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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 224 |
| AccB1I | GGYRCC | 1 cut(s) | 224 |
| AccI | GTMKAC | 2 cut(s) | 159, 726 |
| AccII | CGCG | 2 cut(s) | 7, 9 |
| AclWI | GGATC | 2 cut(s) | 267, 280 |
| AcsI | RAATTY | 3 cut(s) | 283, 652, 690 |
| AfaI | GTAC | 5 cut(s) | 151, 219, 226, 327, 464 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 535, 857 |
| AgsI | TTSAA | 9 cut(s) | 64, 128, 137, 236, 356, 550, 590, 650, 1028 |
| AjnI | CCWGG | 3 cut(s) | 228, 844, 1011 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 243, 275 |
| AleI | CACNNNNGTG | 1 cut(s) | 903 |
| AluBI | AGCT | 7 cut(s) | 500, 581, 593, 944, 1058, 1094, 1127 |
| AluI | AGCT | 7 cut(s) | 500, 581, 593, 944, 1058, 1094, 1127 |
| Alw26I | GTCTC | 1 cut(s) | 1097 |
| AlwI | GGATC | 2 cut(s) | 267, 280 |
| AoxI | GGCC | 5 cut(s) | 518, 698, 800, 842, 989 |
| ApeKI | GCWGC | 1 cut(s) | 581 |
| ApoI | RAATTY | 3 cut(s) | 283, 652, 690 |
| Asp718I | GGTACC | 1 cut(s) | 224 |
| AspLEI | GCGC | 2 cut(s) | 7, 9 |
| AspS9I | GGNCC | 4 cut(s) | 698, 800, 842, 848 |
| AsuC2I | CCSGG | 1 cut(s) | 530 |
| AsuHPI | GGTGA | 5 cut(s) | 436, 776, 839, 917, 976 |
| AvaII | GGWCC | 1 cut(s) | 848 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 216, 249 |
| BamHI | GGATCC | 1 cut(s) | 272 |
| BanI | GGYRCC | 1 cut(s) | 224 |
| BbsI | GAAGAC | 2 cut(s) | 135, 988 |
| BbvI | GCAGC | 1 cut(s) | 568 |
| BccI | CCATC | 8 cut(s) | 198, 258, 398, 415, 595, 728, 734, 755 |
| BciT130I | CCWGG | 3 cut(s) | 230, 846, 1013 |
| BcnI | CCSGG | 1 cut(s) | 530 |
| BcoDI | GTCTC | 1 cut(s) | 1097 |
| BfaI | CTAG | 4 cut(s) | 564, 869, 996, 1095 |
| BfmI | CTRYAG | 2 cut(s) | 414, 683 |
| BisI | GCNGC | 1 cut(s) | 582 |
| BlsI | GCNGC | 1 cut(s) | 583 |
| Bme1390I | CCNGG | 4 cut(s) | 230, 530, 846, 1013 |
| Bme18I | GGWCC | 1 cut(s) | 848 |
| BmgT120I | GGNCC | 4 cut(s) | 698, 800, 842, 848 |
| BmiI | GGNNCC | 4 cut(s) | 145, 226, 274, 862 |
| BmrFI | CCNGG | 4 cut(s) | 230, 530, 846, 1013 |
| BmsI | GCATC | 1 cut(s) | 661 |
| BpiI | GAAGAC | 2 cut(s) | 135, 988 |
| BpuMI | CCSGG | 1 cut(s) | 530 |
| BsaJI | CCNNGG | 4 cut(s) | 163, 176, 228, 986 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 535, 857 |
| Bse1I | ACTGG | 1 cut(s) | 147 |
| BseBI | CCWGG | 3 cut(s) | 230, 846, 1013 |
| BseDI | CCNNGG | 4 cut(s) | 163, 176, 228, 986 |
| BseGI | GGATG | 9 cut(s) | 88, 209, 269, 721, 745, 751, 766, 817, 1090 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 535, 857 |
| BseMII | CTCAG | 3 cut(s) | 12, 936, 1098 |
