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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 329 |
| Acc16I | TGCGCA | 1 cut(s) | 583 |
| Acc36I | ACCTGC | 1 cut(s) | 790 |
| Acc65I | GGTACC | 1 cut(s) | 46 |
| AccB1I | GGYRCC | 3 cut(s) | 46, 490, 716 |
| AccI | GTMKAC | 1 cut(s) | 117 |
| AciI | CCGC | 1 cut(s) | 29 |
| AclWI | GGATC | 6 cut(s) | 20, 245, 579, 668, 989, 1002 |
| AcsI | RAATTY | 1 cut(s) | 18 |
| AfaI | GTAC | 4 cut(s) | 48, 90, 155, 278 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 976 |
| AflIII | ACRYGT | 1 cut(s) | 476 |
| AgsI | TTSAA | 4 cut(s) | 541, 568, 766, 815 |
| AjnI | CCWGG | 1 cut(s) | 553 |
| AluBI | AGCT | 7 cut(s) | 62, 174, 313, 547, 625, 656, 707 |
| AluI | AGCT | 7 cut(s) | 62, 174, 313, 547, 625, 656, 707 |
| Alw26I | GTCTC | 1 cut(s) | 852 |
| AlwI | GGATC | 6 cut(s) | 20, 245, 579, 668, 989, 1002 |
| AoxI | GGCC | 2 cut(s) | 606, 683 |
| ApeKI | GCWGC | 1 cut(s) | 963 |
| ApoI | RAATTY | 1 cut(s) | 18 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 563 |
| Asp718I | GGTACC | 1 cut(s) | 46 |
| AspLEI | GCGC | 1 cut(s) | 584 |
| AspS9I | GGNCC | 3 cut(s) | 646, 684, 880 |
| AsuHPI | GGTGA | 3 cut(s) | 80, 241, 412 |
| AvaII | GGWCC | 2 cut(s) | 646, 880 |
| BamHI | GGATCC | 1 cut(s) | 994 |
| BanI | GGYRCC | 3 cut(s) | 46, 490, 716 |
| BbvI | GCAGC | 1 cut(s) | 975 |
| BccI | CCATC | 2 cut(s) | 215, 419 |
| BciT130I | CCWGG | 1 cut(s) | 555 |
| BcoDI | GTCTC | 1 cut(s) | 852 |
| BfaI | CTAG | 3 cut(s) | 23, 900, 960 |
| BfuAI | ACCTGC | 1 cut(s) | 790 |
| BisI | GCNGC | 1 cut(s) | 964 |
| BlsI | GCNGC | 1 cut(s) | 965 |
| Bme1390I | CCNGG | 1 cut(s) | 555 |
| Bme18I | GGWCC | 2 cut(s) | 646, 880 |
| BmgT120I | GGNCC | 3 cut(s) | 646, 684, 880 |
| BmiI | GGNNCC | 7 cut(s) | 48, 492, 648, 686, 718, 882, 996 |
| BmrFI | CCNGG | 1 cut(s) | 555 |
| BpmI | CTGGAG | 1 cut(s) | 84 |
| BsaAI | YACGTR | 1 cut(s) | 88 |
| BsaJI | CCNNGG | 3 cut(s) | 121, 554, 603 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 976 |
| Bse1I | ACTGG | 2 cut(s) | 39, 278 |
| Bse3DI | GCAATG | 1 cut(s) | 855 |
| BseBI | CCWGG | 1 cut(s) | 555 |
| BseDI | CCNNGG | 3 cut(s) | 121, 554, 603 |
| BseGI | GGATG | 2 cut(s) | 43, 226 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 976 |
| BseMI | GCAATG | 1 cut(s) | 855 |
| BseMII | CTCAG | 1 cut(s) | 237 |
| BseNI | ACTGG | 2 cut(s) | 39, 278 |
| BseXI | GCAGC | 1 cut(s) | 975 |
| BshFI | GGCC | 2 cut(s) | 608, 685 |
| BshNI | GGYRCC | 3 cut(s) | 46, 490, 716 |
| BslFI | GGGAC | 1 cut(s) | 876 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 976 |
