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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 29, 181 |
| AclWI | GGATC | 3 cut(s) | 72, 85, 1037 |
| AfaI | GTAC | 4 cut(s) | 338, 470, 962, 970 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 191, 214, 500, 603, 1119 |
| AflIII | ACRYGT | 2 cut(s) | 965, 971 |
| AgsI | TTSAA | 6 cut(s) | 173, 362, 481, 556, 611, 660 |
| AjnI | CCWGG | 3 cut(s) | 73, 226, 596 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 887, 919 |
| AluBI | AGCT | 8 cut(s) | 58, 149, 235, 374, 440, 530, 574, 707 |
| AluI | AGCT | 8 cut(s) | 58, 149, 235, 374, 440, 530, 574, 707 |
| AlwI | GGATC | 3 cut(s) | 72, 85, 1037 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1046 |
| AoxI | GGCC | 1 cut(s) | 594 |
| ApeKI | GCWGC | 7 cut(s) | 149, 232, 527, 574, 704, 797, 933 |
| AsuHPI | GGTGA | 2 cut(s) | 127, 215 |
| BamHI | GGATCC | 1 cut(s) | 77 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 461, 493 |
| BbvCI | CCTCAGC | 1 cut(s) | 297 |
| BbvI | GCAGC | 7 cut(s) | 136, 244, 539, 561, 716, 809, 945 |
| BccI | CCATC | 4 cut(s) | 194, 251, 763, 801 |
| BciT130I | CCWGG | 3 cut(s) | 75, 228, 598 |
| BfaI | CTAG | 3 cut(s) | 531, 716, 867 |
| BisI | GCNGC | 7 cut(s) | 150, 233, 528, 575, 705, 798, 934 |
| BlpI | GCTNAGC | 1 cut(s) | 486 |
| BlsI | GCNGC | 7 cut(s) | 151, 234, 529, 576, 706, 799, 935 |
| Bme1390I | CCNGG | 3 cut(s) | 75, 228, 598 |
| BmiI | GGNNCC | 1 cut(s) | 79 |
| BmrFI | CCNGG | 3 cut(s) | 75, 228, 598 |
| BmsI | GCATC | 2 cut(s) | 499, 514 |
| BpmI | CTGGAG | 2 cut(s) | 353, 936 |
| Bpu10I | CCTNAGC | 1 cut(s) | 297 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 486 |
| BpuEI | CTTGAG | 2 cut(s) | 427, 973 |
| BsaJI | CCNNGG | 3 cut(s) | 73, 226, 227 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 887, 917 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 191, 214, 500, 603, 1119 |
| Bse1I | ACTGG | 2 cut(s) | 919, 1124 |
| Bse3DI | GCAATG | 1 cut(s) | 279 |
| BseBI | CCWGG | 3 cut(s) | 75, 228, 598 |
| BseDI | CCNNGG | 3 cut(s) | 73, 226, 227 |
| BseGI | GGATG | 8 cut(s) | 138, 205, 276, 490, 529, 592, 963, 1109 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 191, 214, 500, 603, 1119 |
| BseMI | GCAATG | 1 cut(s) | 279 |
| BseMII | CTCAG | 2 cut(s) | 288, 849 |
| BseNI | ACTGG | 2 cut(s) | 919, 1124 |
| BseRI | GAGGAG | 2 cut(s) | 133, 584 |
| BseXI | GCAGC | 7 cut(s) | 136, 244, 539, 561, 716, 809, 945 |
| BshFI | GGCC | 1 cut(s) | 596 |
| BslFI | GGGAC | 1 cut(s) | 737 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 191, 214, 500, 603, 1119 |
| BsmFI | GGGAC | 1 cut(s) | 737 |
| BsmI | GAATGC | 2 cut(s) | 706, 996 |
| BsnI | GGCC | 1 cut(s) | 596 |
| Bsp1407I | TGTACA | 3 cut(s) | 468, 960, 968 |
| Bsp143I | GATC | 5 cut(s) | 22, 77, 533, 925, 1042 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 486 |
| BspANI | GGCC | 1 cut(s) | 596 |
| BspCNI | CTCAG | 2 cut(s) | 289, 850 |
| BspLI | GGNNCC | 1 cut(s) | 79 |
| BspPI | GGATC | 3 cut(s) | 72, 85, 1037 |
| BsrDI | GCAATG | 1 cut(s) | 279 |
| BsrGI | TGTACA | 3 cut(s) | 468, 960, 968 |
| BsrI | ACTGG | 2 cut(s) | 919, 1124 |
| BssECI | CCNNGG | 3 cut(s) | 73, 226, 227 |
