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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 256 |
| AciI | CCGC | 1 cut(s) | 8 |
| AclWI | GGATC | 1 cut(s) | 637 |
| AcoI | YGGCCR | 1 cut(s) | 304 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 266 |
| AgsI | TTSAA | 5 cut(s) | 202, 244, 497, 569, 583 |
| AjnI | CCWGG | 1 cut(s) | 142 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 489, 521 |
| AluBI | AGCT | 5 cut(s) | 62, 127, 190, 446, 562 |
| AluI | AGCT | 5 cut(s) | 62, 127, 190, 446, 562 |
| AlwI | GGATC | 1 cut(s) | 637 |
| AoxI | GGCC | 1 cut(s) | 304 |
| ApeKI | GCWGC | 2 cut(s) | 190, 446 |
| AspS9I | GGNCC | 2 cut(s) | 453, 546 |
| AvaII | GGWCC | 2 cut(s) | 453, 546 |
| BalI | TGGCCA | 1 cut(s) | 306 |
| BbvI | GCAGC | 2 cut(s) | 177, 433 |
| BccI | CCATC | 2 cut(s) | 242, 269 |
| BceAI | ACGGC | 1 cut(s) | 333 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 594, 628 |
| BciT130I | CCWGG | 1 cut(s) | 144 |
| BclI | TGATCA | 1 cut(s) | 517 |
| BfaI | CTAG | 1 cut(s) | 407 |
| BisI | GCNGC | 2 cut(s) | 191, 447 |
| BlsI | GCNGC | 2 cut(s) | 192, 448 |
| Bme1390I | CCNGG | 1 cut(s) | 144 |
| Bme18I | GGWCC | 2 cut(s) | 453, 546 |
| BmgT120I | GGNCC | 2 cut(s) | 453, 546 |
| BmiI | GGNNCC | 1 cut(s) | 404 |
| BmrFI | CCNGG | 1 cut(s) | 144 |
| BmsI | GCATC | 3 cut(s) | 322, 379, 620 |
| Bsa29I | ATCGAT | 1 cut(s) | 156 |
| BsaJI | CCNNGG | 2 cut(s) | 142, 366 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 266 |
| Bse1I | ACTGG | 2 cut(s) | 194, 307 |
| Bse3DI | GCAATG | 1 cut(s) | 354 |
| BseBI | CCWGG | 1 cut(s) | 144 |
| BseCI | ATCGAT | 1 cut(s) | 156 |
| BseDI | CCNNGG | 2 cut(s) | 142, 366 |
| BseGI | GGATG | 3 cut(s) | 16, 337, 430 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 266 |
| BseMI | GCAATG | 1 cut(s) | 354 |
| BseNI | ACTGG | 2 cut(s) | 194, 307 |
| BseXI | GCAGC | 2 cut(s) | 177, 433 |
| BshFI | GGCC | 1 cut(s) | 306 |
| BshVI | ATCGAT | 1 cut(s) | 156 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 266 |
| BsnI | GGCC | 1 cut(s) | 306 |
| Bsp143I | GATC | 5 cut(s) | 76, 134, 517, 586, 642 |
| Bsp19I | CCATGG | 1 cut(s) | 366 |
| BspACI | CCGC | 1 cut(s) | 8 |
| BspANI | GGCC | 1 cut(s) | 306 |
| BspDI | ATCGAT | 1 cut(s) | 156 |
| BspLI | GGNNCC | 1 cut(s) | 404 |
| BspPI | GGATC | 1 cut(s) | 637 |
| BsrDI | GCAATG | 1 cut(s) | 354 |
| BsrI | ACTGG | 2 cut(s) | 194, 307 |
| BssECI | CCNNGG | 2 cut(s) | 142, 366 |
| BssMI | GATC | 5 cut(s) | 76, 134, 517, 586, 642 |
| BssT1I | CCWWGG | 1 cut(s) | 366 |
