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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 96 |
| AccB1I | GGYRCC | 1 cut(s) | 431 |
| AcuI | CTGAAG | 1 cut(s) | 284 |
| AfaI | GTAC | 2 cut(s) | 286, 584 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 85, 336, 481, 786 |
| AflIII | ACRYGT | 1 cut(s) | 630 |
| AgsI | TTSAA | 3 cut(s) | 202, 394, 611 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 634 |
| AjnI | CCWGG | 1 cut(s) | 685 |
| AluBI | AGCT | 2 cut(s) | 368, 410 |
| AluI | AGCT | 2 cut(s) | 368, 410 |
| Alw21I | GWGCWC | 1 cut(s) | 114 |
| AoxI | GGCC | 2 cut(s) | 119, 692 |
| ApeKI | GCWGC | 1 cut(s) | 682 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 119, 151 |
| AseI | ATTAAT | 1 cut(s) | 525 |
| AspS9I | GGNCC | 3 cut(s) | 120, 636, 650 |
| AsuHPI | GGTGA | 3 cut(s) | 373, 593, 656 |
| AvaII | GGWCC | 2 cut(s) | 636, 650 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 574, 607 |
| BanI | GGYRCC | 1 cut(s) | 431 |
| BauI | CACGAG | 1 cut(s) | 113 |
| BbsI | GAAGAC | 3 cut(s) | 80, 584, 704 |
| Bbv12I | GWGCWC | 1 cut(s) | 114 |
| BbvI | GCAGC | 1 cut(s) | 694 |
| BccI | CCATC | 4 cut(s) | 55, 422, 474, 641 |
| BciT130I | CCWGG | 1 cut(s) | 687 |
| BciVI | GTATCC | 1 cut(s) | 668 |
| BfmI | CTRYAG | 1 cut(s) | 595 |
| BfuI | GTATCC | 1 cut(s) | 668 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 691 |
| BisI | GCNGC | 1 cut(s) | 683 |
| BlsI | GCNGC | 1 cut(s) | 684 |
| Bme1390I | CCNGG | 1 cut(s) | 687 |
| Bme18I | GGWCC | 2 cut(s) | 636, 650 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 634 |
| BmgT120I | GGNCC | 3 cut(s) | 120, 636, 650 |
| BmiI | GGNNCC | 2 cut(s) | 122, 433 |
| BmrFI | CCNGG | 1 cut(s) | 687 |
| BmsI | GCATC | 3 cut(s) | 79, 390, 504 |
| BpiI | GAAGAC | 3 cut(s) | 80, 584, 704 |
| BpuEI | CTTGAG | 2 cut(s) | 478, 557 |
| BsaJI | CCNNGG | 3 cut(s) | 313, 639, 780 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 268, 298 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 85, 336, 481, 786 |
| Bse118I | RCCGGY | 1 cut(s) | 491 |
| Bse1I | ACTGG | 1 cut(s) | 614 |
| Bse3DI | GCAATG | 1 cut(s) | 555 |
| BseBI | CCWGG | 1 cut(s) | 687 |
| BseDI | CCNNGG | 3 cut(s) | 313, 639, 780 |
| BseGI | GGATG | 4 cut(s) | 94, 381, 495, 721 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 85, 336, 481, 786 |
| BseMI | GCAATG | 1 cut(s) | 555 |
| BseMII | CTCAG | 1 cut(s) | 402 |
