No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PB1-like | PF26130 | 2 - 90 | 1.2e-08 | PB1-like domain |
| DBD_Tnp_Mut | PF03108 | 334 - 394 | 5.9e-09 | MuDR family transposase |
| MULE | PF10551 | 527 - 623 | 2.2e-14 | MULE transposase domain |
| Transposase_mut | PF00872 | 542 - 632 | 5.8e-06 | Transposase, Mutator family |
| SWIM | PF04434 | 782 - 811 | 6e-09 | SWIM zinc finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 500 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2485 |
| Acc36I | ACCTGC | 3 cut(s) | 700, 1757, 2372 |
| AccB1I | GGYRCC | 1 cut(s) | 2267 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 137, 2031 |
| AccI | GTMKAC | 1 cut(s) | 1074 |
| AccIII | TCCGGA | 1 cut(s) | 2443 |
| AciI | CCGC | 2 cut(s) | 851, 2271 |
| AclWI | GGATC | 5 cut(s) | 370, 437, 1502, 1515, 1914 |
| AcoI | YGGCCR | 2 cut(s) | 1621, 2698 |
| AcsI | RAATTY | 5 cut(s) | 202, 854, 922, 2884, 2891 |
| AdeI | CACNNNGTG | 1 cut(s) | 2707 |
| AfaI | GTAC | 6 cut(s) | 240, 320, 487, 1176, 1247, 2604 |
| AfeI | AGCGCT | 2 cut(s) | 1240, 1259 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 137, 2031, 2519, 2807 |
| AflII | CTTAAG | 1 cut(s) | 2672 |
| AflIII | ACRYGT | 4 cut(s) | 321, 2054, 2484, 2714 |
| AjnI | CCWGG | 3 cut(s) | 907, 1888, 2806 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 752, 784, 861, 893 |
| AleI | CACNNNNGTG | 1 cut(s) | 2674 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1499, 1531 |
| Alw21I | GWGCWC | 4 cut(s) | 390, 1143, 1546, 2044 |
| Alw26I | GTCTC | 3 cut(s) | 458, 1348, 2419 |
| AlwI | GGATC | 5 cut(s) | 370, 437, 1502, 1515, 1914 |
| Aor13HI | TCCGGA | 1 cut(s) | 2443 |
| Aor51HI | AGCGCT | 2 cut(s) | 1240, 1259 |
| AoxI | GGCC | 6 cut(s) | 911, 1621, 2018, 2550, 2591, 2698 |
| ApeKI | GCWGC | 5 cut(s) | 534, 1159, 1376, 1975, 2750 |
| ApoI | RAATTY | 5 cut(s) | 202, 854, 922, 2884, 2891 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1288, 1306, 1320, 1338 |
| AseI | ATTAAT | 1 cut(s) | 2517 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 26, 172 |
| AspLEI | GCGC | 2 cut(s) | 1241, 1260 |
| AspS9I | GGNCC | 4 cut(s) | 800, 911, 1456, 1741 |
| AsuC2I | CCSGG | 1 cut(s) | 2586 |
| AsuHPI | GGTGA | 6 cut(s) | 299, 388, 800, 944, 2272, 2312 |
| AsuII | TTCGAA | 1 cut(s) | 2060 |
| AvaII | GGWCC | 3 cut(s) | 800, 1456, 1741 |
| AxyI | CCTNAGG | 1 cut(s) | 588 |
| BaeGI | GKGCMC | 1 cut(s) | 1123 |
| BalI | TGGCCA | 2 cut(s) | 1623, 2700 |
| BamHI | GGATCC | 1 cut(s) | 1507 |
| BanI | GGYRCC | 1 cut(s) | 2267 |
