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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2258 |
| AarI | CACCTGC | 1 cut(s) | 1180 |
| Acc36I | ACCTGC | 1 cut(s) | 1180 |
| AccB1I | GGYRCC | 1 cut(s) | 1692 |
| AccI | GTMKAC | 1 cut(s) | 800 |
| AclWI | GGATC | 5 cut(s) | 1545, 1558, 1751, 2350, 2363 |
| AcoI | YGGCCR | 1 cut(s) | 2452 |
| AcsI | RAATTY | 1 cut(s) | 890 |
| AcuI | CTGAAG | 2 cut(s) | 726, 996 |
| AfaI | GTAC | 4 cut(s) | 719, 1610, 2157, 2227 |
| AflIII | ACRYGT | 1 cut(s) | 1221 |
| AjnI | CCWGG | 8 cut(s) | 160, 310, 327, 754, 1546, 1699, 1790, 2332 |
| AleI | CACNNNNGTG | 1 cut(s) | 219 |
| Alw21I | GWGCWC | 1 cut(s) | 2032 |
| Alw26I | GTCTC | 3 cut(s) | 413, 467, 2111 |
| AlwI | GGATC | 5 cut(s) | 1545, 1558, 1751, 2350, 2363 |
| AoxI | GGCC | 6 cut(s) | 116, 158, 305, 1655, 2339, 2452 |
| ApoI | RAATTY | 1 cut(s) | 890 |
| AspS9I | GGNCC | 7 cut(s) | 116, 158, 164, 871, 1583, 1973, 2340 |
| AsuC2I | CCSGG | 1 cut(s) | 2272 |
| AsuHPI | GGTGA | 7 cut(s) | 92, 113, 233, 292, 380, 1204, 2084 |
| AsuII | TTCGAA | 1 cut(s) | 1620 |
| AvaII | GGWCC | 4 cut(s) | 164, 871, 1583, 1973 |
| BaeGI | GKGCMC | 1 cut(s) | 1695 |
| BalI | TGGCCA | 1 cut(s) | 2454 |
| BamHI | GGATCC | 2 cut(s) | 1550, 2355 |
| BanI | GGYRCC | 1 cut(s) | 1692 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1601, 1633 |
| BbsI | GAAGAC | 2 cut(s) | 304, 774 |
| Bbv12I | GWGCWC | 1 cut(s) | 2032 |
| BbvCI | CCTCAGC | 1 cut(s) | 1341 |
| BciT130I | CCWGG | 8 cut(s) | 162, 312, 329, 756, 1548, 1701, 1792, 2334 |
| BcnI | CCSGG | 1 cut(s) | 2272 |
| BcoDI | GTCTC | 3 cut(s) | 413, 467, 2111 |
| BfaI | CTAG | 6 cut(s) | 246, 411, 1082, 1253, 1383, 2524 |
| BfuAI | ACCTGC | 1 cut(s) | 1180 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2338 |
| BglII | AGATCT | 1 cut(s) | 1049 |
| BlpI | GCTNAGC | 1 cut(s) | 958 |
| Bme1390I | CCNGG | 9 cut(s) | 162, 312, 329, 756, 1548, 1701, 1792, 2272, 2334 |
| Bme18I | GGWCC | 4 cut(s) | 164, 871, 1583, 1973 |
| BmgT120I | GGNCC | 7 cut(s) | 116, 158, 164, 871, 1583, 1973, 2340 |
| BmiI | GGNNCC | 8 cut(s) | 178, 701, 872, 873, 995, 1552, 1694, 2357 |
| BmrFI | CCNGG | 9 cut(s) | 162, 312, 329, 756, 1548, 1701, 1792, 2272, 2334 |
| BmrI | ACTGGG | 1 cut(s) | 2246 |
| BmsI | GCATC | 7 cut(s) | 587, 832, 996, 1176, 1383, 1640, 1720 |
| BmuI | ACTGGG | 1 cut(s) | 2246 |
| BpiI | GAAGAC | 2 cut(s) | 304, 774 |
| BpmI | CTGGAG | 1 cut(s) | 777 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1341 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 958 |
| Bpu14I | TTCGAA | 1 cut(s) | 1620 |
| BpuMI | CCSGG | 1 cut(s) | 2272 |
| BsaI | GGTCTC | 1 cut(s) | 2111 |