| Bst2UI | CCWGG | 1 cut(s) | 144 |
| Bst4CI | ACNGT | 1 cut(s) | 302 |
| BstC8I | GCNNGC | 1 cut(s) | 229 |
| BstDSI | CCRYGG | 1 cut(s) | 366 |
| BstF5I | GGATG | 3 cut(s) | 16, 337, 430 |
| BstKTI | GATC | 5 cut(s) | 79, 137, 520, 589, 645 |
| BstMBI | GATC | 5 cut(s) | 76, 134, 517, 586, 642 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 47 |
| BstNI | CCWGG | 1 cut(s) | 144 |
| BstNSI | RCATGY | 2 cut(s) | 231, 603 |
| BstSCI | CCNGG | 1 cut(s) | 142 |
| BstV1I | GCAGC | 2 cut(s) | 177, 433 |
| Bsu15I | ATCGAT | 1 cut(s) | 156 |
| BsuRI | GGCC | 1 cut(s) | 306 |
| BsuTUI | ATCGAT | 1 cut(s) | 156 |
| BtgI | CCRYGG | 1 cut(s) | 366 |
| BtsCI | GGATG | 3 cut(s) | 16, 337, 430 |
| BtsIMutI | CAGTG | 1 cut(s) | 90 |
| Cac8I | GCNNGC | 1 cut(s) | 229 |
| Cfr13I | GGNCC | 2 cut(s) | 453, 546 |
| ClaI | ATCGAT | 1 cut(s) | 156 |
| CviAII | CATG | 4 cut(s) | 228, 367, 450, 600 |
| CviJI | RGCY | 7 cut(s) | 62, 127, 190, 306, 320, 446, 562 |
| CviKI_1 | RGCY | 7 cut(s) | 62, 127, 190, 306, 320, 446, 562 |
| DpnI | GATC | 5 cut(s) | 78, 136, 519, 588, 644 |
| DpnII | GATC | 5 cut(s) | 76, 134, 517, 586, 642 |
| EaeI | YGGCCR | 1 cut(s) | 304 |
| Eco130I | CCWWGG | 1 cut(s) | 366 |
| Eco47I | GGWCC | 2 cut(s) | 453, 546 |
| EcoRII | CCWGG | 1 cut(s) | 142 |
| EcoT14I | CCWWGG | 1 cut(s) | 366 |
| ErhI | CCWWGG | 1 cut(s) | 366 |
| FaeI | CATG | 4 cut(s) | 231, 370, 453, 603 |
| FatI | CATG | 4 cut(s) | 227, 366, 449, 599 |
| FauNDI | CATATG | 1 cut(s) | 361 |
| FbaI | TGATCA | 1 cut(s) | 517 |
| FblI | GTMKAC | 1 cut(s) | 256 |
| Fnu4HI | GCNGC | 2 cut(s) | 191, 447 |
| FokI | GGATG | 3 cut(s) | 23, 344, 437 |
| Fsp4HI | GCNGC | 2 cut(s) | 191, 447 |
| FspBI | CTAG | 1 cut(s) | 407 |
| GluI | GCNGC | 2 cut(s) | 191, 447 |
| HaeIII | GGCC | 1 cut(s) | 306 |
| Hin1II | CATG | 4 cut(s) | 231, 370, 453, 603 |
| Hpy166II | GTNNAC | 2 cut(s) | 257, 430 |
| Hpy188III | TCNNGA | 2 cut(s) | 182, 202 |
| Hpy8I | GTNNAC | 2 cut(s) | 257, 430 |
| HpyAV | CCTTC | 2 cut(s) | 10, 466 |
| HpyCH4III | ACNGT | 1 cut(s) | 302 |
| HpyCH4V | TGCA | 5 cut(s) | 231, 335, 359, 449, 605 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 47 |
| Hsp92II | CATG | 4 cut(s) | 231, 370, 453, 603 |
| Ksp22I | TGATCA | 1 cut(s) | 517 |
| Kzo9I | GATC | 5 cut(s) | 76, 134, 517, 586, 642 |
| LmnI | GCTCC | 2 cut(s) | 224, 489 |
| LpnPI | CCDG | 8 cut(s) | 94, 129, 156, 195, 207, 320, 385, 501 |
| Lsp1109I | GCAGC | 2 cut(s) | 177, 433 |
| LweI | GCATC | 3 cut(s) | 322, 379, 620 |
| MaeI | CTAG | 1 cut(s) | 407 |