| BanII | GRGCYC | 3 cut(s) | 390, 1143, 1546 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 672, 704 |
| BbsI | GAAGAC | 5 cut(s) | 300, 687, 1301, 1314, 2454 |
| Bbv12I | GWGCWC | 4 cut(s) | 390, 1143, 1546, 2044 |
| BbvI | GCAGC | 5 cut(s) | 546, 1171, 1388, 1962, 2737 |
| BccI | CCATC | 8 cut(s) | 923, 1055, 1284, 1348, 1586, 1754, 1837, 1839 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2018, 2052 |
| BciT130I | CCWGG | 3 cut(s) | 909, 1890, 2808 |
| BciVI | GTATCC | 2 cut(s) | 336, 2172 |
| BclI | TGATCA | 2 cut(s) | 2076, 2472 |
| BcnI | CCSGG | 1 cut(s) | 2586 |
| BcoDI | GTCTC | 3 cut(s) | 458, 1348, 2419 |
| BfaI | CTAG | 9 cut(s) | 269, 402, 468, 594, 624, 1152, 1212, 2121, 2246 |
| BfoI | RGCGCY | 2 cut(s) | 1242, 1261 |
| BfrI | CTTAAG | 1 cut(s) | 2672 |
| BfuAI | ACCTGC | 3 cut(s) | 700, 1757, 2372 |
| BfuI | GTATCC | 2 cut(s) | 336, 2172 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1385, 2590 |
| BglII | AGATCT | 2 cut(s) | 54, 1574 |
| BisI | GCNGC | 6 cut(s) | 535, 1160, 1377, 1976, 2271, 2751 |
| BlsI | GCNGC | 6 cut(s) | 536, 1161, 1378, 1977, 2272, 2752 |
| BmcAI | AGTACT | 2 cut(s) | 487, 1247 |
| Bme1390I | CCNGG | 4 cut(s) | 909, 1890, 2586, 2808 |
| Bme18I | GGWCC | 3 cut(s) | 800, 1456, 1741 |
| BmgT120I | GGNCC | 4 cut(s) | 800, 911, 1456, 1741 |
| BmiI | GGNNCC | 4 cut(s) | 801, 1458, 1509, 2269 |
| BmrFI | CCNGG | 4 cut(s) | 909, 1890, 2586, 2808 |
| BmsI | GCATC | 9 cut(s) | 175, 538, 1157, 1639, 1995, 2190, 2605, 2627, 2734 |
| BpiI | GAAGAC | 5 cut(s) | 300, 687, 1301, 1314, 2454 |
| Bpu14I | TTCGAA | 1 cut(s) | 2060 |
| BpuMI | CCSGG | 1 cut(s) | 2586 |
| BsaAI | YACGTR | 1 cut(s) | 73 |
| BsaBI | GATNNNNATC | 1 cut(s) | 552 |
| BsaI | GGTCTC | 1 cut(s) | 1348 |
| BsaJI | CCNNGG | 5 cut(s) | 99, 225, 908, 1683, 1889 |
| BsaWI | WCCGGW | 2 cut(s) | 1510, 2443 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2527, 2557 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 137, 2031, 2519, 2807 |
| Bse1I | ACTGG | 4 cut(s) | 373, 493, 986, 1291 |
| Bse21I | CCTNAGG | 1 cut(s) | 588 |
| Bse8I | GATNNNNATC | 1 cut(s) | 552 |
| BseAI | TCCGGA | 1 cut(s) | 2443 |
| BseBI | CCWGG | 3 cut(s) | 909, 1890, 2808 |
| BseDI | CCNNGG | 5 cut(s) | 99, 225, 908, 1683, 1889 |
| BseJI | GATNNNNATC | 1 cut(s) | 552 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 137, 2031, 2519, 2807 |
| BseMII | CTCAG | 4 cut(s) | 579, 1325, 1759, 2810 |
| BseNI | ACTGG | 4 cut(s) | 373, 493, 986, 1291 |
| BseRI | GAGGAG | 3 cut(s) | 320, 443, 671 |
