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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2189 |
| Acc36I | ACCTGC | 1 cut(s) | 2189 |
| AccB1I | GGYRCC | 3 cut(s) | 670, 2206, 2237 |
| AccI | GTMKAC | 1 cut(s) | 2171 |
| AciI | CCGC | 1 cut(s) | 317 |
| AclWI | GGATC | 3 cut(s) | 401, 1312, 1439 |
| AcoI | YGGCCR | 1 cut(s) | 1702 |
| AcsI | RAATTY | 4 cut(s) | 162, 1717, 2033, 2417 |
| AcuI | CTGAAG | 6 cut(s) | 341, 402, 774, 872, 882, 1044 |
| AfaI | GTAC | 6 cut(s) | 128, 646, 1158, 1728, 1968, 2120 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 509, 566, 839, 970, 2007, 2319 |
| AflII | CTTAAG | 1 cut(s) | 1730 |
| AflIII | ACRYGT | 1 cut(s) | 817 |
| AjnI | CCWGG | 2 cut(s) | 2000, 2164 |
| AleI | CACNNNNGTG | 1 cut(s) | 87 |
| Alw21I | GWGCWC | 1 cut(s) | 1918 |
| Alw26I | GTCTC | 3 cut(s) | 34, 391, 1321 |
| AlwI | GGATC | 3 cut(s) | 401, 1312, 1439 |
| ApoI | RAATTY | 4 cut(s) | 162, 1717, 2033, 2417 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1104, 1125 |
| AspA2I | CCTAGG | 1 cut(s) | 241 |
| AspLEI | GCGC | 1 cut(s) | 2392 |
| AspS9I | GGNCC | 5 cut(s) | 35, 866, 961, 1868, 1998 |
| AsuHPI | GGTGA | 5 cut(s) | 316, 557, 995, 1771, 2213 |
| AsuNHI | GCTAGC | 1 cut(s) | 1847 |
| AvaII | GGWCC | 4 cut(s) | 35, 961, 1868, 1998 |
| AvrII | CCTAGG | 1 cut(s) | 241 |
| BaeGI | GKGCMC | 1 cut(s) | 675 |
| BalI | TGGCCA | 1 cut(s) | 1704 |
| BanI | GGYRCC | 3 cut(s) | 670, 2206, 2237 |
| BbsI | GAAGAC | 4 cut(s) | 329, 334, 1980, 2294 |
| Bbv12I | GWGCWC | 1 cut(s) | 1918 |
| BbvCI | CCTCAGC | 1 cut(s) | 2153 |
| BceAI | ACGGC | 1 cut(s) | 817 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 665, 699, 1237, 1271 |
| BciT130I | CCWGG | 2 cut(s) | 2002, 2166 |
| BcoDI | GTCTC | 3 cut(s) | 34, 391, 1321 |
| BfmI | CTRYAG | 4 cut(s) | 951, 1035, 2172, 2376 |
| BfrI | CTTAAG | 1 cut(s) | 1730 |
| BfuAI | ACCTGC | 1 cut(s) | 2189 |
| BglII | AGATCT | 1 cut(s) | 883 |
| BlnI | CCTAGG | 1 cut(s) | 241 |
| Bme1390I | CCNGG | 2 cut(s) | 2002, 2166 |
| Bme18I | GGWCC | 4 cut(s) | 35, 961, 1868, 1998 |
| BmgT120I | GGNCC | 5 cut(s) | 35, 866, 961, 1868, 1998 |
| BmiI | GGNNCC | 4 cut(s) | 672, 803, 2208, 2239 |
| BmrFI | CCNGG | 2 cut(s) | 2002, 2166 |
| BmtI | GCTAGC | 1 cut(s) | 1851 |
| BpiI | GAAGAC | 4 cut(s) | 329, 334, 1980, 2294 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1902, 2153 |
| BpuEI | CTTGAG | 3 cut(s) | 900, 1387, 1592 |
| BsaAI | YACGTR | 1 cut(s) | 1160 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1309 |
| BsaI | GGTCTC | 1 cut(s) | 391 |
