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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 920 |
| AccI | GTMKAC | 1 cut(s) | 913 |
| AciI | CCGC | 2 cut(s) | 73, 728 |
| AclWI | GGATC | 3 cut(s) | 52, 443, 1077 |
| AcsI | RAATTY | 1 cut(s) | 1033 |
| AcuI | CTGAAG | 1 cut(s) | 471 |
| AfaI | GTAC | 3 cut(s) | 108, 1062, 1157 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 262 |
| AflIII | ACRYGT | 1 cut(s) | 1169 |
| AgsI | TTSAA | 5 cut(s) | 23, 157, 682, 980, 1182 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 24, 56 |
| AluBI | AGCT | 8 cut(s) | 304, 442, 607, 707, 790, 800, 892, 1045 |
| AluI | AGCT | 8 cut(s) | 304, 442, 607, 707, 790, 800, 892, 1045 |
| Alw21I | GWGCWC | 2 cut(s) | 306, 709 |
| Alw26I | GTCTC | 1 cut(s) | 511 |
| AlwI | GGATC | 3 cut(s) | 52, 443, 1077 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 453 |
| AoxI | GGCC | 1 cut(s) | 74 |
| ApeKI | GCWGC | 2 cut(s) | 177, 539 |
| ApoI | RAATTY | 1 cut(s) | 1033 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 281, 313 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 987 |
| AspLEI | GCGC | 1 cut(s) | 1020 |
| AspS9I | GGNCC | 2 cut(s) | 145, 619 |
| AsuC2I | CCSGG | 2 cut(s) | 149, 1053 |
| AsuHPI | GGTGA | 3 cut(s) | 107, 277, 844 |
| AvaII | GGWCC | 2 cut(s) | 145, 619 |
| BanII | GRGCYC | 2 cut(s) | 306, 709 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 90, 122 |
| BauI | CACGAG | 1 cut(s) | 871 |
| BbsI | GAAGAC | 2 cut(s) | 145, 477 |
| Bbv12I | GWGCWC | 2 cut(s) | 306, 709 |
| BbvI | GCAGC | 2 cut(s) | 189, 551 |
| BccI | CCATC | 6 cut(s) | 86, 218, 511, 572, 850, 917 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 290, 324 |
| BclI | TGATCA | 1 cut(s) | 342 |
| BcnI | CCSGG | 2 cut(s) | 149, 1053 |
| BcoDI | GTCTC | 1 cut(s) | 511 |
| BfaI | CTAG | 4 cut(s) | 128, 315, 752, 887 |
| BfuAI | ACCTGC | 1 cut(s) | 920 |
| BisI | GCNGC | 3 cut(s) | 74, 178, 540 |
| BlsI | GCNGC | 3 cut(s) | 75, 179, 541 |
| BmcAI | AGTACT | 1 cut(s) | 108 |
| Bme1390I | CCNGG | 2 cut(s) | 149, 1053 |
| Bme18I | GGWCC | 2 cut(s) | 145, 619 |
| BmgT120I | GGNCC | 2 cut(s) | 145, 619 |
| BmiI | GGNNCC | 4 cut(s) | 147, 562, 621, 884 |
| BmrFI | CCNGG | 2 cut(s) | 149, 1053 |
| BmsI | GCATC | 3 cut(s) | 309, 320, 802 |
| BpiI | GAAGAC | 2 cut(s) | 145, 477 |
| BpuEI | CTTGAG | 1 cut(s) | 938 |
