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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 263 |
| AgsI | TTSAA | 1 cut(s) | 328 |
| AhlI | ACTAGT | 1 cut(s) | 278 |
| AjnI | CCWGG | 1 cut(s) | 162 |
| AluBI | AGCT | 3 cut(s) | 242, 274, 386 |
| AluI | AGCT | 3 cut(s) | 242, 274, 386 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 395 |
| AoxI | GGCC | 2 cut(s) | 165, 374 |
| ApeKI | GCWGC | 3 cut(s) | 320, 386, 389 |
| AspS9I | GGNCC | 1 cut(s) | 39 |
| AsuHPI | GGTGA | 3 cut(s) | 31, 140, 206 |
| AvaII | GGWCC | 1 cut(s) | 39 |
| AxyI | CCTNAGG | 1 cut(s) | 258 |
| BbvI | GCAGC | 3 cut(s) | 307, 373, 401 |
| BccI | CCATC | 4 cut(s) | 16, 65, 128, 211 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 336, 370 |
| BciT130I | CCWGG | 1 cut(s) | 164 |
| BcuI | ACTAGT | 1 cut(s) | 278 |
| BfaI | CTAG | 2 cut(s) | 36, 279 |
| BfmI | CTRYAG | 1 cut(s) | 387 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 329 |
| BisI | GCNGC | 3 cut(s) | 321, 387, 390 |
| BlpI | GCTNAGC | 1 cut(s) | 399 |
| BlsI | GCNGC | 3 cut(s) | 322, 388, 391 |
| Bme1390I | CCNGG | 1 cut(s) | 164 |
| Bme18I | GGWCC | 1 cut(s) | 39 |
| BmgT120I | GGNCC | 1 cut(s) | 39 |
| BmiI | GGNNCC | 1 cut(s) | 360 |
| BmrFI | CCNGG | 1 cut(s) | 164 |
| BmsI | GCATC | 3 cut(s) | 341, 377, 401 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 399 |
| BsaJI | CCNNGG | 1 cut(s) | 162 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 263 |
| Bse21I | CCTNAGG | 1 cut(s) | 258 |
| BseBI | CCWGG | 1 cut(s) | 164 |
| BseDI | CCNNGG | 1 cut(s) | 162 |
| BseGI | GGATG | 2 cut(s) | 151, 222 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 263 |
| BseRI | GAGGAG | 1 cut(s) | 191 |
| BseXI | GCAGC | 3 cut(s) | 307, 373, 401 |
| BshFI | GGCC | 2 cut(s) | 167, 376 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 263 |
| BsnI | GGCC | 2 cut(s) | 167, 376 |
| Bsp143I | GATC | 1 cut(s) | 413 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 399 |
| BspANI | GGCC | 2 cut(s) | 167, 376 |
| BspLI | GGNNCC | 1 cut(s) | 360 |
| BspMAI | CTGCAG | 1 cut(s) | 391 |
| BssECI | CCNNGG | 1 cut(s) | 162 |
| BssMI | GATC | 1 cut(s) | 413 |
| Bst2UI | CCWGG | 1 cut(s) | 164 |
| Bst4CI | ACNGT | 1 cut(s) | 189 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 395 |
| BstDEI | CTNAG | 3 cut(s) | 11, 258, 399 |
| BstF5I | GGATG | 2 cut(s) | 151, 222 |
| BstKTI | GATC | 1 cut(s) | 416 |
| BstMBI | GATC | 1 cut(s) | 413 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 329, 365, 395 |
| BstNI | CCWGG | 1 cut(s) | 164 |
| BstSCI | CCNGG | 1 cut(s) | 162 |
| BstSFI | CTRYAG | 1 cut(s) | 387 |
| BstV1I | GCAGC | 3 cut(s) | 307, 373, 401 |
| Bsu36I | CCTNAGG | 1 cut(s) | 258 |
| BsuRI | GGCC | 2 cut(s) | 167, 376 |
| BtsCI | GGATG | 2 cut(s) | 151, 222 |
| BtsI | GCAGTG | 2 cut(s) | 85, 145 |
| BtsIMutI | CAGTG | 2 cut(s) | 85, 145 |
| CaiI | CAGNNNCTG | 1 cut(s) | 395 |
| Cfr13I | GGNCC | 1 cut(s) | 39 |
| CviAII | CATG | 1 cut(s) | 233 |
| CviJI | RGCY | 8 cut(s) | 167, 242, 263, 274, 320, 359, 376, 386 |
| CviKI_1 | RGCY | 8 cut(s) | 167, 242, 263, 274, 320, 359, 376, 386 |