| BsaJI | CCNNGG | 8 cut(s) | 72, 85, 241, 833, 1091, 2164, 2165, 2292 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1177, 1207, 1331, 1361 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 509, 566, 839, 970, 2007, 2319 |
| Bse1I | ACTGG | 5 cut(s) | 355, 1070, 1103, 1124, 1471 |
| Bse3DI | GCAATG | 2 cut(s) | 1854, 2239 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1309 |
| BseBI | CCWGG | 2 cut(s) | 2002, 2166 |
| BseDI | CCNNGG | 8 cut(s) | 72, 85, 241, 833, 1091, 2164, 2165, 2292 |
| BseJI | GATNNNNATC | 1 cut(s) | 1309 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 509, 566, 839, 970, 2007, 2319 |
| BseMI | GCAATG | 2 cut(s) | 1854, 2239 |
| BseMII | CTCAG | 7 cut(s) | 609, 930, 1449, 1487, 1713, 1893, 2144 |
| BseNI | ACTGG | 5 cut(s) | 355, 1070, 1103, 1124, 1471 |
| BseRI | GAGGAG | 5 cut(s) | 379, 638, 759, 2006, 2170 |
| BseSI | GKGCMC | 1 cut(s) | 675 |
| BshNI | GGYRCC | 3 cut(s) | 670, 2206, 2237 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1918 |
| BslFI | GGGAC | 1 cut(s) | 1573 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 509, 566, 839, 970, 2007, 2319 |
| BsmAI | GTCTC | 3 cut(s) | 34, 391, 1321 |
| BsmBI | CGTCTC | 1 cut(s) | 34 |
| BsmFI | GGGAC | 1 cut(s) | 1573 |
| BsmI | GAATGC | 1 cut(s) | 1544 |
| Bso31I | GGTCTC | 1 cut(s) | 391 |
| Bsp1286I | GDGCHC | 2 cut(s) | 675, 1918 |
| Bsp143I | GATC | 5 cut(s) | 406, 883, 1304, 1444, 2181 |
| Bsp19I | CCATGG | 3 cut(s) | 72, 85, 2292 |
| BspACI | CCGC | 1 cut(s) | 317 |
| BspCNI | CTCAG | 7 cut(s) | 608, 931, 1448, 1488, 1714, 1894, 2145 |
| BspLI | GGNNCC | 4 cut(s) | 672, 803, 2208, 2239 |
| BspMAI | CTGCAG | 2 cut(s) | 1039, 2380 |
| BspMI | ACCTGC | 1 cut(s) | 2189 |
| BspOI | GCTAGC | 1 cut(s) | 1851 |
| BspPI | GGATC | 3 cut(s) | 401, 1312, 1439 |
| BspT107I | GGYRCC | 3 cut(s) | 670, 2206, 2237 |
| BspTI | CTTAAG | 1 cut(s) | 1730 |
| BspTNI | GGTCTC | 1 cut(s) | 391 |
| BsrDI | GCAATG | 2 cut(s) | 1854, 2239 |
| BsrI | ACTGG | 5 cut(s) | 355, 1070, 1103, 1124, 1471 |
| BssECI | CCNNGG | 8 cut(s) | 72, 85, 241, 833, 1091, 2164, 2165, 2292 |
| BssMI | GATC | 5 cut(s) | 406, 883, 1304, 1444, 2181 |
| BssT1I | CCWWGG | 5 cut(s) | 72, 85, 241, 1091, 2292 |
| Bst2UI | CCWGG | 2 cut(s) | 2002, 2166 |
| Bst4CI | ACNGT | 4 cut(s) | 734, 1397, 2118, 2176 |
| Bst6I | CTCTTC | 5 cut(s) | 378, 821, 1144, 1383, 1503 |
| BstAFI | CTTAAG | 1 cut(s) | 1730 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1034 |
| BstBAI | YACGTR | 1 cut(s) | 1160 |
| BstC8I | GCNNGC | 5 cut(s) | 557, 633, 1035, 1849, 2054 |
| BstDEI | CTNAG | 9 cut(s) | 595, 659, 806, 939, 1435, 1496, 1722, 1902, 2153 |
| BstDSI | CCRYGG | 4 cut(s) | 72, 85, 833, 2292 |