| BpuMI | CCSGG | 2 cut(s) | 149, 1053 |
| BsaAI | YACGTR | 1 cut(s) | 1172 |
| BsaI | GGTCTC | 1 cut(s) | 511 |
| BsaJI | CCNNGG | 1 cut(s) | 468 |
| BsaWI | WCCGGW | 1 cut(s) | 255 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 262 |
| Bse3DI | GCAATG | 1 cut(s) | 852 |
| BseDI | CCNNGG | 1 cut(s) | 468 |
| BseGI | GGATG | 6 cut(s) | 171, 324, 693, 737, 928, 1170 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 262 |
| BseMI | GCAATG | 1 cut(s) | 852 |
| BseMII | CTCAG | 3 cut(s) | 108, 412, 899 |
| BseRI | GAGGAG | 1 cut(s) | 1142 |
| BseXI | GCAGC | 2 cut(s) | 189, 551 |
| BshFI | GGCC | 1 cut(s) | 76 |
| BsiHKAI | GWGCWC | 2 cut(s) | 306, 709 |
| BsiSI | CCGG | 4 cut(s) | 149, 256, 359, 1052 |
| BslFI | GGGAC | 1 cut(s) | 268 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 262 |
| BsmAI | GTCTC | 1 cut(s) | 511 |
| BsmFI | GGGAC | 1 cut(s) | 268 |
| BsnI | GGCC | 1 cut(s) | 76 |
| Bso31I | GGTCTC | 1 cut(s) | 511 |
| Bsp1286I | GDGCHC | 2 cut(s) | 306, 709 |
| Bsp143I | GATC | 5 cut(s) | 25, 44, 342, 435, 1069 |
| BspACI | CCGC | 2 cut(s) | 73, 728 |
| BspANI | GGCC | 1 cut(s) | 76 |
| BspCNI | CTCAG | 3 cut(s) | 109, 411, 900 |
| BspHI | TCATGA | 1 cut(s) | 28 |
| BspLI | GGNNCC | 4 cut(s) | 147, 562, 621, 884 |
| BspMI | ACCTGC | 1 cut(s) | 920 |
| BspPI | GGATC | 3 cut(s) | 52, 443, 1077 |
| BspTNI | GGTCTC | 1 cut(s) | 511 |
| BsrDI | GCAATG | 1 cut(s) | 852 |
| BssECI | CCNNGG | 1 cut(s) | 468 |
| BssMI | GATC | 5 cut(s) | 25, 44, 342, 435, 1069 |
| BssNAI | GTATAC | 1 cut(s) | 914 |
| BssSI | CACGAG | 1 cut(s) | 871 |
| BssT1I | CCWWGG | 1 cut(s) | 468 |
| Bst1107I | GTATAC | 1 cut(s) | 914 |
| Bst2BI | CACGAG | 1 cut(s) | 871 |
| Bst4CI | ACNGT | 4 cut(s) | 293, 449, 634, 758 |
| Bst6I | CTCTTC | 2 cut(s) | 57, 93 |
| BstBAI | YACGTR | 1 cut(s) | 1172 |
| BstC8I | GCNNGC | 2 cut(s) | 78, 395 |
| BstDEI | CTNAG | 5 cut(s) | 117, 398, 405, 417, 908 |
| BstF5I | GGATG | 6 cut(s) | 171, 324, 693, 737, 928, 1170 |
| BstHHI | GCGC | 1 cut(s) | 1020 |
| BstKTI | GATC | 5 cut(s) | 28, 47, 345, 438, 1072 |
| BstMAI | GTCTC | 1 cut(s) | 511 |
| BstMBI | GATC | 5 cut(s) | 25, 44, 342, 435, 1069 |
| BstNSI | RCATGY | 1 cut(s) | 397 |
| BstSCI | CCNGG | 2 cut(s) | 147, 1051 |
| BstV1I | GCAGC | 2 cut(s) | 189, 551 |
| BstV2I | GAAGAC | 2 cut(s) | 145, 477 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 517 |
