |
| BanI | GGYRCC | 2 cut(s) | 276, 1075 |
| BanII | GRGCYC | 1 cut(s) | 369 |
| BbsI | GAAGAC | 4 cut(s) | 382, 748, 1348, 1664 |
| Bbv12I | GWGCWC | 1 cut(s) | 369 |
| BbvI | GCAGC | 2 cut(s) | 132, 1338 |
| BccI | CCATC | 7 cut(s) | 606, 723, 1118, 1285, 1452, 1671, 1702 |
| BciT130I | CCWGG | 3 cut(s) | 230, 659, 1331 |
| BciVI | GTATCC | 1 cut(s) | 1312 |
| BcoDI | GTCTC | 2 cut(s) | 460, 1640 |
| BfaI | CTAG | 1 cut(s) | 1523 |
| BfmI | CTRYAG | 1 cut(s) | 1239 |
| BfrI | CTTAAG | 1 cut(s) | 1101 |
| BfuAI | ACCTGC | 4 cut(s) | 97, 325, 585, 1506 |
| BfuI | GTATCC | 1 cut(s) | 1312 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1335 |
| BisI | GCNGC | 4 cut(s) | 7, 146, 1013, 1327 |
| BlsI | GCNGC | 4 cut(s) | 8, 147, 1014, 1328 |
| Bme1390I | CCNGG | 3 cut(s) | 230, 659, 1331 |
| Bme18I | GGWCC | 2 cut(s) | 1280, 1294 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1278 |
| BmgT120I | GGNCC | 2 cut(s) | 1280, 1294 |
| BmiI | GGNNCC | 4 cut(s) | 234, 278, 596, 1077 |
| BmrFI | CCNGG | 3 cut(s) | 230, 659, 1331 |
| BmsI | GCATC | 6 cut(s) | 179, 408, 747, 1034, 1476, 1648 |
| BpiI | GAAGAC | 4 cut(s) | 382, 748, 1348, 1664 |
| BpmI | CTGGAG | 1 cut(s) | 484 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1427 |
| BpuEI | CTTGAG | 2 cut(s) | 1201, 1488 |
| BsaJI | CCNNGG | 3 cut(s) | 957, 1283, 1543 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 912, 942 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 980, 1125, 1504 |
| Bse1I | ACTGG | 3 cut(s) | 772, 1258, 1604 |
| Bse3DI | GCAATG | 2 cut(s) | 458, 1199 |
| BseBI | CCWGG | 3 cut(s) | 230, 659, 1331 |
| BseDI | CCNNGG | 3 cut(s) | 957, 1283, 1543 |
| BseGI | GGATG | 2 cut(s) | 1025, 1365 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 980, 1125, 1504 |
| BseMI | GCAATG | 2 cut(s) | 458, 1199 |
| BseMII | CTCAG | 3 cut(s) | 505, 1046, 1430 |
| BseNI | ACTGG | 3 cut(s) | 772, 1258, 1604 |
| BseRI | GAGGAG | 2 cut(s) | 748, 933 |
| BseXI | GCAGC | 2 cut(s) | 132, 1338 |
| BsgI | GTGCAG | 1 cut(s) | 587 |
| BshFI | GGCC | 4 cut(s) | 392, 1338, 1512, 1548 |
| BshNI | GGYRCC | 2 cut(s) | 276, 1075 |
| BsiHKAI | GWGCWC | 1 cut(s) | 369 |
| BslFI | GGGAC | 2 cut(s) | 952, 1141 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 980, 1125, 1504 |
| BsmAI | GTCTC | 2 cut(s) | 460, 1640 |
| BsmFI | GGGAC | 2 cut(s) | 952, 1141 |
| BsnI | GGCC | 4 cut(s) | 392, 1338, 1512, 1548 |
| Bsp1286I | GDGCHC | 1 cut(s) | 369 |
| Bsp1407I | TGTACA | 1 cut(s) | 1623 |