| BsaJI | CCNNGG | 3 cut(s) | 302, 1976, 2271 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 614, 644, 1346, 1376 |
| Bse1I | ACTGG | 6 cut(s) | 800, 1382, 1586, 2068, 2252, 2428 |
| Bse3DI | GCAATG | 2 cut(s) | 1240, 2265 |
| BseBI | CCWGG | 8 cut(s) | 162, 312, 329, 756, 1548, 1701, 1792, 2334 |
| BseDI | CCNNGG | 3 cut(s) | 302, 1976, 2271 |
| BseMI | GCAATG | 2 cut(s) | 1240, 2265 |
| BseMII | CTCAG | 6 cut(s) | 252, 414, 573, 1332, 2152, 2394 |
| BseNI | ACTGG | 6 cut(s) | 800, 1382, 1586, 2068, 2252, 2428 |
| BseRI | GAGGAG | 3 cut(s) | 98, 638, 1358 |
| BseSI | GKGCMC | 1 cut(s) | 1695 |
| BseYI | CCCAGC | 1 cut(s) | 2383 |
| BshFI | GGCC | 6 cut(s) | 118, 160, 307, 1657, 2341, 2454 |
| BshNI | GGYRCC | 1 cut(s) | 1692 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2032 |
| BsiSI | CCGG | 1 cut(s) | 2271 |
| BslFI | GGGAC | 2 cut(s) | 884, 2466 |
| BsmAI | GTCTC | 3 cut(s) | 413, 467, 2111 |
| BsmFI | GGGAC | 2 cut(s) | 884, 2466 |
| BsmI | GAATGC | 1 cut(s) | 1933 |
| BsnI | GGCC | 6 cut(s) | 118, 160, 307, 1657, 2341, 2454 |
| Bso31I | GGTCTC | 1 cut(s) | 2111 |
| Bsp119I | TTCGAA | 1 cut(s) | 1620 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1695, 2032 |
| Bsp1407I | TGTACA | 2 cut(s) | 1608, 2155 |
| Bsp143I | GATC | 5 cut(s) | 196, 1049, 1550, 1743, 2355 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 958 |
| BspANI | GGCC | 6 cut(s) | 118, 160, 307, 1657, 2341, 2454 |
| BspCNI | CTCAG | 6 cut(s) | 253, 415, 574, 1333, 2151, 2395 |
| BspHI | TCATGA | 1 cut(s) | 2209 |
| BspLI | GGNNCC | 8 cut(s) | 178, 701, 872, 873, 995, 1552, 1694, 2357 |
| BspMI | ACCTGC | 1 cut(s) | 1180 |
| BspPI | GGATC | 5 cut(s) | 1545, 1558, 1751, 2350, 2363 |
| BspT104I | TTCGAA | 1 cut(s) | 1620 |
| BspT107I | GGYRCC | 1 cut(s) | 1692 |
| BspTNI | GGTCTC | 1 cut(s) | 2111 |
| BsrDI | GCAATG | 2 cut(s) | 1240, 2265 |
| BsrGI | TGTACA | 2 cut(s) | 1608, 2155 |
| BsrI | ACTGG | 6 cut(s) | 800, 1382, 1586, 2068, 2252, 2428 |
| BssECI | CCNNGG | 3 cut(s) | 302, 1976, 2271 |
| BssMI | GATC | 5 cut(s) | 196, 1049, 1550, 1743, 2355 |
| BssNAI | GTATAC | 1 cut(s) | 801 |
| BssT1I | CCWWGG | 2 cut(s) | 302, 1976 |
| Bst1107I | GTATAC | 1 cut(s) | 801 |
| Bst2UI | CCWGG | 8 cut(s) | 162, 312, 329, 756, 1548, 1701, 1792, 2334 |
| Bst4CI | ACNGT | 2 cut(s) | 1558, 2022 |
| Bst6I | CTCTTC | 5 cut(s) | 339, 387, 489, 507, 677 |
| BstAUI | TGTACA | 2 cut(s) | 1608, 2155 |
| BstBI | TTCGAA | 1 cut(s) | 1620 |
| BstC8I | GCNNGC | 5 cut(s) | 964, 1231, 1627, 1655, 2241 |
| BstEII | GGTNACC | 1 cut(s) | 2378 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1662 |
| BstKTI | GATC | 5 cut(s) | 199, 1052, 1553, 1746, 2358 |
| BstMAI | GTCTC | 3 cut(s) | 413, 467, 2111 |
