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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 549 |
| AciI | CCGC | 1 cut(s) | 356 |
| AcsI | RAATTY | 1 cut(s) | 334 |
| AcuI | CTGAAG | 1 cut(s) | 644 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 470, 668 |
| AflII | CTTAAG | 1 cut(s) | 239 |
| AgsI | TTSAA | 3 cut(s) | 211, 343, 382 |
| AjnI | CCWGG | 1 cut(s) | 329 |
| AluBI | AGCT | 4 cut(s) | 238, 260, 429, 452 |
| AluI | AGCT | 4 cut(s) | 238, 260, 429, 452 |
| Alw21I | GWGCWC | 2 cut(s) | 323, 363 |
| ApeKI | GCWGC | 2 cut(s) | 257, 566 |
| ApoI | RAATTY | 1 cut(s) | 334 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 159 |
| AsuNHI | GCTAGC | 1 cut(s) | 170 |
| BanII | GRGCYC | 1 cut(s) | 393 |
| Bbv12I | GWGCWC | 2 cut(s) | 323, 363 |
| BbvI | GCAGC | 2 cut(s) | 269, 553 |
| BciT130I | CCWGG | 1 cut(s) | 331 |
| BfaI | CTAG | 3 cut(s) | 171, 453, 593 |
| BfmI | CTRYAG | 1 cut(s) | 9 |
| BfrI | CTTAAG | 1 cut(s) | 239 |
| BisI | GCNGC | 2 cut(s) | 258, 567 |
| BlsI | GCNGC | 2 cut(s) | 259, 568 |
| Bme1390I | CCNGG | 1 cut(s) | 331 |
| BmrFI | CCNGG | 1 cut(s) | 331 |
| BmsI | GCATC | 1 cut(s) | 450 |
| BmtI | GCTAGC | 1 cut(s) | 174 |
| BpmI | CTGGAG | 1 cut(s) | 385 |
| BsaJI | CCNNGG | 1 cut(s) | 667 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 470, 668 |
| Bse1I | ACTGG | 1 cut(s) | 368 |
| Bse3DI | GCAATG | 1 cut(s) | 418 |
| BseBI | CCWGG | 1 cut(s) | 331 |
| BseDI | CCNNGG | 1 cut(s) | 667 |
| BseGI | GGATG | 3 cut(s) | 82, 511, 613 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 470, 668 |
| BseMI | GCAATG | 1 cut(s) | 418 |
| BseNI | ACTGG | 1 cut(s) | 368 |
| BseRI | GAGGAG | 1 cut(s) | 538 |
| BseXI | GCAGC | 2 cut(s) | 269, 553 |
| BseYI | CCCAGC | 1 cut(s) | 448 |
| BsiHKAI | GWGCWC | 2 cut(s) | 323, 363 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 470, 668 |
| Bsp1286I | GDGCHC | 3 cut(s) | 323, 363, 393 |
| Bsp143I | GATC | 2 cut(s) | 266, 371 |
| BspACI | CCGC | 1 cut(s) | 356 |
| BspHI | TCATGA | 1 cut(s) | 114 |
| BspOI | GCTAGC | 1 cut(s) | 174 |
| BspTI | CTTAAG | 1 cut(s) | 239 |
| BsrDI | GCAATG | 1 cut(s) | 418 |
| BsrI | ACTGG | 1 cut(s) | 368 |
| BssECI | CCNNGG | 1 cut(s) | 667 |
| BssMI | GATC | 2 cut(s) | 266, 371 |
| Bst2UI | CCWGG | 1 cut(s) | 331 |
| BstAFI | CTTAAG | 1 cut(s) | 239 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 566 |
| BstC8I | GCNNGC | 3 cut(s) | 172, 354, 639 |
| BstDEI | CTNAG | 3 cut(s) | 315, 506, 579 |
| BstDSI | CCRYGG | 1 cut(s) | 667 |
| BstF5I | GGATG | 3 cut(s) | 82, 511, 613 |