| BseSI | GKGCMC | 1 cut(s) | 1123 |
| BseXI | GCAGC | 5 cut(s) | 546, 1171, 1388, 1962, 2737 |
| BsgI | GTGCAG | 1 cut(s) | 2350 |
| BshFI | GGCC | 6 cut(s) | 913, 1623, 2020, 2552, 2593, 2700 |
| BshNI | GGYRCC | 1 cut(s) | 2267 |
| BsiHKAI | GWGCWC | 4 cut(s) | 390, 1143, 1546, 2044 |
| BsiSI | CCGG | 3 cut(s) | 1511, 2444, 2586 |
| BslFI | GGGAC | 1 cut(s) | 813 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 137, 2031, 2519, 2807 |
| BsmAI | GTCTC | 3 cut(s) | 458, 1348, 2419 |
| BsmFI | GGGAC | 1 cut(s) | 813 |
| BsmI | GAATGC | 2 cut(s) | 1161, 2752 |
| BsnI | GGCC | 6 cut(s) | 913, 1623, 2020, 2552, 2593, 2700 |
| Bso31I | GGTCTC | 1 cut(s) | 1348 |
| Bsp119I | TTCGAA | 1 cut(s) | 2060 |
| Bsp1286I | GDGCHC | 5 cut(s) | 390, 1123, 1143, 1546, 2044 |
| Bsp13I | TCCGGA | 1 cut(s) | 2443 |
| Bsp1407I | TGTACA | 2 cut(s) | 318, 1174 |
| Bsp19I | CCATGG | 2 cut(s) | 225, 1683 |
| BspACI | CCGC | 2 cut(s) | 851, 2271 |
| BspANI | GGCC | 6 cut(s) | 913, 1623, 2020, 2552, 2593, 2700 |
| BspCNI | CTCAG | 4 cut(s) | 580, 1324, 1758, 2809 |
| BspEI | TCCGGA | 1 cut(s) | 2443 |
| BspLI | GGNNCC | 4 cut(s) | 801, 1458, 1509, 2269 |
| BspMI | ACCTGC | 3 cut(s) | 700, 1757, 2372 |
| BspPI | GGATC | 5 cut(s) | 370, 437, 1502, 1515, 1914 |
| BspQI | GCTCTTC | 1 cut(s) | 378 |
| BspT104I | TTCGAA | 1 cut(s) | 2060 |
| BspT107I | GGYRCC | 1 cut(s) | 2267 |
| BspTI | CTTAAG | 1 cut(s) | 2672 |
| BspTNI | GGTCTC | 1 cut(s) | 1348 |
| BsrGI | TGTACA | 2 cut(s) | 318, 1174 |
| BsrI | ACTGG | 4 cut(s) | 373, 493, 986, 1291 |
| BssECI | CCNNGG | 5 cut(s) | 99, 225, 908, 1683, 1889 |
| BssT1I | CCWWGG | 2 cut(s) | 225, 1683 |
| Bst2UI | CCWGG | 3 cut(s) | 909, 1890, 2808 |
| Bst4CI | ACNGT | 9 cut(s) | 582, 1709, 2066, 2105, 2184, 2571, 2602, 2687, 2777 |
| Bst6I | CTCTTC | 8 cut(s) | 378, 864, 930, 1812, 2168, 2541, 2686, 2756 |
| BstAFI | CTTAAG | 1 cut(s) | 2672 |
| BstAUI | TGTACA | 2 cut(s) | 318, 1174 |
| BstBAI | YACGTR | 1 cut(s) | 73 |
| BstBI | TTCGAA | 1 cut(s) | 2060 |
| BstC8I | GCNNGC | 6 cut(s) | 620, 915, 2022, 2405, 2409, 2554 |
| BstDEI | CTNAG | 6 cut(s) | 588, 1242, 1311, 1424, 1745, 2796 |
| BstDSI | CCRYGG | 2 cut(s) | 225, 1683 |
| BstH2I | RGCGCY | 2 cut(s) | 1242, 1261 |
| BstHHI | GCGC | 2 cut(s) | 1241, 1260 |
| BstMAI | GTCTC | 3 cut(s) | 458, 1348, 2419 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1236, 1385, 1798, 2026, 2417, 2590 |
| BstNI | CCWGG | 3 cut(s) | 909, 1890, 2808 |
| BstNSI | RCATGY | 8 cut(s) | 325, 622, 1234, 2058, 2373, 2411, 2488, 2718 |