| BseNI | ACTGG | 1 cut(s) | 147 |
| BsePI | GCGCGC | 1 cut(s) | 5 |
| BseRI | GAGGAG | 1 cut(s) | 782 |
| BseXI | GCAGC | 1 cut(s) | 568 |
| Bsh1236I | CGCG | 2 cut(s) | 7, 9 |
| BshFI | GGCC | 5 cut(s) | 520, 700, 802, 844, 991 |
| BshNI | GGYRCC | 1 cut(s) | 224 |
| BsiSI | CCGG | 1 cut(s) | 530 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 535, 857 |
| BsmAI | GTCTC | 1 cut(s) | 1097 |
| BsmI | GAATGC | 2 cut(s) | 433, 639 |
| BsnI | GGCC | 5 cut(s) | 520, 700, 802, 844, 991 |
| Bsp1407I | TGTACA | 1 cut(s) | 462 |
| Bsp143I | GATC | 2 cut(s) | 272, 880 |
| Bsp19I | CCATGG | 2 cut(s) | 163, 176 |
| BspANI | GGCC | 5 cut(s) | 520, 700, 802, 844, 991 |
| BspCNI | CTCAG | 3 cut(s) | 13, 937, 1099 |
| BspFNI | CGCG | 2 cut(s) | 7, 9 |
| BspHI | TCATGA | 1 cut(s) | 493 |
| BspLI | GGNNCC | 4 cut(s) | 145, 226, 274, 862 |
| BspPI | GGATC | 2 cut(s) | 267, 280 |
| BspT107I | GGYRCC | 1 cut(s) | 224 |
| BsrGI | TGTACA | 1 cut(s) | 462 |
| BsrI | ACTGG | 1 cut(s) | 147 |
| BssECI | CCNNGG | 4 cut(s) | 163, 176, 228, 986 |
| BssHII | GCGCGC | 1 cut(s) | 5 |
| BssMI | GATC | 2 cut(s) | 272, 880 |
| BssNAI | GTATAC | 1 cut(s) | 160 |
| BssT1I | CCWWGG | 3 cut(s) | 163, 176, 986 |
| Bst1107I | GTATAC | 1 cut(s) | 160 |
| Bst2UI | CCWGG | 3 cut(s) | 230, 846, 1013 |
| Bst4CI | ACNGT | 1 cut(s) | 121 |
| Bst6I | CTCTTC | 4 cut(s) | 440, 1023, 1071, 1173 |
| BstAUI | TGTACA | 1 cut(s) | 462 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 702 |
| BstDEI | CTNAG | 4 cut(s) | 21, 730, 945, 1107 |
| BstDSI | CCRYGG | 2 cut(s) | 163, 176 |
| BstF5I | GGATG | 9 cut(s) | 88, 209, 269, 721, 745, 751, 766, 817, 1090 |
| BstFNI | CGCG | 2 cut(s) | 7, 9 |
| BstHHI | GCGC | 2 cut(s) | 7, 9 |
| BstKTI | GATC | 2 cut(s) | 275, 883 |
| BstMAI | GTCTC | 1 cut(s) | 1097 |
| BstMBI | GATC | 2 cut(s) | 272, 880 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 590 |
| BstNI | CCWGG | 3 cut(s) | 230, 846, 1013 |
| BstSCI | CCNGG | 4 cut(s) | 228, 528, 844, 1011 |
| BstSFI | CTRYAG | 2 cut(s) | 414, 683 |
| BstUI | CGCG | 2 cut(s) | 7, 9 |
| BstV1I | GCAGC | 1 cut(s) | 568 |
| BstV2I | GAAGAC | 2 cut(s) | 135, 988 |
| BstX2I | RGATCY | 1 cut(s) | 272 |
| BstYI | RGATCY | 1 cut(s) | 272 |
| BstZ17I | GTATAC | 1 cut(s) | 160 |
| BsuRI | GGCC | 5 cut(s) | 520, 700, 802, 844, 991 |
| BtgI | CCRYGG | 2 cut(s) | 163, 176 |
| BtsCI | GGATG | 9 cut(s) | 88, 209, 269, 721, 745, 751, 766, 817, 1090 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 702 |
| CciI | TCATGA | 1 cut(s) | 493 |
| CfoI | GCGC | 2 cut(s) | 7, 9 |
| Cfr13I | GGNCC | 4 cut(s) | 698, 800, 842, 848 |