| DdeI | CTNAG | 3 cut(s) | 11, 258, 399 |
| DpnI | GATC | 1 cut(s) | 415 |
| DpnII | GATC | 1 cut(s) | 413 |
| Eco147I | AGGCCT | 1 cut(s) | 376 |
| Eco47I | GGWCC | 1 cut(s) | 39 |
| Eco81I | CCTNAGG | 1 cut(s) | 258 |
| EcoO109I | RGGNCCY | 1 cut(s) | 39 |
| EcoRII | CCWGG | 1 cut(s) | 162 |
| FaeI | CATG | 1 cut(s) | 236 |
| FaiI | YATR | 4 cut(s) | 156, 183, 192, 234 |
| FatI | CATG | 1 cut(s) | 232 |
| Fnu4HI | GCNGC | 3 cut(s) | 321, 387, 390 |
| FokI | GGATG | 2 cut(s) | 158, 229 |
| Fsp4HI | GCNGC | 3 cut(s) | 321, 387, 390 |
| FspBI | CTAG | 2 cut(s) | 36, 279 |
| GluI | GCNGC | 3 cut(s) | 321, 387, 390 |
| HaeIII | GGCC | 2 cut(s) | 167, 376 |
| Hin1II | CATG | 1 cut(s) | 236 |
| HindIII | AAGCTT | 1 cut(s) | 272 |
| HphI | GGTGA | 3 cut(s) | 31, 140, 206 |
| Hpy188I | TCNGA | 3 cut(s) | 67, 97, 418 |
| Hpy188III | TCNNGA | 1 cut(s) | 411 |
| HpyAV | CCTTC | 4 cut(s) | 50, 80, 215, 322 |
| HpyCH4III | ACNGT | 1 cut(s) | 189 |
| HpyCH4V | TGCA | 2 cut(s) | 232, 389 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 329, 365, 395 |
| HpyF3I | CTNAG | 3 cut(s) | 11, 258, 399 |
| Hsp92II | CATG | 1 cut(s) | 236 |
| Kzo9I | GATC | 1 cut(s) | 413 |
| LmnI | GCTCC | 1 cut(s) | 364 |
| LpnPI | CCDG | 4 cut(s) | 111, 149, 176, 249 |
| Lsp1109I | GCAGC | 3 cut(s) | 307, 373, 401 |
| LweI | GCATC | 3 cut(s) | 341, 377, 401 |
| MaeI | CTAG | 2 cut(s) | 36, 279 |
| MalI | GATC | 1 cut(s) | 415 |
| MboI | GATC | 1 cut(s) | 413 |
| MboII | GAAGA | 3 cut(s) | 113, 143, 248 |
| MmeI | TCCRAC | 1 cut(s) | 321 |
| MnlI | CCTC | 7 cut(s) | 76, 106, 136, 169, 193, 202, 387 |
| MspR9I | CCNGG | 1 cut(s) | 164 |
| MvaI | CCWGG | 1 cut(s) | 164 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 329, 365, 395 |
| NdeII | GATC | 1 cut(s) | 413 |
| NlaIII | CATG | 1 cut(s) | 236 |
| NlaIV | GGNNCC | 1 cut(s) | 360 |
| PceI | AGGCCT | 1 cut(s) | 376 |
| PkrI | GCNGC | 3 cut(s) | 322, 388, 391 |
| PpuMI | RGGWCCY | 1 cut(s) | 39 |
| Psp5II | RGGWCCY | 1 cut(s) | 39 |
| Psp6I | CCWGG | 1 cut(s) | 162 |
| PspGI | CCWGG | 1 cut(s) | 162 |
| PspN4I | GGNNCC | 1 cut(s) | 360 |
| PspPI | GGNCC | 1 cut(s) | 39 |
| PspPPI | RGGWCCY | 1 cut(s) | 39 |
| PstI | CTGCAG | 1 cut(s) | 391 |
| PstNI | CAGNNNCTG | 1 cut(s) | 395 |
| SatI | GCNGC | 3 cut(s) | 321, 387, 390 |
| Sau3AI | GATC | 1 cut(s) | 413 |
| Sau96I | GGNCC | 1 cut(s) | 39 |
| ScrFI | CCNGG | 1 cut(s) | 164 |
| SetI | ASST | 7 cut(s) | 44, 244, 259, 276, 341, 356, 388 |
| SfaNI | GCATC | 3 cut(s) | 341, 377, 401 |
| SfcI | CTRYAG | 1 cut(s) | 387 |
| SinI | GGWCC | 1 cut(s) | 39 |
| SpeI | ACTAGT | 1 cut(s) | 278 |
| SseBI | AGGCCT | 1 cut(s) | 376 |
| SspMI | CTAG | 2 cut(s) | 36, 279 |
| StuI | AGGCCT | 1 cut(s) | 376 |
| StyD4I | CCNGG | 1 cut(s) | 162 |
| TaaI | ACNGT | 1 cut(s) | 189 |
| TaqI | TCGA | 2 cut(s) | 29, 410 |
| TscAI | CASTG | 2 cut(s) | 85, 145 |
| TseI | GCWGC | 3 cut(s) | 320, 386, 389 |
| TspDTI | ATGAA | 4 cut(s) | 114, 198, 249, 435 |
| TspRI | CASTG | 2 cut(s) | 85, 145 |
| VpaK11BI | GGWCC | 1 cut(s) | 39 |
| XspI | CTAG | 2 cut(s) | 36, 279 |