| BstSCI | CCNGG | 4 cut(s) | 907, 1888, 2584, 2806 |
| BstSLI | GKGCMC | 1 cut(s) | 1123 |
| BstV1I | GCAGC | 5 cut(s) | 546, 1171, 1388, 1962, 2737 |
| BstV2I | GAAGAC | 5 cut(s) | 300, 687, 1301, 1314, 2454 |
| BstX2I | RGATCY | 4 cut(s) | 54, 362, 1507, 1574 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1354 |
| BstYI | RGATCY | 4 cut(s) | 54, 362, 1507, 1574 |
| Bsu36I | CCTNAGG | 1 cut(s) | 588 |
| BsuI | GTATCC | 2 cut(s) | 336, 2172 |
| BsuRI | GGCC | 6 cut(s) | 913, 1623, 2020, 2552, 2593, 2700 |
| BtgI | CCRYGG | 2 cut(s) | 225, 1683 |
| BtsIMutI | CAGTG | 3 cut(s) | 1284, 1789, 2782 |
| BveI | ACCTGC | 3 cut(s) | 700, 1757, 2372 |
| Cac8I | GCNNGC | 6 cut(s) | 620, 915, 2022, 2405, 2409, 2554 |
| CfoI | GCGC | 2 cut(s) | 1241, 1260 |
| Cfr13I | GGNCC | 4 cut(s) | 800, 911, 1456, 1741 |
| CseI | GACGC | 1 cut(s) | 2126 |
| Csp6I | GTAC | 6 cut(s) | 239, 319, 486, 1175, 1246, 2603 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2322, 2357 |
| CviQI | GTAC | 6 cut(s) | 239, 319, 486, 1175, 1246, 2603 |
| DdeI | CTNAG | 6 cut(s) | 588, 1242, 1311, 1424, 1745, 2796 |
| DraIII | CACNNNGTG | 1 cut(s) | 2707 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2485 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2485 |
| EaeI | YGGCCR | 2 cut(s) | 1621, 2698 |
| Eam1104I | CTCTTC | 8 cut(s) | 378, 864, 930, 1812, 2168, 2541, 2686, 2756 |
| EarI | CTCTTC | 8 cut(s) | 378, 864, 930, 1812, 2168, 2541, 2686, 2756 |
| EciI | GGCGGA | 1 cut(s) | 866 |
| Ecl136II | GAGCTC | 3 cut(s) | 388, 1141, 1544 |
| Eco130I | CCWWGG | 2 cut(s) | 225, 1683 |
| Eco147I | AGGCCT | 1 cut(s) | 2552 |
| Eco24I | GRGCYC | 3 cut(s) | 390, 1143, 1546 |
| Eco31I | GGTCTC | 1 cut(s) | 1348 |
| Eco47I | GGWCC | 3 cut(s) | 800, 1456, 1741 |
| Eco47III | AGCGCT | 2 cut(s) | 1240, 1259 |
| Eco53kI | GAGCTC | 3 cut(s) | 388, 1141, 1544 |
| Eco81I | CCTNAGG | 1 cut(s) | 588 |
| EcoICRI | GAGCTC | 3 cut(s) | 388, 1141, 1544 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1741 |
| EcoRI | GAATTC | 1 cut(s) | 922 |
| EcoRII | CCWGG | 3 cut(s) | 907, 1888, 2806 |
| EcoT14I | CCWWGG | 2 cut(s) | 225, 1683 |
| EcoT22I | ATGCAT | 4 cut(s) | 1150, 1232, 2010, 2620 |
| EcoT38I | GRGCYC | 3 cut(s) | 390, 1143, 1546 |
| ErhI | CCWWGG | 2 cut(s) | 225, 1683 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1472, 1504 |
| FaqI | GGGAC | 1 cut(s) | 813 |
| FauNDI | CATATG | 2 cut(s) | 1189, 1860 |
| FbaI | TGATCA | 2 cut(s) | 2076, 2472 |
| FblI | GTMKAC | 1 cut(s) | 1074 |