| BstEII | GGTNACC | 1 cut(s) | 1759 |
| BstHHI | GCGC | 1 cut(s) | 2392 |
| BstKTI | GATC | 5 cut(s) | 409, 886, 1307, 1447, 2184 |
| BstMAI | GTCTC | 3 cut(s) | 34, 391, 1321 |
| BstMBI | GATC | 5 cut(s) | 406, 883, 1304, 1444, 2181 |
| BstNI | CCWGG | 2 cut(s) | 2002, 2166 |
| BstNSI | RCATGY | 2 cut(s) | 821, 2056 |
| BstPI | GGTNACC | 1 cut(s) | 1759 |
| BstSCI | CCNGG | 2 cut(s) | 2000, 2164 |
| BstSFI | CTRYAG | 4 cut(s) | 951, 1035, 2172, 2376 |
| BstSLI | GKGCMC | 1 cut(s) | 675 |
| BstV2I | GAAGAC | 4 cut(s) | 329, 334, 1980, 2294 |
| BstX2I | RGATCY | 2 cut(s) | 883, 1304 |
| BstYI | RGATCY | 2 cut(s) | 883, 1304 |
| BtgI | CCRYGG | 4 cut(s) | 72, 85, 833, 2292 |
| BtgZI | GCGATG | 1 cut(s) | 269 |
| BtsI | GCAGTG | 1 cut(s) | 1549 |
| BtsIMutI | CAGTG | 3 cut(s) | 739, 1402, 1549 |
| BveI | ACCTGC | 1 cut(s) | 2189 |
| Cac8I | GCNNGC | 5 cut(s) | 557, 633, 1035, 1849, 2054 |
| CfoI | GCGC | 1 cut(s) | 2392 |
| Cfr13I | GGNCC | 5 cut(s) | 35, 866, 961, 1868, 1998 |
| CseI | GACGC | 1 cut(s) | 51 |
| Csp6I | GTAC | 6 cut(s) | 127, 645, 1157, 1727, 1967, 2119 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 136, 171, 1225, 1260, 1677, 1712 |
| CviAII | CATG | 9 cut(s) | 73, 86, 198, 709, 818, 1706, 2053, 2293, 2345 |
| CviQI | GTAC | 6 cut(s) | 127, 645, 1157, 1727, 1967, 2119 |
| DdeI | CTNAG | 9 cut(s) | 595, 659, 806, 939, 1435, 1496, 1722, 1902, 2153 |
| DpnI | GATC | 5 cut(s) | 408, 885, 1306, 1446, 2183 |
| DpnII | GATC | 5 cut(s) | 406, 883, 1304, 1444, 2181 |
| EaeI | YGGCCR | 1 cut(s) | 1702 |
| Eam1104I | CTCTTC | 5 cut(s) | 378, 821, 1144, 1383, 1503 |
| EarI | CTCTTC | 5 cut(s) | 378, 821, 1144, 1383, 1503 |
| Eco130I | CCWWGG | 5 cut(s) | 72, 85, 241, 1091, 2292 |
| Eco147I | AGGCCT | 3 cut(s) | 1033, 1063, 1096 |
| Eco31I | GGTCTC | 1 cut(s) | 391 |
| Eco47I | GGWCC | 4 cut(s) | 35, 961, 1868, 1998 |
| Eco57I | CTGAAG | 6 cut(s) | 341, 402, 774, 872, 882, 1044 |
| Eco91I | GGTNACC | 1 cut(s) | 1759 |
| EcoO65I | GGTNACC | 1 cut(s) | 1759 |
| EcoRII | CCWGG | 2 cut(s) | 2000, 2164 |
| EcoT14I | CCWWGG | 5 cut(s) | 72, 85, 241, 1091, 2292 |
| ErhI | CCWWGG | 5 cut(s) | 72, 85, 241, 1091, 2292 |
| Esp3I | CGTCTC | 1 cut(s) | 34 |
| FaeI | CATG | 9 cut(s) | 76, 89, 201, 712, 821, 1709, 2056, 2296, 2348 |
| FaqI | GGGAC | 1 cut(s) | 1573 |
| FatI | CATG | 9 cut(s) | 72, 85, 197, 708, 817, 1705, 2052, 2292, 2344 |
| FblI | GTMKAC | 1 cut(s) | 2171 |
| GlaI | GCGC | 1 cut(s) | 2391 |
| HgaI | GACGC | 1 cut(s) | 51 |
| HhaI | GCGC | 1 cut(s) | 2392 |
| Hin1II | CATG | 9 cut(s) | 76, 89, 201, 712, 821, 1709, 2056, 2296, 2348 |
| Hin6I | GCGC | 1 cut(s) | 2390 |
| HinP1I | GCGC | 1 cut(s) | 2390 |