| BssMI | GATC | 5 cut(s) | 22, 77, 533, 925, 1042 |
| BssNAI | GTATAC | 1 cut(s) | 30 |
| Bst1107I | GTATAC | 1 cut(s) | 30 |
| Bst2UI | CCWGG | 3 cut(s) | 75, 228, 598 |
| Bst6I | CTCTTC | 1 cut(s) | 784 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1046 |
| BstAUI | TGTACA | 3 cut(s) | 468, 960, 968 |
| BstC8I | GCNNGC | 3 cut(s) | 154, 938, 1011 |
| BstDEI | CTNAG | 3 cut(s) | 297, 486, 858 |
| BstF5I | GGATG | 8 cut(s) | 138, 205, 276, 490, 529, 592, 963, 1109 |
| BstKTI | GATC | 5 cut(s) | 25, 80, 536, 928, 1045 |
| BstMBI | GATC | 5 cut(s) | 22, 77, 533, 925, 1042 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1019, 1046 |
| BstNI | CCWGG | 3 cut(s) | 75, 228, 598 |
| BstNSI | RCATGY | 4 cut(s) | 944, 969, 975, 1013 |
| BstSCI | CCNGG | 3 cut(s) | 73, 226, 596 |
| BstV1I | GCAGC | 7 cut(s) | 136, 244, 539, 561, 716, 809, 945 |
| BstX2I | RGATCY | 2 cut(s) | 77, 1042 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 630, 914 |
| BstYI | RGATCY | 2 cut(s) | 77, 1042 |
| BstZ17I | GTATAC | 1 cut(s) | 30 |
| BsuRI | GGCC | 1 cut(s) | 596 |
| BtsCI | GGATG | 8 cut(s) | 138, 205, 276, 490, 529, 592, 963, 1109 |
| Cac8I | GCNNGC | 3 cut(s) | 154, 938, 1011 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1046 |
| Csp6I | GTAC | 4 cut(s) | 337, 469, 961, 969 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 500, 535 |
| CviAII | CATG | 8 cut(s) | 340, 565, 742, 929, 941, 966, 972, 1010 |
| CviQI | GTAC | 4 cut(s) | 337, 469, 961, 969 |
| DdeI | CTNAG | 3 cut(s) | 297, 486, 858 |
| DpnI | GATC | 5 cut(s) | 24, 79, 535, 927, 1044 |
| DpnII | GATC | 5 cut(s) | 22, 77, 533, 925, 1042 |
| DraI | TTTAAA | 1 cut(s) | 678 |
| Eam1104I | CTCTTC | 1 cut(s) | 784 |
| EarI | CTCTTC | 1 cut(s) | 784 |
| EcoRII | CCWGG | 3 cut(s) | 73, 226, 596 |
| FaeI | CATG | 8 cut(s) | 343, 568, 745, 932, 944, 969, 975, 1013 |
| FaqI | GGGAC | 1 cut(s) | 737 |
| FatI | CATG | 8 cut(s) | 339, 564, 741, 928, 940, 965, 971, 1009 |
| FauNDI | CATATG | 2 cut(s) | 286, 465 |
| FblI | GTMKAC | 2 cut(s) | 29, 181 |
| Fnu4HI | GCNGC | 7 cut(s) | 150, 233, 528, 575, 705, 798, 934 |
| FokI | GGATG | 8 cut(s) | 145, 212, 283, 477, 536, 599, 970, 1096 |
| Fsp4HI | GCNGC | 7 cut(s) | 150, 233, 528, 575, 705, 798, 934 |
| FspBI | CTAG | 3 cut(s) | 531, 716, 867 |
| GluI | GCNGC | 7 cut(s) | 150, 233, 528, 575, 705, 798, 934 |
| GsuI | CTGGAG | 2 cut(s) | 353, 936 |
| HaeIII | GGCC | 1 cut(s) | 596 |
| Hin1II | CATG | 8 cut(s) | 343, 568, 745, 932, 944, 969, 975, 1013 |
| HinfI | GANTC | 4 cut(s) | 619, 656, 692, 1089 |
| HphI | GGTGA | 2 cut(s) | 127, 215 |
| Hpy166II | GTNNAC | 4 cut(s) | 30, 182, 949, 963 |
| Hpy188I | TCNGA | 1 cut(s) | 650 |
| Hpy188III | TCNNGA | 3 cut(s) | 332, 556, 623 |
| Hpy8I | GTNNAC | 4 cut(s) | 30, 182, 949, 963 |
| HpyAV | CCTTC | 5 cut(s) | 167, 394, 805, 972, 1084 |
| HpyCH4V | TGCA | 7 cut(s) | 156, 284, 290, 527, 577, 704, 1009 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1019, 1046 |
| HpyF3I | CTNAG | 3 cut(s) | 297, 486, 858 |
| Hsp92II | CATG | 8 cut(s) | 343, 568, 745, 932, 944, 969, 975, 1013 |
| Kzo9I | GATC | 5 cut(s) | 22, 77, 533, 925, 1042 |
| LmnI | GCTCC | 1 cut(s) | 571 |
| Lsp1109I | GCAGC | 7 cut(s) | 136, 244, 539, 561, 716, 809, 945 |