| Csp6I | GTAC | 5 cut(s) | 150, 218, 225, 326, 463 |
| CviAII | CATG | 5 cut(s) | 164, 177, 289, 494, 901 |
| CviQI | GTAC | 5 cut(s) | 150, 218, 225, 326, 463 |
| DdeI | CTNAG | 4 cut(s) | 21, 730, 945, 1107 |
| DpnI | GATC | 2 cut(s) | 274, 882 |
| DpnII | GATC | 2 cut(s) | 272, 880 |
| DraI | TTTAAA | 2 cut(s) | 100, 1003 |
| Eam1104I | CTCTTC | 4 cut(s) | 440, 1023, 1071, 1173 |
| EarI | CTCTTC | 4 cut(s) | 440, 1023, 1071, 1173 |
| Eco130I | CCWWGG | 3 cut(s) | 163, 176, 986 |
| Eco147I | AGGCCT | 1 cut(s) | 520 |
| Eco47I | GGWCC | 1 cut(s) | 848 |
| EcoRII | CCWGG | 3 cut(s) | 228, 844, 1011 |
| EcoT14I | CCWWGG | 3 cut(s) | 163, 176, 986 |
| ErhI | CCWWGG | 3 cut(s) | 163, 176, 986 |
| FaeI | CATG | 5 cut(s) | 167, 180, 292, 497, 904 |
| FatI | CATG | 5 cut(s) | 163, 176, 288, 493, 900 |
| FblI | GTMKAC | 2 cut(s) | 159, 726 |
| Fnu4HI | GCNGC | 1 cut(s) | 582 |
| FokI | GGATG | 9 cut(s) | 95, 216, 276, 728, 752, 758, 773, 824, 1097 |
| Fsp4HI | GCNGC | 1 cut(s) | 582 |
| FspBI | CTAG | 4 cut(s) | 564, 869, 996, 1095 |
| GlaI | GCGC | 2 cut(s) | 6, 8 |
| GluI | GCNGC | 1 cut(s) | 582 |
| HaeIII | GGCC | 5 cut(s) | 520, 700, 802, 844, 991 |
| HapII | CCGG | 1 cut(s) | 530 |
| HhaI | GCGC | 2 cut(s) | 7, 9 |
| Hin1II | CATG | 5 cut(s) | 167, 180, 292, 497, 904 |
| Hin6I | GCGC | 2 cut(s) | 5, 7 |
| HinP1I | GCGC | 2 cut(s) | 5, 7 |
| HinfI | GANTC | 1 cut(s) | 541 |
| HpaII | CCGG | 1 cut(s) | 530 |
| HphI | GGTGA | 5 cut(s) | 436, 776, 839, 917, 976 |
| Hpy166II | GTNNAC | 4 cut(s) | 152, 160, 463, 727 |
| Hpy188I | TCNGA | 3 cut(s) | 393, 880, 980 |
| Hpy188III | TCNNGA | 3 cut(s) | 77, 276, 494 |
| Hpy8I | GTNNAC | 4 cut(s) | 152, 160, 463, 727 |
| HpyAV | CCTTC | 2 cut(s) | 58, 954 |
| HpyCH4III | ACNGT | 1 cut(s) | 121 |
| HpyCH4V | TGCA | 4 cut(s) | 374, 431, 898, 1166 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 590 |
| HpyF3I | CTNAG | 4 cut(s) | 21, 730, 945, 1107 |
| Hsp92II | CATG | 5 cut(s) | 167, 180, 292, 497, 904 |
| HspAI | GCGC | 2 cut(s) | 5, 7 |
| KpnI | GGTACC | 1 cut(s) | 228 |
| Kzo9I | GATC | 2 cut(s) | 272, 880 |
| Lsp1109I | GCAGC | 1 cut(s) | 568 |
| LweI | GCATC | 1 cut(s) | 661 |
| MaeI | CTAG | 4 cut(s) | 564, 869, 996, 1095 |
| MaeIII | GTNAC | 1 cut(s) | 12 |
| MalI | GATC | 2 cut(s) | 274, 882 |
| MboI | GATC | 2 cut(s) | 272, 880 |
| MfeI | CAATTG | 2 cut(s) | 198, 705 |
| MflI | RGATCY | 1 cut(s) | 272 |
| MmeI | TCCRAC | 2 cut(s) | 250, 1062 |
| MseI | TTAA | 8 cut(s) | 47, 99, 794, 807, 921, 1002, 1140, 1155 |
| MslI | CAYNNNNRTG | 1 cut(s) | 903 |
| MspI | CCGG | 1 cut(s) | 530 |