| Bsp143I | GATC | 8 cut(s) | 36, 225, 343, 510, 608, 675, 854, 1682 |
| Bsp19I | CCATGG | 1 cut(s) | 957 |
| BspACI | CCGC | 3 cut(s) | 6, 1012, 1015 |
| BspANI | GGCC | 4 cut(s) | 392, 1338, 1512, 1548 |
| BspCNI | CTCAG | 3 cut(s) | 506, 1047, 1431 |
| BspLI | GGNNCC | 4 cut(s) | 234, 278, 596, 1077 |
| BspMI | ACCTGC | 4 cut(s) | 97, 325, 585, 1506 |
| BspPI | GGATC | 4 cut(s) | 44, 220, 518, 1690 |
| BspT107I | GGYRCC | 2 cut(s) | 276, 1075 |
| BspTI | CTTAAG | 1 cut(s) | 1101 |
| BsrDI | GCAATG | 2 cut(s) | 458, 1199 |
| BsrGI | TGTACA | 1 cut(s) | 1623 |
| BsrI | ACTGG | 3 cut(s) | 772, 1258, 1604 |
| BssECI | CCNNGG | 3 cut(s) | 957, 1283, 1543 |
| BssMI | GATC | 8 cut(s) | 36, 225, 343, 510, 608, 675, 854, 1682 |
| BssT1I | CCWWGG | 3 cut(s) | 957, 1283, 1543 |
| Bst2UI | CCWGG | 3 cut(s) | 230, 659, 1331 |
| Bst4CI | ACNGT | 2 cut(s) | 497, 1243 |
| Bst6I | CTCTTC | 1 cut(s) | 890 |
| BstAFI | CTTAAG | 1 cut(s) | 1101 |
| BstAUI | TGTACA | 1 cut(s) | 1623 |
| BstC8I | GCNNGC | 3 cut(s) | 96, 194, 874 |
| BstDEI | CTNAG | 5 cut(s) | 80, 514, 1055, 1427, 1439 |
| BstDSI | CCRYGG | 1 cut(s) | 957 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1502 |
| BstF5I | GGATG | 2 cut(s) | 1025, 1365 |
| BstKTI | GATC | 8 cut(s) | 39, 228, 346, 513, 611, 678, 857, 1685 |
| BstMAI | GTCTC | 2 cut(s) | 460, 1640 |
| BstMBI | GATC | 8 cut(s) | 36, 225, 343, 510, 608, 675, 854, 1682 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 133, 142, 193, 1162, 1335, 1564, 1600 |
| BstNI | CCWGG | 3 cut(s) | 230, 659, 1331 |
| BstNSI | RCATGY | 4 cut(s) | 383, 819, 1156, 1278 |
| BstSCI | CCNGG | 3 cut(s) | 228, 657, 1329 |
| BstSFI | CTRYAG | 1 cut(s) | 1239 |
| BstV1I | GCAGC | 2 cut(s) | 132, 1338 |
| BstV2I | GAAGAC | 4 cut(s) | 382, 748, 1348, 1664 |
| BstX2I | RGATCY | 1 cut(s) | 510 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 123 |
| BstYI | RGATCY | 1 cut(s) | 510 |
| BsuI | GTATCC | 1 cut(s) | 1312 |
| BsuRI | GGCC | 4 cut(s) | 392, 1338, 1512, 1548 |
| BtgI | CCRYGG | 1 cut(s) | 957 |
| BtsCI | GGATG | 2 cut(s) | 1025, 1365 |
| BtsIMutI | CAGTG | 1 cut(s) | 353 |
| BveI | ACCTGC | 4 cut(s) | 97, 325, 585, 1506 |
| Cac8I | GCNNGC | 3 cut(s) | 96, 194, 874 |
| Cfr13I | GGNCC | 2 cut(s) | 1280, 1294 |
| Csp6I | GTAC | 4 cut(s) | 929, 1227, 1588, 1624 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1026, 1061 |
| CviAII | CATG | 9 cut(s) | 380, 434, 816, 958, 1153, 1176, 1230, 1269, 1275 |
| CviQI | GTAC | 4 cut(s) | 929, 1227, 1588, 1624 |