| Fnu4HI | GCNGC | 6 cut(s) | 535, 1160, 1377, 1976, 2271, 2751 |
| FriOI | GRGCYC | 3 cut(s) | 390, 1143, 1546 |
| Fsp4HI | GCNGC | 6 cut(s) | 535, 1160, 1377, 1976, 2271, 2751 |
| FspBI | CTAG | 9 cut(s) | 269, 402, 468, 594, 624, 1152, 1212, 2121, 2246 |
| GlaI | GCGC | 2 cut(s) | 1240, 1259 |
| GluI | GCNGC | 6 cut(s) | 535, 1160, 1377, 1976, 2271, 2751 |
| HaeII | RGCGCY | 2 cut(s) | 1242, 1261 |
| HaeIII | GGCC | 6 cut(s) | 913, 1623, 2020, 2552, 2593, 2700 |
| HapII | CCGG | 3 cut(s) | 1511, 2444, 2586 |
| HgaI | GACGC | 1 cut(s) | 2126 |
| HhaI | GCGC | 2 cut(s) | 1241, 1260 |
| Hin6I | GCGC | 2 cut(s) | 1239, 1258 |
| HinP1I | GCGC | 2 cut(s) | 1239, 1258 |
| HincII | GTYRAC | 3 cut(s) | 1932, 2347, 2904 |
| HindII | GTYRAC | 3 cut(s) | 1932, 2347, 2904 |
| HindIII | AAGCTT | 2 cut(s) | 452, 2648 |
| HinfI | GANTC | 9 cut(s) | 259, 605, 890, 1223, 1272, 1301, 1557, 2658, 2786 |
| HpaI | GTTAAC | 1 cut(s) | 2904 |
| HpaII | CCGG | 3 cut(s) | 1511, 2444, 2586 |
| HphI | GGTGA | 6 cut(s) | 299, 388, 800, 944, 2272, 2312 |
| Hpy166II | GTNNAC | 9 cut(s) | 76, 239, 319, 1075, 1456, 1866, 1932, 2347, 2904 |
| Hpy8I | GTNNAC | 9 cut(s) | 76, 239, 319, 1075, 1456, 1866, 1932, 2347, 2904 |
| HpyCH4III | ACNGT | 9 cut(s) | 582, 1709, 2066, 2105, 2184, 2571, 2602, 2687, 2777 |
| HpyCH4IV | ACGT | 1 cut(s) | 72 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1236, 1385, 1798, 2026, 2417, 2590 |
| HpyF3I | CTNAG | 6 cut(s) | 588, 1242, 1311, 1424, 1745, 2796 |
| HpySE526I | ACGT | 1 cut(s) | 72 |
| HspAI | GCGC | 2 cut(s) | 1239, 1258 |
| Kpn2I | TCCGGA | 1 cut(s) | 2443 |
| Ksp22I | TGATCA | 2 cut(s) | 2076, 2472 |
| KspAI | GTTAAC | 1 cut(s) | 2904 |
| LguI | GCTCTTC | 1 cut(s) | 378 |
| LmnI | GCTCC | 4 cut(s) | 393, 1408, 1541, 1763 |
| Lsp1109I | GCAGC | 5 cut(s) | 546, 1171, 1388, 1962, 2737 |
| LweI | GCATC | 9 cut(s) | 175, 538, 1157, 1639, 1995, 2190, 2605, 2627, 2734 |
| MaeI | CTAG | 9 cut(s) | 269, 402, 468, 594, 624, 1152, 1212, 2121, 2246 |
| MaeII | ACGT | 1 cut(s) | 72 |
| MaeIII | GTNAC | 7 cut(s) | 1484, 2066, 2105, 2300, 2465, 2667, 2717 |
| MfeI | CAATTG | 2 cut(s) | 783, 1204 |
| MflI | RGATCY | 4 cut(s) | 54, 362, 1507, 1574 |
| MhlI | GDGCHC | 5 cut(s) | 390, 1123, 1143, 1546, 2044 |
| MlsI | TGGCCA | 2 cut(s) | 1623, 2700 |
| MluNI | TGGCCA | 2 cut(s) | 1623, 2700 |
| MlyI | GAGTC | 3 cut(s) | 614, 1232, 1310 |
| MmeI | TCCRAC | 5 cut(s) | 750, 1371, 1691, 1751, 2533 |
| Mox20I | TGGCCA | 2 cut(s) | 1623, 2700 |
| Mph1103I | ATGCAT | 4 cut(s) | 1150, 1232, 2010, 2620 |