| BstKTI | GATC | 2 cut(s) | 269, 374 |
| BstMBI | GATC | 2 cut(s) | 266, 371 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 358, 566 |
| BstNI | CCWGG | 1 cut(s) | 331 |
| BstNSI | RCATGY | 2 cut(s) | 560, 637 |
| BstSCI | CCNGG | 1 cut(s) | 329 |
| BstSFI | CTRYAG | 1 cut(s) | 9 |
| BstV1I | GCAGC | 2 cut(s) | 269, 553 |
| BtgI | CCRYGG | 1 cut(s) | 667 |
| BtsCI | GGATG | 3 cut(s) | 82, 511, 613 |
| BtsIMutI | CAGTG | 2 cut(s) | 361, 620 |
| Cac8I | GCNNGC | 3 cut(s) | 172, 354, 639 |
| CciI | TCATGA | 1 cut(s) | 114 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 7 cut(s) | 15, 48, 54, 115, 549, 557, 634 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 3 cut(s) | 315, 506, 579 |
| DpnI | GATC | 2 cut(s) | 268, 373 |
| DpnII | GATC | 2 cut(s) | 266, 371 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 549 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 549 |
| Eco24I | GRGCYC | 1 cut(s) | 393 |
| Eco32I | GATATC | 1 cut(s) | 403 |
| Eco57I | CTGAAG | 1 cut(s) | 644 |
| EcoRII | CCWGG | 1 cut(s) | 329 |
| EcoRV | GATATC | 1 cut(s) | 403 |
| EcoT38I | GRGCYC | 1 cut(s) | 393 |
| FaeI | CATG | 7 cut(s) | 18, 51, 57, 118, 552, 560, 637 |
| FatI | CATG | 7 cut(s) | 14, 47, 53, 114, 548, 556, 633 |
| FauNDI | CATATG | 1 cut(s) | 643 |
| Fnu4HI | GCNGC | 2 cut(s) | 258, 567 |
| FokI | GGATG | 3 cut(s) | 89, 498, 620 |
| FriOI | GRGCYC | 1 cut(s) | 393 |
| Fsp4HI | GCNGC | 2 cut(s) | 258, 567 |
| FspBI | CTAG | 3 cut(s) | 171, 453, 593 |
| GluI | GCNGC | 2 cut(s) | 258, 567 |
| GsaI | CCCAGC | 1 cut(s) | 452 |
| GsuI | CTGGAG | 1 cut(s) | 385 |
| Hin1II | CATG | 7 cut(s) | 18, 51, 57, 118, 552, 560, 637 |
| HinfI | GANTC | 3 cut(s) | 295, 302, 442 |
| Hpy166II | GTNNAC | 1 cut(s) | 554 |
| Hpy188III | TCNNGA | 4 cut(s) | 115, 233, 299, 340 |
| Hpy8I | GTNNAC | 1 cut(s) | 554 |
| HpyAV | CCTTC | 1 cut(s) | 212 |
| HpyCH4V | TGCA | 4 cut(s) | 188, 560, 569, 641 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 358, 566 |
| HpyF3I | CTNAG | 3 cut(s) | 315, 506, 579 |
| Hsp92II | CATG | 7 cut(s) | 18, 51, 57, 118, 552, 560, 637 |
| Kzo9I | GATC | 2 cut(s) | 266, 371 |
| LmnI | GCTCC | 1 cut(s) | 358 |
| LpnPI | CCDG | 7 cut(s) | 246, 316, 343, 349, 366, 462, 663 |
| Lsp1109I | GCAGC | 2 cut(s) | 269, 553 |
| LweI | GCATC | 1 cut(s) | 450 |
| MaeI | CTAG | 3 cut(s) | 171, 453, 593 |
| MaeIII | GTNAC | 1 cut(s) | 119 |
| MalI | GATC | 2 cut(s) | 268, 373 |
| MboI | GATC | 2 cut(s) | 266, 371 |
| MboII | GAAGA | 3 cut(s) | 276, 469, 637 |
| MfeI | CAATTG | 1 cut(s) | 561 |
| MhlI | GDGCHC | 3 cut(s) | 323, 363, 393 |
