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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 193 |
| AccB1I | GGYRCC | 2 cut(s) | 89, 193 |
| AccIII | TCCGGA | 1 cut(s) | 420 |
| AciI | CCGC | 3 cut(s) | 205, 284, 386 |
| AclWI | GGATC | 2 cut(s) | 180, 196 |
| AcuI | CTGAAG | 1 cut(s) | 270 |
| AcvI | CACGTG | 1 cut(s) | 293 |
| AfaI | GTAC | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 16, 427 |
| AgsI | TTSAA | 1 cut(s) | 363 |
| AluBI | AGCT | 5 cut(s) | 230, 335, 359, 392, 401 |
| AluI | AGCT | 5 cut(s) | 230, 335, 359, 392, 401 |
| AlwI | GGATC | 2 cut(s) | 180, 196 |
| Aor13HI | TCCGGA | 1 cut(s) | 420 |
| ApeKI | GCWGC | 4 cut(s) | 236, 287, 335, 338 |
| Asp718I | GGTACC | 1 cut(s) | 193 |
| AspS9I | GGNCC | 1 cut(s) | 7 |
| AvaII | GGWCC | 1 cut(s) | 7 |
| BanI | GGYRCC | 2 cut(s) | 89, 193 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 343, 375 |
| BbrPI | CACGTG | 1 cut(s) | 293 |
| BbsI | GAAGAC | 1 cut(s) | 328 |
| BbvI | GCAGC | 4 cut(s) | 248, 299, 322, 325 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 155, 189 |
| BfaI | CTAG | 2 cut(s) | 39, 122 |
| BglII | AGATCT | 1 cut(s) | 31 |
| BisI | GCNGC | 5 cut(s) | 237, 285, 288, 336, 339 |
| BlsI | GCNGC | 5 cut(s) | 238, 286, 289, 337, 340 |
| Bme18I | GGWCC | 1 cut(s) | 7 |
| BmgT120I | GGNCC | 1 cut(s) | 7 |
| BmiI | GGNNCC | 2 cut(s) | 91, 195 |
| BmsI | GCATC | 1 cut(s) | 244 |
| BpiI | GAAGAC | 1 cut(s) | 328 |
| Bpu10I | CCTNAGC | 1 cut(s) | 231 |
| BpuEI | CTTGAG | 1 cut(s) | 381 |
| BsaAI | YACGTR | 1 cut(s) | 293 |
| BsaWI | WCCGGW | 1 cut(s) | 420 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 16, 427 |
| Bse118I | RCCGGY | 1 cut(s) | 47 |
| BseAI | TCCGGA | 1 cut(s) | 420 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 16, 427 |
| BseXI | GCAGC | 4 cut(s) | 248, 299, 322, 325 |
| BsgI | GTGCAG | 1 cut(s) | 294 |
| BshNI | GGYRCC | 2 cut(s) | 89, 193 |
| BsiSI | CCGG | 2 cut(s) | 48, 421 |
| BslFI | GGGAC | 1 cut(s) | 443 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 16, 427 |
| BsmFI | GGGAC | 1 cut(s) | 443 |
| BsmI | GAATGC | 1 cut(s) | 250 |
| Bsp13I | TCCGGA | 1 cut(s) | 420 |
| Bsp143I | GATC | 3 cut(s) | 31, 172, 201 |
| BspACI | CCGC | 3 cut(s) | 205, 284, 386 |
| BspEI | TCCGGA | 1 cut(s) | 420 |
| BspLI | GGNNCC | 2 cut(s) | 91, 195 |
| BspPI | GGATC | 2 cut(s) | 180, 196 |
| BspT107I | GGYRCC | 2 cut(s) | 89, 193 |
| BsrFI | RCCGGY | 1 cut(s) | 47 |
| BssAI | RCCGGY | 1 cut(s) | 47 |
| BssMI | GATC | 3 cut(s) | 31, 172, 201 |