| MaeIII | GTNAC | 3 cut(s) | 167, 296, 464 |
| MalI | GATC | 5 cut(s) | 78, 136, 519, 588, 644 |
| MboI | GATC | 5 cut(s) | 76, 134, 517, 586, 642 |
| MfeI | CAATTG | 1 cut(s) | 590 |
| MlsI | TGGCCA | 1 cut(s) | 306 |
| MluCI | AATT | 3 cut(s) | 163, 374, 590 |
| MluNI | TGGCCA | 1 cut(s) | 306 |
| MnlI | CCTC | 1 cut(s) | 528 |
| Mox20I | TGGCCA | 1 cut(s) | 306 |
| MscI | TGGCCA | 1 cut(s) | 306 |
| MseI | TTAA | 2 cut(s) | 555, 633 |
| Msp20I | TGGCCA | 1 cut(s) | 306 |
| MspR9I | CCNGG | 1 cut(s) | 144 |
| MunI | CAATTG | 1 cut(s) | 590 |
| MvaI | CCWGG | 1 cut(s) | 144 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 47 |
| NcoI | CCATGG | 1 cut(s) | 366 |
| NdeI | CATATG | 1 cut(s) | 361 |
| NdeII | GATC | 5 cut(s) | 76, 134, 517, 586, 642 |
| NlaIII | CATG | 4 cut(s) | 231, 370, 453, 603 |
| NlaIV | GGNNCC | 1 cut(s) | 404 |
| NmuCI | GTSAC | 2 cut(s) | 167, 464 |
| NspI | RCATGY | 2 cut(s) | 231, 603 |
| PaeI | GCATGC | 1 cut(s) | 231 |
| PflFI | GACNNNGTC | 1 cut(s) | 619 |
| PkrI | GCNGC | 2 cut(s) | 192, 448 |
| Psp6I | CCWGG | 1 cut(s) | 142 |
| PspGI | CCWGG | 1 cut(s) | 142 |
| PspN4I | GGNNCC | 1 cut(s) | 404 |
| PspPI | GGNCC | 2 cut(s) | 453, 546 |
| PsyI | GACNNNGTC | 1 cut(s) | 619 |
| SaqAI | TTAA | 2 cut(s) | 555, 633 |
| SatI | GCNGC | 2 cut(s) | 191, 447 |
| Sau3AI | GATC | 5 cut(s) | 76, 134, 517, 586, 642 |
| Sau96I | GGNCC | 2 cut(s) | 453, 546 |
| ScrFI | CCNGG | 1 cut(s) | 144 |
| SetI | ASST | 9 cut(s) | 27, 64, 72, 129, 192, 241, 448, 458, 564 |
| SfaNI | GCATC | 3 cut(s) | 322, 379, 620 |
| SinI | GGWCC | 2 cut(s) | 453, 546 |
| SphI | GCATGC | 1 cut(s) | 231 |
| Sse9I | AATT | 3 cut(s) | 163, 374, 590 |
| SsiI | CCGC | 1 cut(s) | 8 |
| SspMI | CTAG | 1 cut(s) | 407 |
| StyD4I | CCNGG | 1 cut(s) | 142 |
| StyI | CCWWGG | 1 cut(s) | 366 |
| TaaI | ACNGT | 1 cut(s) | 302 |
| TaqI | TCGA | 2 cut(s) | 156, 614 |
| TaqII | GACCGA | 1 cut(s) | 69 |
| TasI | AATT | 3 cut(s) | 163, 374, 590 |
| Tru1I | TTAA | 2 cut(s) | 555, 633 |
| Tru9I | TTAA | 2 cut(s) | 555, 633 |
| TscAI | CASTG | 1 cut(s) | 90 |
| TseFI | GTSAC | 2 cut(s) | 167, 464 |
| TseI | GCWGC | 2 cut(s) | 190, 446 |
| Tsp45I | GTSAC | 2 cut(s) | 167, 464 |
| TspDTI | ATGAA | 2 cut(s) | 114, 448 |
| TspRI | CASTG | 1 cut(s) | 90 |
| Tth111I | GACNNNGTC | 1 cut(s) | 619 |
| VpaK11BI | GGWCC | 2 cut(s) | 453, 546 |
| XceI | RCATGY | 2 cut(s) | 231, 603 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 373 |
| XmiI | GTMKAC | 1 cut(s) | 256 |
| XspI | CTAG | 1 cut(s) | 407 |