| DdeI | CTNAG | 5 cut(s) | 80, 514, 1055, 1427, 1439 |
| DpnI | GATC | 8 cut(s) | 38, 227, 345, 512, 610, 677, 856, 1684 |
| DpnII | GATC | 8 cut(s) | 36, 225, 343, 510, 608, 675, 854, 1682 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1278 |
| EaeI | YGGCCR | 1 cut(s) | 390 |
| Eam1104I | CTCTTC | 1 cut(s) | 890 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1278 |
| EarI | CTCTTC | 1 cut(s) | 890 |
| EciI | GGCGGA | 1 cut(s) | 1030 |
| Ecl136II | GAGCTC | 1 cut(s) | 367 |
| Eco130I | CCWWGG | 3 cut(s) | 957, 1283, 1543 |
| Eco147I | AGGCCT | 2 cut(s) | 1512, 1548 |
| Eco24I | GRGCYC | 1 cut(s) | 369 |
| Eco47I | GGWCC | 2 cut(s) | 1280, 1294 |
| Eco53kI | GAGCTC | 1 cut(s) | 367 |
| Eco57I | CTGAAG | 2 cut(s) | 243, 928 |
| EcoICRI | GAGCTC | 1 cut(s) | 367 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1502 |
| EcoRII | CCWGG | 3 cut(s) | 228, 657, 1329 |
| EcoT14I | CCWWGG | 3 cut(s) | 957, 1283, 1543 |
| EcoT22I | ATGCAT | 1 cut(s) | 852 |
| EcoT38I | GRGCYC | 1 cut(s) | 369 |
| ErhI | CCWWGG | 3 cut(s) | 957, 1283, 1543 |
| FaeI | CATG | 9 cut(s) | 383, 437, 819, 961, 1156, 1179, 1233, 1272, 1278 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 111, 143 |
| FaqI | GGGAC | 2 cut(s) | 952, 1141 |
| FatI | CATG | 9 cut(s) | 379, 433, 815, 957, 1152, 1175, 1229, 1268, 1274 |
| Fnu4HI | GCNGC | 4 cut(s) | 7, 146, 1013, 1327 |
| FokI | GGATG | 2 cut(s) | 1012, 1372 |
| FriOI | GRGCYC | 1 cut(s) | 369 |
| Fsp4HI | GCNGC | 4 cut(s) | 7, 146, 1013, 1327 |
| FspBI | CTAG | 1 cut(s) | 1523 |
| GluI | GCNGC | 4 cut(s) | 7, 146, 1013, 1327 |
| GsuI | CTGGAG | 1 cut(s) | 484 |
| HaeIII | GGCC | 4 cut(s) | 392, 1338, 1512, 1548 |
| Hin1II | CATG | 9 cut(s) | 383, 437, 819, 961, 1156, 1179, 1233, 1272, 1278 |
| HinfI | GANTC | 3 cut(s) | 326, 475, 924 |
| HphI | GGTGA | 5 cut(s) | 636, 790, 1017, 1237, 1300 |
| Hpy166II | GTNNAC | 3 cut(s) | 635, 861, 1092 |
| Hpy188I | TCNGA | 6 cut(s) | 270, 412, 515, 680, 722, 1368 |
| Hpy188III | TCNNGA | 5 cut(s) | 288, 1218, 1580, 1643, 1686 |
| Hpy8I | GTNNAC | 3 cut(s) | 635, 861, 1092 |
| HpyAV | CCTTC | 7 cut(s) | 157, 201, 267, 717, 929, 1066, 1502 |
| HpyCH4III | ACNGT | 2 cut(s) | 497, 1243 |
| HpyCH4IV | ACGT | 1 cut(s) | 1225 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 133, 142, 193, 1162, 1335, 1564, 1600 |
| HpyF3I | CTNAG | 5 cut(s) | 80, 514, 1055, 1427, 1439 |
| HpySE526I | ACGT | 1 cut(s) | 1225 |
| Hsp92II | CATG | 9 cut(s) | 383, 437, 819, 961, 1156, 1179, 1233, 1272, 1278 |