| BstMBI | GATC | 5 cut(s) | 196, 1049, 1550, 1743, 2355 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 488, 584, 751, 963, 2338, 2393, 2501, 2510 |
| BstNI | CCWGG | 8 cut(s) | 162, 312, 329, 756, 1548, 1701, 1792, 2334 |
| BstNSI | RCATGY | 6 cut(s) | 662, 1159, 1225, 2093, 2118, 2162 |
| BstPI | GGTNACC | 1 cut(s) | 2378 |
| BstSCI | CCNGG | 9 cut(s) | 160, 310, 327, 754, 1546, 1699, 1790, 2270, 2332 |
| BstSLI | GKGCMC | 1 cut(s) | 1695 |
| BstV2I | GAAGAC | 2 cut(s) | 304, 774 |
| BstX2I | RGATCY | 4 cut(s) | 1049, 1550, 1743, 2355 |
| BstYI | RGATCY | 4 cut(s) | 1049, 1550, 1743, 2355 |
| BstZ17I | GTATAC | 1 cut(s) | 801 |
| BsuRI | GGCC | 6 cut(s) | 118, 160, 307, 1657, 2341, 2454 |
| BtsI | GCAGTG | 2 cut(s) | 973, 2100 |
| BtsIMutI | CAGTG | 7 cut(s) | 771, 973, 1554, 1593, 2061, 2100, 2146 |
| BveI | ACCTGC | 1 cut(s) | 1180 |
| Cac8I | GCNNGC | 5 cut(s) | 964, 1231, 1627, 1655, 2241 |
| CciI | TCATGA | 1 cut(s) | 2209 |
| Cfr13I | GGNCC | 7 cut(s) | 116, 158, 164, 871, 1583, 1973, 2340 |
| Csp6I | GTAC | 4 cut(s) | 718, 1609, 2156, 2226 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2431, 2466 |
| CviQI | GTAC | 4 cut(s) | 718, 1609, 2156, 2226 |
| DpnI | GATC | 5 cut(s) | 198, 1051, 1552, 1745, 2357 |
| DpnII | GATC | 5 cut(s) | 196, 1049, 1550, 1743, 2355 |
| DraI | TTTAAA | 2 cut(s) | 319, 592 |
| EaeI | YGGCCR | 1 cut(s) | 2452 |
| Eam1104I | CTCTTC | 5 cut(s) | 339, 387, 489, 507, 677 |
| EarI | CTCTTC | 5 cut(s) | 339, 387, 489, 507, 677 |
| Eco130I | CCWWGG | 2 cut(s) | 302, 1976 |
| Eco147I | AGGCCT | 1 cut(s) | 1657 |
| Eco31I | GGTCTC | 1 cut(s) | 2111 |
| Eco47I | GGWCC | 4 cut(s) | 164, 871, 1583, 1973 |
| Eco57I | CTGAAG | 2 cut(s) | 726, 996 |
| Eco91I | GGTNACC | 1 cut(s) | 2378 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1662 |
| EcoO109I | RGGNCCY | 1 cut(s) | 871 |
| EcoO65I | GGTNACC | 1 cut(s) | 2378 |
| EcoRII | CCWGG | 8 cut(s) | 160, 310, 327, 754, 1546, 1699, 1790, 2332 |
| EcoT14I | CCWWGG | 2 cut(s) | 302, 1976 |
| ErhI | CCWWGG | 2 cut(s) | 302, 1976 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1930, 1962 |
| FaqI | GGGAC | 2 cut(s) | 884, 2466 |
| FauNDI | CATATG | 2 cut(s) | 1613, 1759 |
| FblI | GTMKAC | 1 cut(s) | 800 |
| FspBI | CTAG | 6 cut(s) | 246, 411, 1082, 1253, 1383, 2524 |
| GsaI | CCCAGC | 1 cut(s) | 2387 |
| GsuI | CTGGAG | 1 cut(s) | 777 |
| HaeIII | GGCC | 6 cut(s) | 118, 160, 307, 1657, 2341, 2454 |
| HapII | CCGG | 1 cut(s) | 2271 |
| HincII | GTYRAC | 1 cut(s) | 2296 |
| HindII | GTYRAC | 1 cut(s) | 2296 |
| HindIII | AAGCTT | 1 cut(s) | 1623 |
| HinfI | GANTC | 6 cut(s) | 779, 806, 1144, 1279, 1596, 2178 |
| HpaII | CCGG | 1 cut(s) | 2271 |