| BstZ17I | GTATAC | 1 cut(s) | 914 |
| BsuRI | GGCC | 1 cut(s) | 76 |
| BtsCI | GGATG | 6 cut(s) | 171, 324, 693, 737, 928, 1170 |
| BtsIMutI | CAGTG | 2 cut(s) | 406, 454 |
| BveI | ACCTGC | 1 cut(s) | 920 |
| Cac8I | GCNNGC | 2 cut(s) | 78, 395 |
| CaiI | CAGNNNCTG | 1 cut(s) | 453 |
| CciI | TCATGA | 1 cut(s) | 28 |
| CfoI | GCGC | 1 cut(s) | 1020 |
| Cfr13I | GGNCC | 2 cut(s) | 145, 619 |
| Csp6I | GTAC | 3 cut(s) | 107, 1061, 1156 |
| CviAII | CATG | 7 cut(s) | 29, 326, 373, 394, 427, 568, 828 |
| CviQI | GTAC | 3 cut(s) | 107, 1061, 1156 |
| DdeI | CTNAG | 5 cut(s) | 117, 398, 405, 417, 908 |
| DpnI | GATC | 5 cut(s) | 27, 46, 344, 437, 1071 |
| DpnII | GATC | 5 cut(s) | 25, 44, 342, 435, 1069 |
| DraI | TTTAAA | 1 cut(s) | 724 |
| Eam1104I | CTCTTC | 2 cut(s) | 57, 93 |
| EarI | CTCTTC | 2 cut(s) | 57, 93 |
| Ecl136II | GAGCTC | 2 cut(s) | 304, 707 |
| Eco130I | CCWWGG | 1 cut(s) | 468 |
| Eco24I | GRGCYC | 2 cut(s) | 306, 709 |
| Eco31I | GGTCTC | 1 cut(s) | 511 |
| Eco47I | GGWCC | 2 cut(s) | 145, 619 |
| Eco53kI | GAGCTC | 2 cut(s) | 304, 707 |
| Eco57I | CTGAAG | 1 cut(s) | 471 |
| EcoICRI | GAGCTC | 2 cut(s) | 304, 707 |
| EcoO109I | RGGNCCY | 1 cut(s) | 145 |
| EcoT14I | CCWWGG | 1 cut(s) | 468 |
| EcoT22I | ATGCAT | 1 cut(s) | 313 |
| EcoT38I | GRGCYC | 2 cut(s) | 306, 709 |
| ErhI | CCWWGG | 1 cut(s) | 468 |
| FaeI | CATG | 7 cut(s) | 32, 329, 376, 397, 430, 571, 831 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 528, 560 |
| FaqI | GGGAC | 1 cut(s) | 268 |
| FatI | CATG | 7 cut(s) | 28, 325, 372, 393, 426, 567, 827 |
| FauI | CCCGC | 1 cut(s) | 721 |
| FauNDI | CATATG | 2 cut(s) | 778, 1023 |
| FbaI | TGATCA | 1 cut(s) | 342 |
| FblI | GTMKAC | 1 cut(s) | 913 |
| Fnu4HI | GCNGC | 3 cut(s) | 74, 178, 540 |
| FokI | GGATG | 6 cut(s) | 178, 331, 700, 744, 935, 1177 |
| FriOI | GRGCYC | 2 cut(s) | 306, 709 |
| Fsp4HI | GCNGC | 3 cut(s) | 74, 178, 540 |
| FspBI | CTAG | 4 cut(s) | 128, 315, 752, 887 |
| GlaI | GCGC | 1 cut(s) | 1019 |
| GluI | GCNGC | 3 cut(s) | 74, 178, 540 |
| HaeIII | GGCC | 1 cut(s) | 76 |
| HapII | CCGG | 4 cut(s) | 149, 256, 359, 1052 |
| HhaI | GCGC | 1 cut(s) | 1020 |
| Hin1II | CATG | 7 cut(s) | 32, 329, 376, 397, 430, 571, 831 |
| Hin6I | GCGC | 1 cut(s) | 1018 |
| HinP1I | GCGC | 1 cut(s) | 1018 |