| MspR9I | CCNGG | 4 cut(s) | 230, 530, 846, 1013 |
| MunI | CAATTG | 2 cut(s) | 198, 705 |
| Mva1269I | GAATGC | 2 cut(s) | 433, 639 |
| MvaI | CCWGG | 3 cut(s) | 230, 846, 1013 |
| MvnI | CGCG | 2 cut(s) | 7, 9 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 590 |
| NciI | CCSGG | 1 cut(s) | 530 |
| NcoI | CCATGG | 2 cut(s) | 163, 176 |
| NdeII | GATC | 2 cut(s) | 272, 880 |
| NlaIII | CATG | 5 cut(s) | 167, 180, 292, 497, 904 |
| NlaIV | GGNNCC | 4 cut(s) | 145, 226, 274, 862 |
| NmuCI | GTSAC | 1 cut(s) | 12 |
| OliI | CACNNNNGTG | 1 cut(s) | 903 |
| PagI | TCATGA | 1 cut(s) | 493 |
| PauI | GCGCGC | 1 cut(s) | 5 |
| PceI | AGGCCT | 1 cut(s) | 520 |
| PctI | GAATGC | 2 cut(s) | 433, 639 |
| PfeI | GAWTC | 1 cut(s) | 541 |
| PflFI | GACNNNGTC | 1 cut(s) | 852 |
| PkrI | GCNGC | 1 cut(s) | 583 |
| Psp6I | CCWGG | 3 cut(s) | 228, 844, 1011 |
| PspGI | CCWGG | 3 cut(s) | 228, 844, 1011 |
| PspN4I | GGNNCC | 4 cut(s) | 145, 226, 274, 862 |
| PspPI | GGNCC | 4 cut(s) | 698, 800, 842, 848 |
| PsuI | RGATCY | 1 cut(s) | 272 |
| PsyI | GACNNNGTC | 1 cut(s) | 852 |
| PteI | GCGCGC | 1 cut(s) | 5 |
| RsaI | GTAC | 5 cut(s) | 151, 219, 226, 327, 464 |
| RsaNI | GTAC | 5 cut(s) | 150, 218, 225, 326, 463 |
| RseI | CAYNNNNRTG | 1 cut(s) | 903 |
| SaqAI | TTAA | 8 cut(s) | 47, 99, 794, 807, 921, 1002, 1140, 1155 |
| SatI | GCNGC | 1 cut(s) | 582 |
| Sau3AI | GATC | 2 cut(s) | 272, 880 |
| Sau96I | GGNCC | 4 cut(s) | 698, 800, 842, 848 |
| ScrFI | CCNGG | 4 cut(s) | 230, 530, 846, 1013 |
| SfaNI | GCATC | 1 cut(s) | 661 |
| SfcI | CTRYAG | 2 cut(s) | 414, 683 |
| SinI | GGWCC | 1 cut(s) | 848 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 903 |
| SseBI | AGGCCT | 1 cut(s) | 520 |
| SspMI | CTAG | 4 cut(s) | 564, 869, 996, 1095 |
| StuI | AGGCCT | 1 cut(s) | 520 |
| StyD4I | CCNGG | 4 cut(s) | 228, 528, 844, 1011 |
| StyI | CCWWGG | 3 cut(s) | 163, 176, 986 |
| TaaI | ACNGT | 1 cut(s) | 121 |
| TaqI | TCGA | 1 cut(s) | 190 |
| TatI | WGTACW | 3 cut(s) | 149, 217, 462 |
| TfiI | GAWTC | 1 cut(s) | 541 |
| Tru1I | TTAA | 8 cut(s) | 47, 99, 794, 807, 921, 1002, 1140, 1155 |
| Tru9I | TTAA | 8 cut(s) | 47, 99, 794, 807, 921, 1002, 1140, 1155 |
| TseFI | GTSAC | 1 cut(s) | 12 |
| TseI | GCWGC | 1 cut(s) | 581 |
| Tsp45I | GTSAC | 1 cut(s) | 12 |
| TspDTI | ATGAA | 5 cut(s) | 277, 315, 510, 1068, 1101 |
| Tth111I | GACNNNGTC | 1 cut(s) | 852 |
| VpaK11BI | GGWCC | 1 cut(s) | 848 |
| XapI | RAATTY | 3 cut(s) | 283, 652, 690 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1130 |
| XmiI | GTMKAC | 2 cut(s) | 159, 726 |
| XspI | CTAG | 4 cut(s) | 564, 869, 996, 1095 |