| HinfI | GANTC | 7 cut(s) | 29, 593, 896, 1400, 1433, 1454, 1930 |
| HphI | GGTGA | 5 cut(s) | 316, 557, 995, 1771, 2213 |
| Hpy166II | GTNNAC | 3 cut(s) | 1619, 2172, 2333 |
| Hpy8I | GTNNAC | 3 cut(s) | 1619, 2172, 2333 |
| HpyCH4III | ACNGT | 4 cut(s) | 734, 1397, 2118, 2176 |
| HpyCH4IV | ACGT | 1 cut(s) | 1159 |
| HpyF3I | CTNAG | 9 cut(s) | 595, 659, 806, 939, 1435, 1496, 1722, 1902, 2153 |
| HpySE526I | ACGT | 1 cut(s) | 1159 |
| Hsp92II | CATG | 9 cut(s) | 76, 89, 201, 712, 821, 1709, 2056, 2296, 2348 |
| HspAI | GCGC | 1 cut(s) | 2390 |
| Kzo9I | GATC | 5 cut(s) | 406, 883, 1304, 1444, 2181 |
| LmnI | GCTCC | 3 cut(s) | 625, 801, 1173 |
| MaeII | ACGT | 1 cut(s) | 1159 |
| MaeIII | GTNAC | 7 cut(s) | 662, 704, 728, 1397, 1759, 2135, 2159 |
| MalI | GATC | 5 cut(s) | 408, 885, 1306, 1446, 2183 |
| MboI | GATC | 5 cut(s) | 406, 883, 1304, 1444, 2181 |
| MfeI | CAATTG | 1 cut(s) | 987 |
| MflI | RGATCY | 2 cut(s) | 883, 1304 |
| MhlI | GDGCHC | 2 cut(s) | 675, 1918 |
| MlsI | TGGCCA | 1 cut(s) | 1704 |
| MluCI | AATT | 9 cut(s) | 162, 586, 926, 987, 1644, 1717, 2033, 2061, 2417 |
| MluNI | TGGCCA | 1 cut(s) | 1704 |
| MlyI | GAGTC | 5 cut(s) | 587, 905, 1394, 1427, 1939 |
| MmeI | TCCRAC | 2 cut(s) | 244, 2378 |
| Mox20I | TGGCCA | 1 cut(s) | 1704 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1104, 1125 |
| MscI | TGGCCA | 1 cut(s) | 1704 |
| MseI | TTAA | 5 cut(s) | 534, 651, 1647, 1731, 1812 |
| MslI | CAYNNNNRTG | 2 cut(s) | 87, 1911 |
| Msp20I | TGGCCA | 1 cut(s) | 1704 |
| MspA1I | CMGCKG | 7 cut(s) | 319, 1022, 1085, 1118, 1139, 1229, 1268 |
| MspCI | CTTAAG | 1 cut(s) | 1730 |
| MspR9I | CCNGG | 2 cut(s) | 2002, 2166 |
| MunI | CAATTG | 1 cut(s) | 987 |
| Mva1269I | GAATGC | 1 cut(s) | 1544 |
| MvaI | CCWGG | 2 cut(s) | 2002, 2166 |
| NcoI | CCATGG | 3 cut(s) | 72, 85, 2292 |
| NdeII | GATC | 5 cut(s) | 406, 883, 1304, 1444, 2181 |
| NheI | GCTAGC | 1 cut(s) | 1847 |
| NlaIII | CATG | 9 cut(s) | 76, 89, 201, 712, 821, 1709, 2056, 2296, 2348 |
| NlaIV | GGNNCC | 4 cut(s) | 672, 803, 2208, 2239 |
| NmuCI | GTSAC | 4 cut(s) | 662, 704, 1397, 1759 |
| NspI | RCATGY | 2 cut(s) | 821, 2056 |
| OliI | CACNNNNGTG | 1 cut(s) | 87 |
| PaeI | GCATGC | 1 cut(s) | 2056 |
| PaqCI | CACCTGC | 1 cut(s) | 2189 |
| PasI | CCCWGGG | 1 cut(s) | 2165 |
| PceI | AGGCCT | 3 cut(s) | 1033, 1063, 1096 |
| PciI | ACATGT | 1 cut(s) | 817 |
| PctI | GAATGC | 1 cut(s) | 1544 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1104, 1125 |
| PfeI | GAWTC | 2 cut(s) | 29, 1454 |
| PfoI | TCCNGGA | 1 cut(s) | 2000 |
| PleI | GAGTC | 5 cut(s) | 587, 904, 1394, 1427, 1938 |