| LweI | GCATC | 2 cut(s) | 499, 514 |
| MaeI | CTAG | 3 cut(s) | 531, 716, 867 |
| MaeIII | GTNAC | 3 cut(s) | 44, 665, 693 |
| MalI | GATC | 5 cut(s) | 24, 79, 535, 927, 1044 |
| MboI | GATC | 5 cut(s) | 22, 77, 533, 925, 1042 |
| MboII | GAAGA | 5 cut(s) | 623, 665, 763, 801, 850 |
| MfeI | CAATTG | 2 cut(s) | 291, 581 |
| MflI | RGATCY | 2 cut(s) | 77, 1042 |
| MluCI | AATT | 5 cut(s) | 291, 368, 581, 909, 1102 |
| MlyI | GAGTC | 2 cut(s) | 701, 1098 |
| MmeI | TCCRAC | 1 cut(s) | 726 |
| MseI | TTAA | 4 cut(s) | 62, 677, 737, 834 |
| MslI | CAYNNNNRTG | 2 cut(s) | 805, 970 |
| MspA1I | CMGCKG | 1 cut(s) | 235 |
| MspR9I | CCNGG | 3 cut(s) | 75, 228, 598 |
| MunI | CAATTG | 2 cut(s) | 291, 581 |
| Mva1269I | GAATGC | 2 cut(s) | 706, 996 |
| MvaI | CCWGG | 3 cut(s) | 75, 228, 598 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1019, 1046 |
| NdeI | CATATG | 2 cut(s) | 286, 465 |
| NdeII | GATC | 5 cut(s) | 22, 77, 533, 925, 1042 |
| NlaIII | CATG | 8 cut(s) | 343, 568, 745, 932, 944, 969, 975, 1013 |
| NlaIV | GGNNCC | 1 cut(s) | 79 |
| NmuCI | GTSAC | 2 cut(s) | 665, 693 |
| NspI | RCATGY | 4 cut(s) | 944, 969, 975, 1013 |
| PaeI | GCATGC | 1 cut(s) | 1013 |
| PasI | CCCWGGG | 1 cut(s) | 227 |
| PciI | ACATGT | 2 cut(s) | 965, 971 |
| PctI | GAATGC | 2 cut(s) | 706, 996 |
| PfeI | GAWTC | 2 cut(s) | 619, 656 |
| PkrI | GCNGC | 7 cut(s) | 151, 234, 529, 576, 706, 799, 935 |
| PleI | GAGTC | 2 cut(s) | 700, 1097 |
| PpsI | GAGTC | 2 cut(s) | 700, 1097 |
| PscI | ACATGT | 2 cut(s) | 965, 971 |
| Psp6I | CCWGG | 3 cut(s) | 73, 226, 596 |
| PspGI | CCWGG | 3 cut(s) | 73, 226, 596 |
| PspN4I | GGNNCC | 1 cut(s) | 79 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1046 |
| PsuI | RGATCY | 2 cut(s) | 77, 1042 |
| PvuII | CAGCTG | 1 cut(s) | 235 |
| RsaI | GTAC | 4 cut(s) | 338, 470, 962, 970 |
| RsaNI | GTAC | 4 cut(s) | 337, 469, 961, 969 |
| RseI | CAYNNNNRTG | 2 cut(s) | 805, 970 |
| SaqAI | TTAA | 4 cut(s) | 62, 677, 737, 834 |
| SatI | GCNGC | 7 cut(s) | 150, 233, 528, 575, 705, 798, 934 |
| Sau3AI | GATC | 5 cut(s) | 22, 77, 533, 925, 1042 |
| SchI | GAGTC | 2 cut(s) | 701, 1098 |
| ScrFI | CCNGG | 3 cut(s) | 75, 228, 598 |
| SfaNI | GCATC | 2 cut(s) | 499, 514 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 805, 970 |
| SmlI | CTYRAG | 2 cut(s) | 406, 952 |
| SmoI | CTYRAG | 2 cut(s) | 406, 952 |
| SphI | GCATGC | 1 cut(s) | 1013 |
| Sse9I | AATT | 5 cut(s) | 291, 368, 581, 909, 1102 |
| SspMI | CTAG | 3 cut(s) | 531, 716, 867 |
| StyD4I | CCNGG | 3 cut(s) | 73, 226, 596 |
| TasI | AATT | 5 cut(s) | 291, 368, 581, 909, 1102 |
| TatI | WGTACW | 4 cut(s) | 336, 468, 960, 968 |
| TfiI | GAWTC | 2 cut(s) | 619, 656 |
| Tru1I | TTAA | 4 cut(s) | 62, 677, 737, 834 |
| Tru9I | TTAA | 4 cut(s) | 62, 677, 737, 834 |
| TseFI | GTSAC | 2 cut(s) | 665, 693 |
| TseI | GCWGC | 7 cut(s) | 149, 232, 527, 574, 704, 797, 933 |
| Tsp45I | GTSAC | 2 cut(s) | 665, 693 |
| TspDTI | ATGAA | 5 cut(s) | 17, 116, 356, 373, 1098 |
| TspGWI | ACGGA | 1 cut(s) | 712 |
| XceI | RCATGY | 4 cut(s) | 944, 969, 975, 1013 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 193 |
| XmiI | GTMKAC | 2 cut(s) | 29, 181 |
| XspI | CTAG | 3 cut(s) | 531, 716, 867 |