| MroI | TCCGGA | 1 cut(s) | 2443 |
| MroXI | GAANNNNTTC | 2 cut(s) | 26, 172 |
| MscI | TGGCCA | 2 cut(s) | 1623, 2700 |
| MslI | CAYNNNNRTG | 4 cut(s) | 279, 816, 1996, 2674 |
| Msp20I | TGGCCA | 2 cut(s) | 1623, 2700 |
| MspA1I | CMGCKG | 2 cut(s) | 332, 2273 |
| MspCI | CTTAAG | 1 cut(s) | 2672 |
| MspI | CCGG | 3 cut(s) | 1511, 2444, 2586 |
| MspR9I | CCNGG | 4 cut(s) | 909, 1890, 2586, 2808 |
| MunI | CAATTG | 2 cut(s) | 783, 1204 |
| Mva1269I | GAATGC | 2 cut(s) | 1161, 2752 |
| MvaI | CCWGG | 3 cut(s) | 909, 1890, 2808 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1236, 1385, 1798, 2026, 2417, 2590 |
| NciI | CCSGG | 1 cut(s) | 2586 |
| NcoI | CCATGG | 2 cut(s) | 225, 1683 |
| NdeI | CATATG | 2 cut(s) | 1189, 1860 |
| NlaIV | GGNNCC | 4 cut(s) | 801, 1458, 1509, 2269 |
| NmeAIII | GCCGAG | 2 cut(s) | 2259, 2396 |
| NmuCI | GTSAC | 5 cut(s) | 1484, 2066, 2300, 2667, 2717 |
| NsiI | ATGCAT | 4 cut(s) | 1150, 1232, 2010, 2620 |
| NspI | RCATGY | 8 cut(s) | 325, 622, 1234, 2058, 2373, 2411, 2488, 2718 |
| NspV | TTCGAA | 1 cut(s) | 2060 |
| OliI | CACNNNNGTG | 1 cut(s) | 2674 |
| PaeI | GCATGC | 2 cut(s) | 622, 2411 |
| PceI | AGGCCT | 1 cut(s) | 2552 |
| PciI | ACATGT | 4 cut(s) | 321, 2054, 2484, 2714 |
| PciSI | GCTCTTC | 1 cut(s) | 378 |
| PctI | GAATGC | 2 cut(s) | 1161, 2752 |
| PdmI | GAANNNNTTC | 2 cut(s) | 26, 172 |
| PfeI | GAWTC | 6 cut(s) | 259, 890, 1272, 1557, 2658, 2786 |
| PflFI | GACNNNGTC | 2 cut(s) | 1300, 1318 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 137, 2031 |
| PkrI | GCNGC | 6 cut(s) | 536, 1161, 1378, 1977, 2272, 2752 |
| PleI | GAGTC | 3 cut(s) | 613, 1231, 1309 |
| PpsI | GAGTC | 3 cut(s) | 613, 1231, 1309 |
| Ppu21I | YACGTR | 1 cut(s) | 73 |
| PpuMI | RGGWCCY | 1 cut(s) | 1741 |
| PscI | ACATGT | 4 cut(s) | 321, 2054, 2484, 2714 |
| PshBI | ATTAAT | 1 cut(s) | 2517 |
| PsiI | TTATAA | 1 cut(s) | 500 |
| Psp124BI | GAGCTC | 3 cut(s) | 390, 1143, 1546 |
| Psp5II | RGGWCCY | 1 cut(s) | 1741 |
| Psp6I | CCWGG | 3 cut(s) | 907, 1888, 2806 |
| PspGI | CCWGG | 3 cut(s) | 907, 1888, 2806 |
| PspN4I | GGNNCC | 4 cut(s) | 801, 1458, 1509, 2269 |
| PspPI | GGNCC | 4 cut(s) | 800, 911, 1456, 1741 |
| PspPPI | RGGWCCY | 1 cut(s) | 1741 |
| PsuI | RGATCY | 4 cut(s) | 54, 362, 1507, 1574 |
| PsyI | GACNNNGTC | 2 cut(s) | 1300, 1318 |
| PvuII | CAGCTG | 1 cut(s) | 332 |
| RsaI | GTAC | 6 cut(s) | 240, 320, 487, 1176, 1247, 2604 |
| RsaNI | GTAC | 6 cut(s) | 239, 319, 486, 1175, 1246, 2603 |
| RseI | CAYNNNNRTG | 4 cut(s) | 279, 816, 1996, 2674 |