| MluCI | AATT | 5 cut(s) | 155, 205, 334, 465, 561 |
| MmeI | TCCRAC | 1 cut(s) | 459 |
| MnlI | CCTC | 5 cut(s) | 136, 475, 516, 519, 604 |
| MroXI | GAANNNNTTC | 1 cut(s) | 159 |
| MseI | TTAA | 4 cut(s) | 63, 240, 291, 411 |
| MslI | CAYNNNNRTG | 1 cut(s) | 52 |
| MspA1I | CMGCKG | 2 cut(s) | 260, 356 |
| MspCI | CTTAAG | 1 cut(s) | 239 |
| MspR9I | CCNGG | 1 cut(s) | 331 |
| MunI | CAATTG | 1 cut(s) | 561 |
| MvaI | CCWGG | 1 cut(s) | 331 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 358, 566 |
| NdeI | CATATG | 1 cut(s) | 643 |
| NdeII | GATC | 2 cut(s) | 266, 371 |
| NheI | GCTAGC | 1 cut(s) | 170 |
| NlaIII | CATG | 7 cut(s) | 18, 51, 57, 118, 552, 560, 637 |
| NmuCI | GTSAC | 1 cut(s) | 119 |
| NspI | RCATGY | 2 cut(s) | 560, 637 |
| PagI | TCATGA | 1 cut(s) | 114 |
| PdmI | GAANNNNTTC | 1 cut(s) | 159 |
| PfeI | GAWTC | 3 cut(s) | 295, 302, 442 |
| PkrI | GCNGC | 2 cut(s) | 259, 568 |
| Psp6I | CCWGG | 1 cut(s) | 329 |
| PspFI | CCCAGC | 1 cut(s) | 448 |
| PspGI | CCWGG | 1 cut(s) | 329 |
| PvuII | CAGCTG | 1 cut(s) | 260 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| RseI | CAYNNNNRTG | 1 cut(s) | 52 |
| SaqAI | TTAA | 4 cut(s) | 63, 240, 291, 411 |
| SatI | GCNGC | 2 cut(s) | 258, 567 |
| Sau3AI | GATC | 2 cut(s) | 266, 371 |
| ScrFI | CCNGG | 1 cut(s) | 331 |
| SduI | GDGCHC | 3 cut(s) | 323, 363, 393 |
| SetI | ASST | 6 cut(s) | 240, 262, 387, 431, 454, 530 |
| SfaNI | GCATC | 1 cut(s) | 450 |
| SfcI | CTRYAG | 1 cut(s) | 9 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 52 |
| SmlI | CTYRAG | 1 cut(s) | 239 |
| SmoI | CTYRAG | 1 cut(s) | 239 |
| Sse9I | AATT | 5 cut(s) | 155, 205, 334, 465, 561 |
| SsiI | CCGC | 1 cut(s) | 356 |
| SspI | AATATT | 1 cut(s) | 573 |
| SspMI | CTAG | 3 cut(s) | 171, 453, 593 |
| StyD4I | CCNGG | 1 cut(s) | 329 |
| TaqII | GACCGA | 1 cut(s) | 218 |
| TasI | AATT | 5 cut(s) | 155, 205, 334, 465, 561 |
| TfiI | GAWTC | 3 cut(s) | 295, 302, 442 |
| Tru1I | TTAA | 4 cut(s) | 63, 240, 291, 411 |
| Tru9I | TTAA | 4 cut(s) | 63, 240, 291, 411 |
| TscAI | CASTG | 2 cut(s) | 368, 627 |
| TseFI | GTSAC | 1 cut(s) | 119 |
| TseI | GCWGC | 2 cut(s) | 257, 566 |
| Tsp45I | GTSAC | 1 cut(s) | 119 |
| TspDTI | ATGAA | 3 cut(s) | 103, 299, 660 |
| TspGWI | ACGGA | 1 cut(s) | 656 |
| TspRI | CASTG | 2 cut(s) | 368, 627 |
| Vha464I | CTTAAG | 1 cut(s) | 239 |
| XapI | RAATTY | 1 cut(s) | 334 |
| XceI | RCATGY | 2 cut(s) | 560, 637 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 360 |
| XmnI | GAANNNNTTC | 1 cut(s) | 159 |
| XspI | CTAG | 3 cut(s) | 171, 453, 593 |