| Kzo9I | GATC | 8 cut(s) | 36, 225, 343, 510, 608, 675, 854, 1682 |
| LmnI | GCTCC | 5 cut(s) | 177, 310, 364, 869, 1209 |
| Lsp1109I | GCAGC | 2 cut(s) | 132, 1338 |
| LweI | GCATC | 6 cut(s) | 179, 408, 747, 1034, 1476, 1648 |
| MaeI | CTAG | 1 cut(s) | 1523 |
| MaeII | ACGT | 1 cut(s) | 1225 |
| MaeIII | GTNAC | 4 cut(s) | 253, 811, 882, 1243 |
| MalI | GATC | 8 cut(s) | 38, 227, 345, 512, 610, 677, 856, 1684 |
| MboI | GATC | 8 cut(s) | 36, 225, 343, 510, 608, 675, 854, 1682 |
| MboII | GAAGA | 9 cut(s) | 330, 387, 753, 907, 921, 1008, 1133, 1353, 1664 |
| MfeI | CAATTG | 2 cut(s) | 239, 1553 |
| MflI | RGATCY | 1 cut(s) | 510 |
| MhlI | GDGCHC | 1 cut(s) | 369 |
| MlsI | TGGCCA | 1 cut(s) | 392 |
| MluCI | AATT | 7 cut(s) | 41, 72, 239, 1166, 1553, 1692, 1713 |
| MluNI | TGGCCA | 1 cut(s) | 392 |
| MlyI | GAGTC | 1 cut(s) | 469 |
| MmeI | TCCRAC | 2 cut(s) | 390, 872 |
| Mox20I | TGGCCA | 1 cut(s) | 392 |
| Mph1103I | ATGCAT | 1 cut(s) | 852 |
| MroXI | GAANNNNTTC | 1 cut(s) | 325 |
| MscI | TGGCCA | 1 cut(s) | 392 |
| MseI | TTAA | 7 cut(s) | 19, 50, 1102, 1132, 1169, 1262, 1355 |
| MslI | CAYNNNNRTG | 2 cut(s) | 962, 1273 |
| Msp20I | TGGCCA | 1 cut(s) | 392 |
| MspCI | CTTAAG | 1 cut(s) | 1101 |
| MspR9I | CCNGG | 3 cut(s) | 230, 659, 1331 |
| MunI | CAATTG | 2 cut(s) | 239, 1553 |
| MvaI | CCWGG | 3 cut(s) | 230, 659, 1331 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 133, 142, 193, 1162, 1335, 1564, 1600 |
| NcoI | CCATGG | 1 cut(s) | 957 |
| NdeII | GATC | 8 cut(s) | 36, 225, 343, 510, 608, 675, 854, 1682 |
| NlaIII | CATG | 9 cut(s) | 383, 437, 819, 961, 1156, 1179, 1233, 1272, 1278 |
| NlaIV | GGNNCC | 4 cut(s) | 234, 278, 596, 1077 |
| NmuCI | GTSAC | 4 cut(s) | 253, 811, 882, 1243 |
| NsiI | ATGCAT | 1 cut(s) | 852 |
| NspI | RCATGY | 4 cut(s) | 383, 819, 1156, 1278 |
| PaqCI | CACCTGC | 1 cut(s) | 97 |
| PceI | AGGCCT | 2 cut(s) | 1512, 1548 |
| PciI | ACATGT | 2 cut(s) | 379, 1274 |
| PdmI | GAANNNNTTC | 1 cut(s) | 325 |
| PfeI | GAWTC | 2 cut(s) | 326, 924 |
| PflFI | GACNNNGTC | 1 cut(s) | 87 |
| PfoI | TCCNGGA | 2 cut(s) | 228, 657 |
| PkrI | GCNGC | 4 cut(s) | 8, 147, 1014, 1328 |
| PleI | GAGTC | 1 cut(s) | 469 |
| PpsI | GAGTC | 1 cut(s) | 469 |
| PscI | ACATGT | 2 cut(s) | 379, 1274 |
| PshBI | ATTAAT | 1 cut(s) | 1169 |
| PsiI | TTATAA | 1 cut(s) | 764 |
| Psp124BI | GAGCTC | 1 cut(s) | 369 |
| Psp6I | CCWGG | 3 cut(s) | 228, 657, 1329 |
| PspGI | CCWGG | 3 cut(s) | 228, 657, 1329 |
| PspN4I | GGNNCC | 4 cut(s) | 234, 278, 596, 1077 |