| BseNI | ACTGG | 1 cut(s) | 614 |
| BseRI | GAGGAG | 2 cut(s) | 80, 289 |
| BseXI | GCAGC | 1 cut(s) | 694 |
| BshFI | GGCC | 2 cut(s) | 121, 694 |
| BshNI | GGYRCC | 1 cut(s) | 431 |
| BsiHKAI | GWGCWC | 1 cut(s) | 114 |
| BsiSI | CCGG | 1 cut(s) | 492 |
| BslFI | GGGAC | 2 cut(s) | 308, 497 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 85, 336, 481, 786 |
| BsmFI | GGGAC | 2 cut(s) | 308, 497 |
| BsnI | GGCC | 2 cut(s) | 121, 694 |
| Bsp1286I | GDGCHC | 1 cut(s) | 114 |
| Bsp143I | GATC | 2 cut(s) | 7, 210 |
| Bsp19I | CCATGG | 1 cut(s) | 313 |
| BspANI | GGCC | 2 cut(s) | 121, 694 |
| BspCNI | CTCAG | 1 cut(s) | 403 |
| BspLI | GGNNCC | 2 cut(s) | 122, 433 |
| BspT107I | GGYRCC | 1 cut(s) | 431 |
| BsrDI | GCAATG | 1 cut(s) | 555 |
| BsrFI | RCCGGY | 1 cut(s) | 491 |
| BsrI | ACTGG | 1 cut(s) | 614 |
| BssAI | RCCGGY | 1 cut(s) | 491 |
| BssECI | CCNNGG | 3 cut(s) | 313, 639, 780 |
| BssMI | GATC | 2 cut(s) | 7, 210 |
| BssSI | CACGAG | 1 cut(s) | 113 |
| BssT1I | CCWWGG | 3 cut(s) | 313, 639, 780 |
| Bst2BI | CACGAG | 1 cut(s) | 113 |
| Bst2UI | CCWGG | 1 cut(s) | 687 |
| Bst4CI | ACNGT | 1 cut(s) | 599 |
| Bst6I | CTCTTC | 1 cut(s) | 246 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 501 |
| BstC8I | GCNNGC | 1 cut(s) | 230 |
| BstDEI | CTNAG | 1 cut(s) | 411 |
| BstDSI | CCRYGG | 1 cut(s) | 313 |
| BstF5I | GGATG | 4 cut(s) | 94, 381, 495, 721 |
| BstKTI | GATC | 2 cut(s) | 10, 213 |
| BstMBI | GATC | 2 cut(s) | 7, 210 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 118, 501, 518, 691 |
| BstNI | CCWGG | 1 cut(s) | 687 |
| BstNSI | RCATGY | 3 cut(s) | 175, 512, 634 |
| BstSCI | CCNGG | 1 cut(s) | 685 |
| BstSFI | CTRYAG | 1 cut(s) | 595 |
| BstV1I | GCAGC | 1 cut(s) | 694 |
| BstV2I | GAAGAC | 3 cut(s) | 80, 584, 704 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 132 |
| BsuI | GTATCC | 1 cut(s) | 668 |
| BsuRI | GGCC | 2 cut(s) | 121, 694 |
| BtgI | CCRYGG | 1 cut(s) | 313 |
| BtsCI | GGATG | 4 cut(s) | 94, 381, 495, 721 |
| Cac8I | GCNNGC | 1 cut(s) | 230 |
| Cfr10I | RCCGGY | 1 cut(s) | 491 |
| Cfr13I | GGNCC | 3 cut(s) | 120, 636, 650 |
| CseI | GACGC | 1 cut(s) | 227 |
| Csp6I | GTAC | 2 cut(s) | 285, 583 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 382, 417 |
| CviAII | CATG | 7 cut(s) | 172, 314, 509, 532, 586, 625, 631 |
| CviQI | GTAC | 2 cut(s) | 285, 583 |
| DdeI | CTNAG | 1 cut(s) | 411 |