| BsmAI | GTCTC | 1 cut(s) | 852 |
| BsmFI | GGGAC | 1 cut(s) | 876 |
| BsnI | GGCC | 2 cut(s) | 608, 685 |
| Bsp143I | GATC | 5 cut(s) | 25, 237, 571, 673, 994 |
| Bsp19I | CCATGG | 2 cut(s) | 121, 603 |
| BspACI | CCGC | 1 cut(s) | 29 |
| BspANI | GGCC | 2 cut(s) | 608, 685 |
| BspCNI | CTCAG | 1 cut(s) | 238 |
| BspLI | GGNNCC | 7 cut(s) | 48, 492, 648, 686, 718, 882, 996 |
| BspMI | ACCTGC | 1 cut(s) | 790 |
| BspPI | GGATC | 6 cut(s) | 20, 245, 579, 668, 989, 1002 |
| BspT107I | GGYRCC | 3 cut(s) | 46, 490, 716 |
| BsrDI | GCAATG | 1 cut(s) | 855 |
| BsrI | ACTGG | 2 cut(s) | 39, 278 |
| BssECI | CCNNGG | 3 cut(s) | 121, 554, 603 |
| BssMI | GATC | 5 cut(s) | 25, 237, 571, 673, 994 |
| BssNAI | GTATAC | 1 cut(s) | 118 |
| BssT1I | CCWWGG | 2 cut(s) | 121, 603 |
| Bst1107I | GTATAC | 1 cut(s) | 118 |
| Bst2UI | CCWGG | 1 cut(s) | 555 |
| Bst4CI | ACNGT | 1 cut(s) | 169 |
| Bst6I | CTCTTC | 2 cut(s) | 833, 850 |
| BstBAI | YACGTR | 1 cut(s) | 88 |
| BstC8I | GCNNGC | 1 cut(s) | 794 |
| BstDEI | CTNAG | 2 cut(s) | 246, 309 |
| BstDSI | CCRYGG | 2 cut(s) | 121, 603 |
| BstF5I | GGATG | 2 cut(s) | 43, 226 |
| BstHHI | GCGC | 1 cut(s) | 584 |
| BstKTI | GATC | 5 cut(s) | 28, 240, 574, 676, 997 |
| BstMAI | GTCTC | 1 cut(s) | 852 |
| BstMBI | GATC | 5 cut(s) | 25, 237, 571, 673, 994 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 691, 963 |
| BstNI | CCWGG | 1 cut(s) | 555 |
| BstNSI | RCATGY | 2 cut(s) | 480, 1006 |
| BstSCI | CCNGG | 1 cut(s) | 553 |
| BstSNI | TACGTA | 1 cut(s) | 88 |
| BstV1I | GCAGC | 1 cut(s) | 975 |
| BstX2I | RGATCY | 3 cut(s) | 25, 673, 994 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 625, 1005 |
| BstYI | RGATCY | 3 cut(s) | 25, 673, 994 |
| BstZ17I | GTATAC | 1 cut(s) | 118 |
| BsuRI | GGCC | 2 cut(s) | 608, 685 |
| BtgI | CCRYGG | 2 cut(s) | 121, 603 |
| BtsCI | GGATG | 2 cut(s) | 43, 226 |
| BtsI | GCAGTG | 2 cut(s) | 295, 436 |
| BtsIMutI | CAGTG | 3 cut(s) | 32, 295, 436 |
| BveI | ACCTGC | 1 cut(s) | 790 |
| Cac8I | GCNNGC | 1 cut(s) | 794 |
| CfoI | GCGC | 1 cut(s) | 584 |
| Cfr13I | GGNCC | 3 cut(s) | 646, 684, 880 |
| Csp6I | GTAC | 4 cut(s) | 47, 89, 154, 277 |
| CviQI | GTAC | 4 cut(s) | 47, 89, 154, 277 |
| DdeI | CTNAG | 2 cut(s) | 246, 309 |
| DpnI | GATC | 5 cut(s) | 27, 239, 573, 675, 996 |
| DpnII | GATC | 5 cut(s) | 25, 237, 571, 673, 994 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 329 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 329 |
| Eam1104I | CTCTTC | 2 cut(s) | 833, 850 |