| PspPI | GGNCC | 2 cut(s) | 1280, 1294 |
| PsuI | RGATCY | 1 cut(s) | 510 |
| PsyI | GACNNNGTC | 1 cut(s) | 87 |
| RsaI | GTAC | 4 cut(s) | 930, 1228, 1589, 1625 |
| RsaNI | GTAC | 4 cut(s) | 929, 1227, 1588, 1624 |
| RseI | CAYNNNNRTG | 2 cut(s) | 962, 1273 |
| SacI | GAGCTC | 1 cut(s) | 369 |
| SaqAI | TTAA | 7 cut(s) | 19, 50, 1102, 1132, 1169, 1262, 1355 |
| SatI | GCNGC | 4 cut(s) | 7, 146, 1013, 1327 |
| Sau3AI | GATC | 8 cut(s) | 36, 225, 343, 510, 608, 675, 854, 1682 |
| Sau96I | GGNCC | 2 cut(s) | 1280, 1294 |
| SchI | GAGTC | 1 cut(s) | 469 |
| ScrFI | CCNGG | 3 cut(s) | 230, 659, 1331 |
| SduI | GDGCHC | 1 cut(s) | 369 |
| SfaNI | GCATC | 6 cut(s) | 179, 408, 747, 1034, 1476, 1648 |
| SfcI | CTRYAG | 1 cut(s) | 1239 |
| SinI | GGWCC | 2 cut(s) | 1280, 1294 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 962, 1273 |
| SmlI | CTYRAG | 3 cut(s) | 1101, 1216, 1467 |
| SmoI | CTYRAG | 3 cut(s) | 1101, 1216, 1467 |
| Sse9I | AATT | 7 cut(s) | 41, 72, 239, 1166, 1553, 1692, 1713 |
| SseBI | AGGCCT | 2 cut(s) | 1512, 1548 |
| SsiI | CCGC | 3 cut(s) | 6, 1012, 1015 |
| SspI | AATATT | 1 cut(s) | 1068 |
| SspMI | CTAG | 1 cut(s) | 1523 |
| SstI | GAGCTC | 1 cut(s) | 369 |
| StuI | AGGCCT | 2 cut(s) | 1512, 1548 |
| StyD4I | CCNGG | 3 cut(s) | 228, 657, 1329 |
| StyI | CCWWGG | 3 cut(s) | 957, 1283, 1543 |
| TaaI | ACNGT | 2 cut(s) | 497, 1243 |
| TaiI | ACGT | 1 cut(s) | 1228 |
| TaqI | TCGA | 1 cut(s) | 933 |
| TasI | AATT | 7 cut(s) | 41, 72, 239, 1166, 1553, 1692, 1713 |
| TatI | WGTACW | 1 cut(s) | 1623 |
| TauI | GCSGC | 2 cut(s) | 9, 1015 |
| TfiI | GAWTC | 2 cut(s) | 326, 924 |
| Tru1I | TTAA | 7 cut(s) | 19, 50, 1102, 1132, 1169, 1262, 1355 |
| Tru9I | TTAA | 7 cut(s) | 19, 50, 1102, 1132, 1169, 1262, 1355 |
| TscAI | CASTG | 1 cut(s) | 353 |
| TseFI | GTSAC | 4 cut(s) | 253, 811, 882, 1243 |
| TseI | GCWGC | 2 cut(s) | 145, 1326 |
| Tsp45I | GTSAC | 4 cut(s) | 253, 811, 882, 1243 |
| TspDTI | ATGAA | 5 cut(s) | 68, 422, 537, 685, 754 |
| TspRI | CASTG | 1 cut(s) | 353 |
| Tth111I | GACNNNGTC | 1 cut(s) | 87 |
| Vha464I | CTTAAG | 1 cut(s) | 1101 |
| VpaK11BI | GGWCC | 2 cut(s) | 1280, 1294 |
| VspI | ATTAAT | 1 cut(s) | 1169 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1502 |
| XapI | RAATTY | 1 cut(s) | 72 |
| XceI | RCATGY | 4 cut(s) | 383, 819, 1156, 1278 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 243, 1086 |
| XmnI | GAANNNNTTC | 1 cut(s) | 325 |
| XspI | CTAG | 1 cut(s) | 1523 |
| Zsp2I | ATGCAT | 1 cut(s) | 852 |