| HincII | GTYRAC | 2 cut(s) | 637, 1095 |
| HindII | GTYRAC | 2 cut(s) | 637, 1095 |
| HinfI | GANTC | 6 cut(s) | 53, 86, 332, 378, 464, 869 |
| HpaII | CCGG | 4 cut(s) | 149, 256, 359, 1052 |
| HphI | GGTGA | 3 cut(s) | 107, 277, 844 |
| Hpy166II | GTNNAC | 6 cut(s) | 619, 637, 914, 1029, 1095, 1187 |
| Hpy188I | TCNGA | 4 cut(s) | 58, 91, 490, 516 |
| Hpy188III | TCNNGA | 7 cut(s) | 29, 128, 157, 346, 590, 682, 793 |
| Hpy8I | GTNNAC | 6 cut(s) | 619, 637, 914, 1029, 1095, 1187 |
| HpyAV | CCTTC | 4 cut(s) | 136, 633, 680, 1129 |
| HpyCH4III | ACNGT | 4 cut(s) | 293, 449, 634, 758 |
| HpyCH4IV | ACGT | 1 cut(s) | 1171 |
| HpyCH4V | TGCA | 8 cut(s) | 279, 311, 322, 372, 776, 900, 1088, 1115 |
| HpyF3I | CTNAG | 5 cut(s) | 117, 398, 405, 417, 908 |
| HpySE526I | ACGT | 1 cut(s) | 1171 |
| Hsp92II | CATG | 7 cut(s) | 32, 329, 376, 397, 430, 571, 831 |
| HspAI | GCGC | 1 cut(s) | 1018 |
| Ksp22I | TGATCA | 1 cut(s) | 342 |
| Kzo9I | GATC | 5 cut(s) | 25, 44, 342, 435, 1069 |
| LmnI | GCTCC | 3 cut(s) | 571, 704, 926 |
| Lsp1109I | GCAGC | 2 cut(s) | 189, 551 |
| LweI | GCATC | 3 cut(s) | 309, 320, 802 |
| MaeI | CTAG | 4 cut(s) | 128, 315, 752, 887 |
| MaeII | ACGT | 1 cut(s) | 1171 |
| MalI | GATC | 5 cut(s) | 27, 46, 344, 437, 1071 |
| MboI | GATC | 5 cut(s) | 25, 44, 342, 435, 1069 |
| MboII | GAAGA | 7 cut(s) | 35, 44, 74, 110, 145, 477, 992 |
| MhlI | GDGCHC | 2 cut(s) | 306, 709 |
| MluCI | AATT | 1 cut(s) | 1033 |
| MlyI | GAGTC | 3 cut(s) | 62, 387, 863 |
| MmeI | TCCRAC | 2 cut(s) | 534, 914 |
| Mph1103I | ATGCAT | 1 cut(s) | 313 |
| MroXI | GAANNNNTTC | 1 cut(s) | 987 |
| MseI | TTAA | 4 cut(s) | 123, 413, 723, 965 |
| MspI | CCGG | 4 cut(s) | 149, 256, 359, 1052 |
| MspR9I | CCNGG | 2 cut(s) | 149, 1053 |
| NciI | CCSGG | 2 cut(s) | 149, 1053 |
| NdeI | CATATG | 2 cut(s) | 778, 1023 |
| NdeII | GATC | 5 cut(s) | 25, 44, 342, 435, 1069 |
| NlaIII | CATG | 7 cut(s) | 32, 329, 376, 397, 430, 571, 831 |
| NlaIV | GGNNCC | 4 cut(s) | 147, 562, 621, 884 |
| NmeAIII | GCCGAG | 1 cut(s) | 76 |
| NsiI | ATGCAT | 1 cut(s) | 313 |
| NspI | RCATGY | 1 cut(s) | 397 |
| PaeI | GCATGC | 1 cut(s) | 397 |
| PagI | TCATGA | 1 cut(s) | 28 |
| PdmI | GAANNNNTTC | 1 cut(s) | 987 |
| PfeI | GAWTC | 3 cut(s) | 86, 332, 464 |
| PflFI | GACNNNGTC | 1 cut(s) | 149 |
| PfoI | TCCNGGA | 1 cut(s) | 1051 |
| PkrI | GCNGC | 3 cut(s) | 75, 179, 541 |