| PpsI | GAGTC | 5 cut(s) | 587, 904, 1394, 1427, 1938 |
| Ppu21I | YACGTR | 1 cut(s) | 1160 |
| PscI | ACATGT | 1 cut(s) | 817 |
| Psp6I | CCWGG | 2 cut(s) | 2000, 2164 |
| PspEI | GGTNACC | 1 cut(s) | 1759 |
| PspGI | CCWGG | 2 cut(s) | 2000, 2164 |
| PspN4I | GGNNCC | 4 cut(s) | 672, 803, 2208, 2239 |
| PspPI | GGNCC | 5 cut(s) | 35, 866, 961, 1868, 1998 |
| PstI | CTGCAG | 2 cut(s) | 1039, 2380 |
| PsuI | RGATCY | 2 cut(s) | 883, 1304 |
| PvuII | CAGCTG | 6 cut(s) | 1022, 1085, 1118, 1139, 1229, 1268 |
| RsaI | GTAC | 6 cut(s) | 128, 646, 1158, 1728, 1968, 2120 |
| RsaNI | GTAC | 6 cut(s) | 127, 645, 1157, 1727, 1967, 2119 |
| RseI | CAYNNNNRTG | 2 cut(s) | 87, 1911 |
| SaqAI | TTAA | 5 cut(s) | 534, 651, 1647, 1731, 1812 |
| Sau3AI | GATC | 5 cut(s) | 406, 883, 1304, 1444, 2181 |
| Sau96I | GGNCC | 5 cut(s) | 35, 866, 961, 1868, 1998 |
| SchI | GAGTC | 5 cut(s) | 587, 905, 1394, 1427, 1939 |
| ScrFI | CCNGG | 2 cut(s) | 2002, 2166 |
| SduI | GDGCHC | 2 cut(s) | 675, 1918 |
| SfcI | CTRYAG | 4 cut(s) | 951, 1035, 2172, 2376 |
| SinI | GGWCC | 4 cut(s) | 35, 961, 1868, 1998 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 87, 1911 |
| SmlI | CTYRAG | 4 cut(s) | 915, 1402, 1571, 1730 |
| SmoI | CTYRAG | 4 cut(s) | 915, 1402, 1571, 1730 |
| SphI | GCATGC | 1 cut(s) | 2056 |
| Sse9I | AATT | 9 cut(s) | 162, 586, 926, 987, 1644, 1717, 2033, 2061, 2417 |
| SseBI | AGGCCT | 3 cut(s) | 1033, 1063, 1096 |
| SsiI | CCGC | 1 cut(s) | 317 |
| StuI | AGGCCT | 3 cut(s) | 1033, 1063, 1096 |
| StyD4I | CCNGG | 2 cut(s) | 2000, 2164 |
| StyI | CCWWGG | 5 cut(s) | 72, 85, 241, 1091, 2292 |
| TaaI | ACNGT | 4 cut(s) | 734, 1397, 2118, 2176 |
| TaiI | ACGT | 1 cut(s) | 1162 |
| TaqII | GACCGA | 1 cut(s) | 52 |
| TasI | AATT | 9 cut(s) | 162, 586, 926, 987, 1644, 1717, 2033, 2061, 2417 |
| TatI | WGTACW | 3 cut(s) | 126, 1966, 2118 |
| TfiI | GAWTC | 2 cut(s) | 29, 1454 |
| Tru1I | TTAA | 5 cut(s) | 534, 651, 1647, 1731, 1812 |
| Tru9I | TTAA | 5 cut(s) | 534, 651, 1647, 1731, 1812 |
| TscAI | CASTG | 3 cut(s) | 739, 1402, 1549 |
| TseFI | GTSAC | 4 cut(s) | 662, 704, 1397, 1759 |
| Tsp45I | GTSAC | 4 cut(s) | 662, 704, 1397, 1759 |
| TspDTI | ATGAA | 6 cut(s) | 334, 784, 1620, 2108, 2300, 2361 |
| TspRI | CASTG | 3 cut(s) | 739, 1402, 1549 |
| Vha464I | CTTAAG | 1 cut(s) | 1730 |
| VpaK11BI | GGWCC | 4 cut(s) | 35, 961, 1868, 1998 |
| XapI | RAATTY | 4 cut(s) | 162, 1717, 2033, 2417 |
| XbaI | TCTAGA | 2 cut(s) | 178, 1589 |
| XceI | RCATGY | 2 cut(s) | 821, 2056 |
| XmaJI | CCTAGG | 1 cut(s) | 241 |
| XmiI | GTMKAC | 1 cut(s) | 2171 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1104, 1125 |