| HphI | GGTGA | 7 cut(s) | 92, 113, 233, 292, 380, 1204, 2084 |
| Hpy166II | GTNNAC | 5 cut(s) | 43, 801, 2156, 2226, 2296 |
| Hpy188I | TCNGA | 9 cut(s) | 196, 296, 533, 583, 784, 811, 925, 943, 1752 |
| Hpy188III | TCNNGA | 9 cut(s) | 887, 1003, 1240, 1253, 1270, 1321, 1805, 2182, 2210 |
| Hpy8I | GTNNAC | 5 cut(s) | 43, 801, 2156, 2226, 2296 |
| HpyCH4III | ACNGT | 2 cut(s) | 1558, 2022 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 488, 584, 751, 963, 2338, 2393, 2501, 2510 |
| KflI | GGGWCCC | 1 cut(s) | 871 |
| Kzo9I | GATC | 5 cut(s) | 196, 1049, 1550, 1743, 2355 |
| LmnI | GCTCC | 2 cut(s) | 823, 2401 |
| LweI | GCATC | 7 cut(s) | 587, 832, 996, 1176, 1383, 1640, 1720 |
| MaeI | CTAG | 6 cut(s) | 246, 411, 1082, 1253, 1383, 2524 |
| MaeIII | GTNAC | 6 cut(s) | 791, 1306, 1679, 2059, 2378, 2428 |
| MalI | GATC | 5 cut(s) | 198, 1051, 1552, 1745, 2357 |
| MboI | GATC | 5 cut(s) | 196, 1049, 1550, 1743, 2355 |
| MfeI | CAATTG | 3 cut(s) | 21, 1719, 2304 |
| MflI | RGATCY | 4 cut(s) | 1049, 1550, 1743, 2355 |
| MhlI | GDGCHC | 2 cut(s) | 1695, 2032 |
| MlsI | TGGCCA | 1 cut(s) | 2454 |
| MluNI | TGGCCA | 1 cut(s) | 2454 |
| MmeI | TCCRAC | 6 cut(s) | 378, 600, 646, 930, 1984, 2423 |
| Mox20I | TGGCCA | 1 cut(s) | 2454 |
| MscI | TGGCCA | 1 cut(s) | 2454 |
| MseI | TTAA | 9 cut(s) | 110, 237, 318, 591, 632, 1062, 1535, 1983, 2322 |
| MslI | CAYNNNNRTG | 3 cut(s) | 219, 2037, 2234 |
| Msp20I | TGGCCA | 1 cut(s) | 2454 |
| MspA1I | CMGCKG | 1 cut(s) | 2507 |
| MspI | CCGG | 1 cut(s) | 2271 |
| MspR9I | CCNGG | 9 cut(s) | 162, 312, 329, 756, 1548, 1701, 1792, 2272, 2334 |
| MunI | CAATTG | 3 cut(s) | 21, 1719, 2304 |
| Mva1269I | GAATGC | 1 cut(s) | 1933 |
| MvaI | CCWGG | 8 cut(s) | 162, 312, 329, 756, 1548, 1701, 1792, 2334 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 488, 584, 751, 963, 2338, 2393, 2501, 2510 |
| NciI | CCSGG | 1 cut(s) | 2272 |
| NdeI | CATATG | 2 cut(s) | 1613, 1759 |
| NdeII | GATC | 5 cut(s) | 196, 1049, 1550, 1743, 2355 |
| NlaIV | GGNNCC | 8 cut(s) | 178, 701, 872, 873, 995, 1552, 1694, 2357 |
| NmuCI | GTSAC | 3 cut(s) | 791, 1679, 2059 |
| NspI | RCATGY | 6 cut(s) | 662, 1159, 1225, 2093, 2118, 2162 |
| NspV | TTCGAA | 1 cut(s) | 1620 |
| OliI | CACNNNNGTG | 1 cut(s) | 219 |
| PagI | TCATGA | 1 cut(s) | 2209 |
| PaqCI | CACCTGC | 1 cut(s) | 1180 |
| PceI | AGGCCT | 1 cut(s) | 1657 |
| PciI | ACATGT | 1 cut(s) | 1221 |
| PctI | GAATGC | 1 cut(s) | 1933 |
| PfeI | GAWTC | 6 cut(s) | 779, 806, 1144, 1279, 1596, 2178 |
| PflFI | GACNNNGTC | 1 cut(s) | 168 |
| PfoI | TCCNGGA | 2 cut(s) | 1546, 1699 |
| PpuMI | RGGWCCY | 1 cut(s) | 871 |
| PscI | ACATGT | 1 cut(s) | 1221 |