| EarI | CTCTTC | 2 cut(s) | 833, 850 |
| EciI | GGCGGA | 1 cut(s) | 18 |
| Eco105I | TACGTA | 1 cut(s) | 88 |
| Eco130I | CCWWGG | 2 cut(s) | 121, 603 |
| Eco47I | GGWCC | 2 cut(s) | 646, 880 |
| EcoRII | CCWGG | 1 cut(s) | 553 |
| EcoT14I | CCWWGG | 2 cut(s) | 121, 603 |
| ErhI | CCWWGG | 2 cut(s) | 121, 603 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 453, 485 |
| FaqI | GGGAC | 1 cut(s) | 876 |
| FauNDI | CATATG | 1 cut(s) | 952 |
| FblI | GTMKAC | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 1 cut(s) | 964 |
| FokI | GGATG | 2 cut(s) | 50, 233 |
| Fsp4HI | GCNGC | 1 cut(s) | 964 |
| FspBI | CTAG | 3 cut(s) | 23, 900, 960 |
| FspI | TGCGCA | 1 cut(s) | 583 |
| GlaI | GCGC | 1 cut(s) | 583 |
| GluI | GCNGC | 1 cut(s) | 964 |
| GsuI | CTGGAG | 1 cut(s) | 84 |
| HaeIII | GGCC | 2 cut(s) | 608, 685 |
| HhaI | GCGC | 1 cut(s) | 584 |
| Hin6I | GCGC | 1 cut(s) | 582 |
| HinP1I | GCGC | 1 cut(s) | 582 |
| HincII | GTYRAC | 3 cut(s) | 531, 669, 1011 |
| HindII | GTYRAC | 3 cut(s) | 531, 669, 1011 |
| HindIII | AAGCTT | 1 cut(s) | 654 |
| HinfI | GANTC | 3 cut(s) | 323, 355, 371 |
| HpaI | GTTAAC | 1 cut(s) | 669 |
| HphI | GGTGA | 3 cut(s) | 80, 241, 412 |
| Hpy166II | GTNNAC | 7 cut(s) | 91, 118, 190, 531, 669, 880, 1011 |
| Hpy188I | TCNGA | 3 cut(s) | 247, 338, 451 |
| Hpy188III | TCNNGA | 3 cut(s) | 23, 359, 829 |
| Hpy8I | GTNNAC | 7 cut(s) | 91, 118, 190, 531, 669, 880, 1011 |
| HpyAV | CCTTC | 1 cut(s) | 809 |
| HpyCH4III | ACNGT | 1 cut(s) | 169 |
| HpyCH4IV | ACGT | 1 cut(s) | 87 |
| HpyCH4V | TGCA | 4 cut(s) | 348, 848, 935, 945 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 691, 963 |
| HpyF3I | CTNAG | 2 cut(s) | 246, 309 |
| HpySE526I | ACGT | 1 cut(s) | 87 |
| HspAI | GCGC | 1 cut(s) | 582 |
| KpnI | GGTACC | 1 cut(s) | 50 |
| KspAI | GTTAAC | 1 cut(s) | 669 |
| Kzo9I | GATC | 5 cut(s) | 25, 237, 571, 673, 994 |
| Lsp1109I | GCAGC | 1 cut(s) | 975 |
| MaeI | CTAG | 3 cut(s) | 23, 900, 960 |
| MaeII | ACGT | 1 cut(s) | 87 |
| MaeIII | GTNAC | 1 cut(s) | 68 |
| MalI | GATC | 5 cut(s) | 27, 239, 573, 675, 996 |
| MboI | GATC | 5 cut(s) | 25, 237, 571, 673, 994 |
| MboII | GAAGA | 4 cut(s) | 731, 850, 867, 928 |
| MfeI | CAATTG | 1 cut(s) | 585 |
| MflI | RGATCY | 3 cut(s) | 25, 673, 994 |
| MluCI | AATT | 5 cut(s) | 18, 82, 535, 585, 748 |
| MlyI | GAGTC | 2 cut(s) | 317, 364 |
| MmeI | TCCRAC | 1 cut(s) | 416 |
| MroXI | GAANNNNTTC | 1 cut(s) | 563 |
| MseI | TTAA | 3 cut(s) | 668, 744, 927 |
| MslI | CAYNNNNRTG | 1 cut(s) | 338 |
| MspR9I | CCNGG | 1 cut(s) | 555 |