| DpnI | GATC | 2 cut(s) | 9, 212 |
| DpnII | GATC | 2 cut(s) | 7, 210 |
| DriI | GACNNNNNGTC | 1 cut(s) | 634 |
| Eam1104I | CTCTTC | 1 cut(s) | 246 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 634 |
| EarI | CTCTTC | 1 cut(s) | 246 |
| Eco130I | CCWWGG | 3 cut(s) | 313, 639, 780 |
| Eco47I | GGWCC | 2 cut(s) | 636, 650 |
| Eco57I | CTGAAG | 1 cut(s) | 284 |
| EcoO109I | RGGNCCY | 1 cut(s) | 120 |
| EcoRII | CCWGG | 1 cut(s) | 685 |
| EcoT14I | CCWWGG | 3 cut(s) | 313, 639, 780 |
| EcoT22I | ATGCAT | 1 cut(s) | 208 |
| ErhI | CCWWGG | 3 cut(s) | 313, 639, 780 |
| FaeI | CATG | 7 cut(s) | 175, 317, 512, 535, 589, 628, 634 |
| FaqI | GGGAC | 2 cut(s) | 308, 497 |
| FatI | CATG | 7 cut(s) | 171, 313, 508, 531, 585, 624, 630 |
| Fnu4HI | GCNGC | 1 cut(s) | 683 |
| FokI | GGATG | 4 cut(s) | 101, 368, 482, 728 |
| Fsp4HI | GCNGC | 1 cut(s) | 683 |
| GluI | GCNGC | 1 cut(s) | 683 |
| HaeIII | GGCC | 2 cut(s) | 121, 694 |
| HapII | CCGG | 1 cut(s) | 492 |
| HgaI | GACGC | 1 cut(s) | 227 |
| Hin1II | CATG | 7 cut(s) | 175, 317, 512, 535, 589, 628, 634 |
| HinfI | GANTC | 1 cut(s) | 280 |
| HpaII | CCGG | 1 cut(s) | 492 |
| HphI | GGTGA | 3 cut(s) | 373, 593, 656 |
| Hpy166II | GTNNAC | 2 cut(s) | 217, 448 |
| Hpy188I | TCNGA | 4 cut(s) | 12, 54, 109, 724 |
| Hpy188III | TCNNGA | 1 cut(s) | 574 |
| Hpy8I | GTNNAC | 2 cut(s) | 217, 448 |
| HpyAV | CCTTC | 2 cut(s) | 49, 285 |
| HpyCH4III | ACNGT | 1 cut(s) | 599 |
| HpyCH4IV | ACGT | 1 cut(s) | 581 |
| HpyCH4V | TGCA | 7 cut(s) | 26, 206, 381, 468, 504, 521, 758 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 118, 501, 518, 691 |
| HpyF3I | CTNAG | 1 cut(s) | 411 |
| HpySE526I | ACGT | 1 cut(s) | 581 |
| Hsp92II | CATG | 7 cut(s) | 175, 317, 512, 535, 589, 628, 634 |
| Kzo9I | GATC | 2 cut(s) | 7, 210 |
| LmnI | GCTCC | 2 cut(s) | 225, 565 |
| LpnPI | CCDG | 6 cut(s) | 141, 165, 505, 627, 672, 699 |
| Lsp1109I | GCAGC | 1 cut(s) | 694 |
| LweI | GCATC | 3 cut(s) | 79, 390, 504 |
| MaeII | ACGT | 1 cut(s) | 581 |
| MaeIII | GTNAC | 3 cut(s) | 167, 238, 599 |
| MalI | GATC | 2 cut(s) | 9, 212 |
| MboI | GATC | 2 cut(s) | 7, 210 |
| MboII | GAAGA | 6 cut(s) | 85, 263, 277, 364, 589, 709 |
| MhlI | GDGCHC | 1 cut(s) | 114 |
| MluCI | AATT | 1 cut(s) | 522 |
| MmeI | TCCRAC | 1 cut(s) | 228 |
| Mph1103I | ATGCAT | 1 cut(s) | 208 |
| MseI | TTAA | 5 cut(s) | 488, 525, 618, 711, 728 |