| Bst4CI | ACNGT | 1 cut(s) | 347 |
| Bst6I | CTCTTC | 1 cut(s) | 124 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 245, 293 |
| BstBAI | YACGTR | 1 cut(s) | 293 |
| BstC8I | GCNNGC | 2 cut(s) | 309, 390 |
| BstDEI | CTNAG | 2 cut(s) | 182, 231 |
| BstKTI | GATC | 3 cut(s) | 34, 175, 204 |
| BstMBI | GATC | 3 cut(s) | 31, 172, 201 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 184, 236, 245, 254, 281, 293, 389, 398 |
| BstV1I | GCAGC | 4 cut(s) | 248, 299, 322, 325 |
| BstV2I | GAAGAC | 1 cut(s) | 328 |
| BstX2I | RGATCY | 2 cut(s) | 31, 201 |
| BstYI | RGATCY | 2 cut(s) | 31, 201 |
| BtsIMutI | CAGTG | 1 cut(s) | 352 |
| Cac8I | GCNNGC | 2 cut(s) | 309, 390 |
| Cfr10I | RCCGGY | 1 cut(s) | 47 |
| Cfr13I | GGNCC | 1 cut(s) | 7 |
| Csp6I | GTAC | 1 cut(s) | 194 |
| CviJI | RGCY | 9 cut(s) | 47, 178, 230, 307, 335, 359, 371, 392, 401 |
| CviKI_1 | RGCY | 9 cut(s) | 47, 178, 230, 307, 335, 359, 371, 392, 401 |
| CviQI | GTAC | 1 cut(s) | 194 |
| DdeI | CTNAG | 2 cut(s) | 182, 231 |
| DpnI | GATC | 3 cut(s) | 33, 174, 203 |
| DpnII | GATC | 3 cut(s) | 31, 172, 201 |
| Eam1104I | CTCTTC | 1 cut(s) | 124 |
| EarI | CTCTTC | 1 cut(s) | 124 |
| EciI | GGCGGA | 1 cut(s) | 194 |
| Eco47I | GGWCC | 1 cut(s) | 7 |
| Eco57I | CTGAAG | 1 cut(s) | 270 |
| Eco72I | CACGTG | 1 cut(s) | 293 |
| FaiI | YATR | 1 cut(s) | 86 |
| FaqI | GGGAC | 1 cut(s) | 443 |
| Fnu4HI | GCNGC | 5 cut(s) | 237, 285, 288, 336, 339 |
| Fsp4HI | GCNGC | 5 cut(s) | 237, 285, 288, 336, 339 |
| FspBI | CTAG | 2 cut(s) | 39, 122 |
| GluI | GCNGC | 5 cut(s) | 237, 285, 288, 336, 339 |
| HapII | CCGG | 2 cut(s) | 48, 421 |
| HincII | GTYRAC | 1 cut(s) | 117 |
| HindII | GTYRAC | 1 cut(s) | 117 |
| HindIII | AAGCTT | 2 cut(s) | 390, 399 |
| HinfI | GANTC | 1 cut(s) | 424 |
| HpaI | GTTAAC | 1 cut(s) | 117 |
| HpaII | CCGG | 2 cut(s) | 48, 421 |
| Hpy166II | GTNNAC | 1 cut(s) | 117 |
| Hpy188III | TCNNGA | 4 cut(s) | 75, 408, 421, 428 |
| Hpy8I | GTNNAC | 1 cut(s) | 117 |
| HpyAV | CCTTC | 2 cut(s) | 14, 103 |
| HpyCH4III | ACNGT | 1 cut(s) | 347 |
| HpyCH4IV | ACGT | 1 cut(s) | 292 |
| HpyCH4V | TGCA | 8 cut(s) | 27, 257, 275, 296, 311, 341, 383, 437 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 184, 236, 245, 254, 281, 293, 389, 398 |
| HpyF3I | CTNAG | 2 cut(s) | 182, 231 |
| HpySE526I | ACGT | 1 cut(s) | 292 |
| Kpn2I | TCCGGA | 1 cut(s) | 420 |
| KpnI | GGTACC | 1 cut(s) | 197 |
| KspAI | GTTAAC | 1 cut(s) | 117 |
| Kzo9I | GATC | 3 cut(s) | 31, 172, 201 |