| SacI | GAGCTC | 3 cut(s) | 390, 1143, 1546 |
| SapI | GCTCTTC | 1 cut(s) | 378 |
| SatI | GCNGC | 6 cut(s) | 535, 1160, 1377, 1976, 2271, 2751 |
| Sau96I | GGNCC | 4 cut(s) | 800, 911, 1456, 1741 |
| ScaI | AGTACT | 2 cut(s) | 487, 1247 |
| SchI | GAGTC | 3 cut(s) | 614, 1232, 1310 |
| ScrFI | CCNGG | 4 cut(s) | 909, 1890, 2586, 2808 |
| SduI | GDGCHC | 5 cut(s) | 390, 1123, 1143, 1546, 2044 |
| SfaNI | GCATC | 9 cut(s) | 175, 538, 1157, 1639, 1995, 2190, 2605, 2627, 2734 |
| SfuI | TTCGAA | 1 cut(s) | 2060 |
| SinI | GGWCC | 3 cut(s) | 800, 1456, 1741 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 279, 816, 1996, 2674 |
| SmlI | CTYRAG | 1 cut(s) | 2672 |
| SmoI | CTYRAG | 1 cut(s) | 2672 |
| SphI | GCATGC | 2 cut(s) | 622, 2411 |
| SseBI | AGGCCT | 1 cut(s) | 2552 |
| SsiI | CCGC | 2 cut(s) | 851, 2271 |
| SspI | AATATT | 1 cut(s) | 2323 |
| SspMI | CTAG | 9 cut(s) | 269, 402, 468, 594, 624, 1152, 1212, 2121, 2246 |
| SstI | GAGCTC | 3 cut(s) | 390, 1143, 1546 |
| StuI | AGGCCT | 1 cut(s) | 2552 |
| StyD4I | CCNGG | 4 cut(s) | 907, 1888, 2584, 2806 |
| StyI | CCWWGG | 2 cut(s) | 225, 1683 |
| TaaI | ACNGT | 9 cut(s) | 582, 1709, 2066, 2105, 2184, 2571, 2602, 2687, 2777 |
| TaiI | ACGT | 1 cut(s) | 75 |
| TaqI | TCGA | 3 cut(s) | 840, 2038, 2060 |
| TaqII | GACCGA | 1 cut(s) | 113 |
| TatI | WGTACW | 4 cut(s) | 318, 485, 1174, 1245 |
| TauI | GCSGC | 1 cut(s) | 2273 |
| TfiI | GAWTC | 6 cut(s) | 259, 890, 1272, 1557, 2658, 2786 |
| TscAI | CASTG | 3 cut(s) | 1291, 1789, 2782 |
| TseFI | GTSAC | 5 cut(s) | 1484, 2066, 2300, 2667, 2717 |
| TseI | GCWGC | 5 cut(s) | 534, 1159, 1376, 1975, 2750 |
| Tsp45I | GTSAC | 5 cut(s) | 1484, 2066, 2300, 2667, 2717 |
| TspGWI | ACGGA | 1 cut(s) | 2620 |
| TspRI | CASTG | 3 cut(s) | 1291, 1789, 2782 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1300, 1318 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 137, 2031 |
| Vha464I | CTTAAG | 1 cut(s) | 2672 |
| VpaK11BI | GGWCC | 3 cut(s) | 800, 1456, 1741 |
| VspI | ATTAAT | 1 cut(s) | 2517 |
| XapI | RAATTY | 5 cut(s) | 202, 854, 922, 2884, 2891 |
| XbaI | TCTAGA | 2 cut(s) | 1151, 1211 |
| XceI | RCATGY | 8 cut(s) | 325, 622, 1234, 2058, 2373, 2411, 2488, 2718 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 1261, 1387, 1690, 2028, 2516 |
| XmiI | GTMKAC | 1 cut(s) | 1074 |
| XmnI | GAANNNNTTC | 2 cut(s) | 26, 172 |
| XspI | CTAG | 9 cut(s) | 269, 402, 468, 594, 624, 1152, 1212, 2121, 2246 |
| ZrmI | AGTACT | 2 cut(s) | 487, 1247 |
| Zsp2I | ATGCAT | 4 cut(s) | 1150, 1232, 2010, 2620 |