| MslI | CAYNNNNRTG | 2 cut(s) | 318, 629 |
| MspI | CCGG | 1 cut(s) | 492 |
| MspR9I | CCNGG | 1 cut(s) | 687 |
| MvaI | CCWGG | 1 cut(s) | 687 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 118, 501, 518, 691 |
| NcoI | CCATGG | 1 cut(s) | 313 |
| NdeII | GATC | 2 cut(s) | 7, 210 |
| NlaIII | CATG | 7 cut(s) | 175, 317, 512, 535, 589, 628, 634 |
| NlaIV | GGNNCC | 2 cut(s) | 122, 433 |
| NmuCI | GTSAC | 3 cut(s) | 167, 238, 599 |
| NsiI | ATGCAT | 1 cut(s) | 208 |
| NspI | RCATGY | 3 cut(s) | 175, 512, 634 |
| PciI | ACATGT | 1 cut(s) | 630 |
| PfeI | GAWTC | 1 cut(s) | 280 |
| PkrI | GCNGC | 1 cut(s) | 684 |
| PscI | ACATGT | 1 cut(s) | 630 |
| PshBI | ATTAAT | 1 cut(s) | 525 |
| PsiI | TTATAA | 1 cut(s) | 96 |
| Psp6I | CCWGG | 1 cut(s) | 685 |
| PspGI | CCWGG | 1 cut(s) | 685 |
| PspN4I | GGNNCC | 2 cut(s) | 122, 433 |
| PspPI | GGNCC | 3 cut(s) | 120, 636, 650 |
| RsaI | GTAC | 2 cut(s) | 286, 584 |
| RsaNI | GTAC | 2 cut(s) | 285, 583 |
| RseI | CAYNNNNRTG | 2 cut(s) | 318, 629 |
| SaqAI | TTAA | 5 cut(s) | 488, 525, 618, 711, 728 |
| SatI | GCNGC | 1 cut(s) | 683 |
| Sau3AI | GATC | 2 cut(s) | 7, 210 |
| Sau96I | GGNCC | 3 cut(s) | 120, 636, 650 |
| ScrFI | CCNGG | 1 cut(s) | 687 |
| SduI | GDGCHC | 1 cut(s) | 114 |
| SetI | ASST | 7 cut(s) | 363, 370, 412, 584, 606, 667, 751 |
| SfaNI | GCATC | 3 cut(s) | 79, 390, 504 |
| SfcI | CTRYAG | 1 cut(s) | 595 |
| SinI | GGWCC | 2 cut(s) | 636, 650 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 318, 629 |
| SmlI | CTYRAG | 2 cut(s) | 457, 572 |
| SmoI | CTYRAG | 2 cut(s) | 457, 572 |
| Sse9I | AATT | 1 cut(s) | 522 |
| SspI | AATATT | 1 cut(s) | 424 |
| StyD4I | CCNGG | 1 cut(s) | 685 |
| StyI | CCWWGG | 3 cut(s) | 313, 639, 780 |
| TaaI | ACNGT | 1 cut(s) | 599 |
| TaiI | ACGT | 1 cut(s) | 584 |
| TaqI | TCGA | 1 cut(s) | 289 |
| TasI | AATT | 1 cut(s) | 522 |
| TfiI | GAWTC | 1 cut(s) | 280 |
| Tru1I | TTAA | 5 cut(s) | 488, 525, 618, 711, 728 |
| Tru9I | TTAA | 5 cut(s) | 488, 525, 618, 711, 728 |
| TseFI | GTSAC | 3 cut(s) | 167, 238, 599 |
| TseI | GCWGC | 1 cut(s) | 682 |
| Tsp45I | GTSAC | 3 cut(s) | 167, 238, 599 |
| TspDTI | ATGAA | 2 cut(s) | 17, 86 |
| TspGWI | ACGGA | 1 cut(s) | 386 |
| VpaK11BI | GGWCC | 2 cut(s) | 636, 650 |
| VspI | ATTAAT | 1 cut(s) | 525 |
| XceI | RCATGY | 3 cut(s) | 175, 512, 634 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 442 |
| Zsp2I | ATGCAT | 1 cut(s) | 208 |