| LpnPI | CCDG | 3 cut(s) | 61, 321, 434 |
| Lsp1109I | GCAGC | 4 cut(s) | 248, 299, 322, 325 |
| LweI | GCATC | 1 cut(s) | 244 |
| MaeI | CTAG | 2 cut(s) | 39, 122 |
| MaeII | ACGT | 1 cut(s) | 292 |
| MaeIII | GTNAC | 1 cut(s) | 64 |
| MalI | GATC | 3 cut(s) | 33, 174, 203 |
| MboI | GATC | 3 cut(s) | 31, 172, 201 |
| MboII | GAAGA | 3 cut(s) | 141, 263, 333 |
| MflI | RGATCY | 2 cut(s) | 31, 201 |
| MluCI | AATT | 1 cut(s) | 221 |
| MnlI | CCTC | 1 cut(s) | 311 |
| MroI | TCCGGA | 1 cut(s) | 420 |
| MseI | TTAA | 1 cut(s) | 116 |
| MspI | CCGG | 2 cut(s) | 48, 421 |
| Mva1269I | GAATGC | 1 cut(s) | 250 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 184, 236, 245, 254, 281, 293, 389, 398 |
| NdeII | GATC | 3 cut(s) | 31, 172, 201 |
| NlaIV | GGNNCC | 2 cut(s) | 91, 195 |
| NmuCI | GTSAC | 1 cut(s) | 64 |
| PctI | GAATGC | 1 cut(s) | 250 |
| PfeI | GAWTC | 1 cut(s) | 424 |
| PflFI | GACNNNGTC | 1 cut(s) | 156 |
| PkrI | GCNGC | 5 cut(s) | 238, 286, 289, 337, 340 |
| PmaCI | CACGTG | 1 cut(s) | 293 |
| PmlI | CACGTG | 1 cut(s) | 293 |
| Ppu21I | YACGTR | 1 cut(s) | 293 |
| PspCI | CACGTG | 1 cut(s) | 293 |
| PspN4I | GGNNCC | 2 cut(s) | 91, 195 |
| PspPI | GGNCC | 1 cut(s) | 7 |
| PsuI | RGATCY | 2 cut(s) | 31, 201 |
| PsyI | GACNNNGTC | 1 cut(s) | 156 |
| RsaI | GTAC | 1 cut(s) | 195 |
| RsaNI | GTAC | 1 cut(s) | 194 |
| SaqAI | TTAA | 1 cut(s) | 116 |
| SatI | GCNGC | 5 cut(s) | 237, 285, 288, 336, 339 |
| Sau3AI | GATC | 3 cut(s) | 31, 172, 201 |
| Sau96I | GGNCC | 1 cut(s) | 7 |
| SetI | ASST | 9 cut(s) | 95, 102, 232, 273, 295, 337, 361, 394, 403 |
| SfaNI | GCATC | 1 cut(s) | 244 |
| SinI | GGWCC | 1 cut(s) | 7 |
| SmlI | CTYRAG | 1 cut(s) | 396 |
| SmoI | CTYRAG | 1 cut(s) | 396 |
| Sse9I | AATT | 1 cut(s) | 221 |
| SsiI | CCGC | 3 cut(s) | 205, 284, 386 |
| SspMI | CTAG | 2 cut(s) | 39, 122 |
| TaaI | ACNGT | 1 cut(s) | 347 |
| TaiI | ACGT | 1 cut(s) | 295 |
| TaqI | TCGA | 1 cut(s) | 151 |
| TasI | AATT | 1 cut(s) | 221 |
| TauI | GCSGC | 1 cut(s) | 287 |
| TfiI | GAWTC | 1 cut(s) | 424 |
| Tru1I | TTAA | 1 cut(s) | 116 |
| Tru9I | TTAA | 1 cut(s) | 116 |
| TscAI | CASTG | 1 cut(s) | 352 |
| TseFI | GTSAC | 1 cut(s) | 64 |
| TseI | GCWGC | 4 cut(s) | 236, 287, 335, 338 |
| Tsp45I | GTSAC | 1 cut(s) | 64 |
| TspDTI | ATGAA | 2 cut(s) | 234, 393 |
| TspGWI | ACGGA | 1 cut(s) | 118 |
| TspRI | CASTG | 1 cut(s) | 352 |
| Tth111I | GACNNNGTC | 1 cut(s) | 156 |
| VpaK11BI | GGWCC | 1 cut(s) | 7 |
| XspI | CTAG | 2 cut(s) | 39, 122 |