| PsiI | TTATAA | 1 cut(s) | 2258 |
| Psp5II | RGGWCCY | 1 cut(s) | 871 |
| Psp6I | CCWGG | 8 cut(s) | 160, 310, 327, 754, 1546, 1699, 1790, 2332 |
| PspEI | GGTNACC | 1 cut(s) | 2378 |
| PspFI | CCCAGC | 1 cut(s) | 2383 |
| PspGI | CCWGG | 8 cut(s) | 160, 310, 327, 754, 1546, 1699, 1790, 2332 |
| PspN4I | GGNNCC | 8 cut(s) | 178, 701, 872, 873, 995, 1552, 1694, 2357 |
| PspPI | GGNCC | 7 cut(s) | 116, 158, 164, 871, 1583, 1973, 2340 |
| PspPPI | RGGWCCY | 1 cut(s) | 871 |
| PsuI | RGATCY | 4 cut(s) | 1049, 1550, 1743, 2355 |
| PsyI | GACNNNGTC | 1 cut(s) | 168 |
| PvuII | CAGCTG | 1 cut(s) | 2507 |
| RsaI | GTAC | 4 cut(s) | 719, 1610, 2157, 2227 |
| RsaNI | GTAC | 4 cut(s) | 718, 1609, 2156, 2226 |
| RseI | CAYNNNNRTG | 3 cut(s) | 219, 2037, 2234 |
| SaqAI | TTAA | 9 cut(s) | 110, 237, 318, 591, 632, 1062, 1535, 1983, 2322 |
| Sau3AI | GATC | 5 cut(s) | 196, 1049, 1550, 1743, 2355 |
| Sau96I | GGNCC | 7 cut(s) | 116, 158, 164, 871, 1583, 1973, 2340 |
| ScrFI | CCNGG | 9 cut(s) | 162, 312, 329, 756, 1548, 1701, 1792, 2272, 2334 |
| SduI | GDGCHC | 2 cut(s) | 1695, 2032 |
| SfaNI | GCATC | 7 cut(s) | 587, 832, 996, 1176, 1383, 1640, 1720 |
| SfuI | TTCGAA | 1 cut(s) | 1620 |
| SinI | GGWCC | 4 cut(s) | 164, 871, 1583, 1973 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 219, 2037, 2234 |
| SseBI | AGGCCT | 1 cut(s) | 1657 |
| SspI | AATATT | 1 cut(s) | 1811 |
| SspMI | CTAG | 6 cut(s) | 246, 411, 1082, 1253, 1383, 2524 |
| StuI | AGGCCT | 1 cut(s) | 1657 |
| StyD4I | CCNGG | 9 cut(s) | 160, 310, 327, 754, 1546, 1699, 1790, 2270, 2332 |
| StyI | CCWWGG | 2 cut(s) | 302, 1976 |
| TaaI | ACNGT | 2 cut(s) | 1558, 2022 |
| TaqI | TCGA | 1 cut(s) | 1620 |
| TatI | WGTACW | 2 cut(s) | 1608, 2155 |
| TfiI | GAWTC | 6 cut(s) | 779, 806, 1144, 1279, 1596, 2178 |
| Tru1I | TTAA | 9 cut(s) | 110, 237, 318, 591, 632, 1062, 1535, 1983, 2322 |
| Tru9I | TTAA | 9 cut(s) | 110, 237, 318, 591, 632, 1062, 1535, 1983, 2322 |
| TscAI | CASTG | 7 cut(s) | 778, 973, 1561, 1593, 2068, 2100, 2146 |
| TseFI | GTSAC | 3 cut(s) | 791, 1679, 2059 |
| Tsp45I | GTSAC | 3 cut(s) | 791, 1679, 2059 |
| TspDTI | ATGAA | 6 cut(s) | 417, 831, 870, 924, 1043, 1658 |
| TspRI | CASTG | 7 cut(s) | 778, 973, 1561, 1593, 2068, 2100, 2146 |
| Tth111I | GACNNNGTC | 1 cut(s) | 168 |
| VpaK11BI | GGWCC | 4 cut(s) | 164, 871, 1583, 1973 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1662 |
| XapI | RAATTY | 1 cut(s) | 890 |
| XbaI | TCTAGA | 1 cut(s) | 1252 |
| XceI | RCATGY | 6 cut(s) | 662, 1159, 1225, 2093, 2118, 2162 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 446 |
| XmiI | GTMKAC | 1 cut(s) | 800 |
| XspI | CTAG | 6 cut(s) | 246, 411, 1082, 1253, 1383, 2524 |