| MunI | CAATTG | 1 cut(s) | 585 |
| MvaI | CCWGG | 1 cut(s) | 555 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 691, 963 |
| NcoI | CCATGG | 2 cut(s) | 121, 603 |
| NdeI | CATATG | 1 cut(s) | 952 |
| NdeII | GATC | 5 cut(s) | 25, 237, 571, 673, 994 |
| NlaIV | GGNNCC | 7 cut(s) | 48, 492, 648, 686, 718, 882, 996 |
| NmuCI | GTSAC | 1 cut(s) | 68 |
| NsbI | TGCGCA | 1 cut(s) | 583 |
| NspI | RCATGY | 2 cut(s) | 480, 1006 |
| PciI | ACATGT | 1 cut(s) | 476 |
| PdmI | GAANNNNTTC | 1 cut(s) | 563 |
| PfeI | GAWTC | 1 cut(s) | 371 |
| PkrI | GCNGC | 1 cut(s) | 965 |
| PleI | GAGTC | 2 cut(s) | 317, 363 |
| PpsI | GAGTC | 2 cut(s) | 317, 363 |
| Ppu21I | YACGTR | 1 cut(s) | 88 |
| PscI | ACATGT | 1 cut(s) | 476 |
| Psp6I | CCWGG | 1 cut(s) | 553 |
| PspGI | CCWGG | 1 cut(s) | 553 |
| PspN4I | GGNNCC | 7 cut(s) | 48, 492, 648, 686, 718, 882, 996 |
| PspPI | GGNCC | 3 cut(s) | 646, 684, 880 |
| PsuI | RGATCY | 3 cut(s) | 25, 673, 994 |
| RsaI | GTAC | 4 cut(s) | 48, 90, 155, 278 |
| RsaNI | GTAC | 4 cut(s) | 47, 89, 154, 277 |
| RseI | CAYNNNNRTG | 1 cut(s) | 338 |
| SaqAI | TTAA | 3 cut(s) | 668, 744, 927 |
| SatI | GCNGC | 1 cut(s) | 964 |
| Sau3AI | GATC | 5 cut(s) | 25, 237, 571, 673, 994 |
| Sau96I | GGNCC | 3 cut(s) | 646, 684, 880 |
| SchI | GAGTC | 2 cut(s) | 317, 364 |
| ScrFI | CCNGG | 1 cut(s) | 555 |
| SinI | GGWCC | 2 cut(s) | 646, 880 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 338 |
| SnaBI | TACGTA | 1 cut(s) | 88 |
| Sse9I | AATT | 5 cut(s) | 18, 82, 535, 585, 748 |
| SsiI | CCGC | 1 cut(s) | 29 |
| SspMI | CTAG | 3 cut(s) | 23, 900, 960 |
| StyD4I | CCNGG | 1 cut(s) | 553 |
| StyI | CCWWGG | 2 cut(s) | 121, 603 |
| TaaI | ACNGT | 1 cut(s) | 169 |
| TaiI | ACGT | 1 cut(s) | 90 |
| TaqI | TCGA | 2 cut(s) | 57, 326 |
| TasI | AATT | 5 cut(s) | 18, 82, 535, 585, 748 |
| TatI | WGTACW | 1 cut(s) | 153 |
| TfiI | GAWTC | 1 cut(s) | 371 |
| Tru1I | TTAA | 3 cut(s) | 668, 744, 927 |
| Tru9I | TTAA | 3 cut(s) | 668, 744, 927 |
| TscAI | CASTG | 3 cut(s) | 39, 295, 436 |
| TseFI | GTSAC | 1 cut(s) | 68 |
| TseI | GCWGC | 1 cut(s) | 963 |
| Tsp45I | GTSAC | 1 cut(s) | 68 |
| TspDTI | ATGAA | 6 cut(s) | 54, 363, 433, 650, 795, 851 |
| TspRI | CASTG | 3 cut(s) | 39, 295, 436 |
| VpaK11BI | GGWCC | 2 cut(s) | 646, 880 |
| XapI | RAATTY | 1 cut(s) | 18 |
| XbaI | TCTAGA | 1 cut(s) | 22 |
| XceI | RCATGY | 2 cut(s) | 480, 1006 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 39 |
| XmiI | GTMKAC | 1 cut(s) | 117 |
| XmnI | GAANNNNTTC | 1 cut(s) | 563 |
| XspI | CTAG | 3 cut(s) | 23, 900, 960 |