| PleI | GAGTC | 3 cut(s) | 61, 386, 863 |
| PpsI | GAGTC | 3 cut(s) | 61, 386, 863 |
| Ppu21I | YACGTR | 1 cut(s) | 1172 |
| PpuMI | RGGWCCY | 1 cut(s) | 145 |
| Psp124BI | GAGCTC | 2 cut(s) | 306, 709 |
| Psp5II | RGGWCCY | 1 cut(s) | 145 |
| PspN4I | GGNNCC | 4 cut(s) | 147, 562, 621, 884 |
| PspPI | GGNCC | 2 cut(s) | 145, 619 |
| PspPPI | RGGWCCY | 1 cut(s) | 145 |
| PstNI | CAGNNNCTG | 1 cut(s) | 453 |
| PsyI | GACNNNGTC | 1 cut(s) | 149 |
| RsaI | GTAC | 3 cut(s) | 108, 1062, 1157 |
| RsaNI | GTAC | 3 cut(s) | 107, 1061, 1156 |
| SacI | GAGCTC | 2 cut(s) | 306, 709 |
| SaqAI | TTAA | 4 cut(s) | 123, 413, 723, 965 |
| SatI | GCNGC | 3 cut(s) | 74, 178, 540 |
| Sau3AI | GATC | 5 cut(s) | 25, 44, 342, 435, 1069 |
| Sau96I | GGNCC | 2 cut(s) | 145, 619 |
| ScaI | AGTACT | 1 cut(s) | 108 |
| SchI | GAGTC | 3 cut(s) | 62, 387, 863 |
| ScrFI | CCNGG | 2 cut(s) | 149, 1053 |
| SduI | GDGCHC | 2 cut(s) | 306, 709 |
| SfaNI | GCATC | 3 cut(s) | 309, 320, 802 |
| SinI | GGWCC | 2 cut(s) | 145, 619 |
| SmlI | CTYRAG | 1 cut(s) | 917 |
| SmoI | CTYRAG | 1 cut(s) | 917 |
| SphI | GCATGC | 1 cut(s) | 397 |
| Sse9I | AATT | 1 cut(s) | 1033 |
| SsiI | CCGC | 2 cut(s) | 73, 728 |
| SspI | AATATT | 1 cut(s) | 678 |
| SspMI | CTAG | 4 cut(s) | 128, 315, 752, 887 |
| SstI | GAGCTC | 2 cut(s) | 306, 709 |
| StyD4I | CCNGG | 2 cut(s) | 147, 1051 |
| StyI | CCWWGG | 1 cut(s) | 468 |
| TaaI | ACNGT | 4 cut(s) | 293, 449, 634, 758 |
| TaiI | ACGT | 1 cut(s) | 1174 |
| TaqI | TCGA | 3 cut(s) | 300, 526, 589 |
| TasI | AATT | 1 cut(s) | 1033 |
| TatI | WGTACW | 1 cut(s) | 106 |
| TauI | GCSGC | 1 cut(s) | 76 |
| TfiI | GAWTC | 3 cut(s) | 86, 332, 464 |
| Tru1I | TTAA | 4 cut(s) | 123, 413, 723, 965 |
| Tru9I | TTAA | 4 cut(s) | 123, 413, 723, 965 |
| TscAI | CASTG | 2 cut(s) | 406, 454 |
| TseI | GCWGC | 2 cut(s) | 177, 539 |
| TspDTI | ATGAA | 8 cut(s) | 45, 75, 155, 415, 816, 931, 1148, 1164 |
| TspRI | CASTG | 2 cut(s) | 406, 454 |
| Tth111I | GACNNNGTC | 1 cut(s) | 149 |
| VpaK11BI | GGWCC | 2 cut(s) | 145, 619 |
| XapI | RAATTY | 1 cut(s) | 1033 |
| XbaI | TCTAGA | 1 cut(s) | 127 |
| XceI | RCATGY | 1 cut(s) | 397 |
| XmiI | GTMKAC | 1 cut(s) | 913 |
| XmnI | GAANNNNTTC | 1 cut(s) | 987 |
| XspI | CTAG | 4 cut(s) | 128, 315, 752, 887 |
| ZrmI | AGTACT | 1 cut(s) | 108 |
| Zsp2I | ATGCAT | 1 cut(s) | 313 |