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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1028 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 523 |
| AciI | CCGC | 1 cut(s) | 352 |
| AclWI | GGATC | 7 cut(s) | 698, 968, 996, 1161, 1585, 1790, 1803 |
| AcsI | RAATTY | 7 cut(s) | 151, 169, 203, 236, 464, 1117, 1641 |
| AcuI | CTGAAG | 3 cut(s) | 677, 872, 1861 |
| AfaI | GTAC | 1 cut(s) | 445 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 47, 523, 866, 1245, 1482 |
| AhlI | ACTAGT | 1 cut(s) | 62 |
| AjnI | CCWGG | 3 cut(s) | 1352, 1749, 1841 |
| AleI | CACNNNNGTG | 2 cut(s) | 451, 1304 |
| Alw21I | GWGCWC | 3 cut(s) | 419, 458, 793 |
| Alw26I | GTCTC | 3 cut(s) | 1258, 1414, 1490 |
| Alw44I | GTGCAC | 1 cut(s) | 454 |
| AlwI | GGATC | 7 cut(s) | 698, 968, 996, 1161, 1585, 1790, 1803 |
| Ama87I | CYCGRG | 1 cut(s) | 1259 |
| AoxI | GGCC | 2 cut(s) | 117, 755 |
| ApaLI | GTGCAC | 1 cut(s) | 454 |
| ApeKI | GCWGC | 4 cut(s) | 349, 406, 1514, 1706 |
| ApoI | RAATTY | 7 cut(s) | 151, 169, 203, 236, 464, 1117, 1641 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 551, 583 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1469 |
| AspS9I | GGNCC | 3 cut(s) | 514, 857, 1753 |
| AsuC2I | CCSGG | 2 cut(s) | 1137, 1691 |
| AsuHPI | GGTGA | 6 cut(s) | 493, 994, 1420, 1556, 1802, 1898 |
| AvaI | CYCGRG | 1 cut(s) | 1259 |
| AvaII | GGWCC | 3 cut(s) | 514, 857, 1753 |
| AxyI | CCTNAGG | 1 cut(s) | 42 |
| BaeGI | GKGCMC | 2 cut(s) | 458, 847 |
| BamHI | GGATCC | 1 cut(s) | 1795 |
| BanII | GRGCYC | 2 cut(s) | 793, 1084 |
| BbsI | GAAGAC | 4 cut(s) | 1554, 1692, 1730, 1853 |
| Bbv12I | GWGCWC | 3 cut(s) | 419, 458, 793 |
| BbvCI | CCTCAGC | 1 cut(s) | 1557 |
| BbvI | GCAGC | 4 cut(s) | 336, 418, 1501, 1718 |
| BccI | CCATC | 7 cut(s) | 170, 306, 434, 806, 833, 925, 1887 |
| BciT130I | CCWGG | 3 cut(s) | 1354, 1751, 1843 |
| BclI | TGATCA | 1 cut(s) | 426 |
| BcnI | CCSGG | 2 cut(s) | 1137, 1691 |
| BcoDI | GTCTC | 3 cut(s) | 1258, 1414, 1490 |
| BcuI | ACTAGT | 1 cut(s) | 62 |
| BfaI | CTAG | 4 cut(s) | 63, 836, 1226, 1368 |
| BfmI | CTRYAG | 2 cut(s) | 885, 1741 |
| BisI | GCNGC | 4 cut(s) | 350, 407, 1515, 1707 |
| BlsI | GCNGC | 4 cut(s) | 351, 408, 1516, 1708 |
| Bme1390I | CCNGG | 5 cut(s) | 1137, 1354, 1691, 1751, 1843 |
| Bme18I | GGWCC | 3 cut(s) | 514, 857, 1753 |
| BmeT110I | CYCGRG | 1 cut(s) | 1259 |
| BmgT120I | GGNCC | 3 cut(s) | 514, 857, 1753 |
| BmiI | GGNNCC | 2 cut(s) | 858, 1797 |
| BmrFI | CCNGG | 5 cut(s) | 1137, 1354, 1691, 1751, 1843 |
| BmsI | GCATC | 6 cut(s) | 271, 806, 886, 943, 1225, 1354 |
| BpiI | GAAGAC | 4 cut(s) | 1554, 1692, 1730, 1853 |
| BpmI | CTGGAG | 1 cut(s) | 992 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1557 |
| BpuEI | CTTGAG | 1 cut(s) | 1703 |
| BpuMI | CCSGG | 2 cut(s) | 1137, 1691 |
| BsaI | GGTCTC | 1 cut(s) | 1258 |
| BsaJI | CCNNGG | 4 cut(s) | 948, 1076, 1459, 1481 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 47, 523, 866, 1245, 1482 |
| Bse1I | ACTGG | 2 cut(s) | 204, 758 |
| Bse21I | CCTNAGG | 1 cut(s) | 42 |
| Bse3DI | GCAATG | 2 cut(s) | 1551, 1608 |
| BseBI | CCWGG | 3 cut(s) | 1354, 1751, 1843 |
| BseDI | CCNNGG | 4 cut(s) | 948, 1076, 1459, 1481 |
| BseGI | GGATG | 7 cut(s) | 317, 777, 817, 821, 958, 1254, 1699 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 47, 523, 866, 1245, 1482 |
| BseMI | GCAATG | 2 cut(s) | 1551, 1608 |
| BseMII | CTCAG | 2 cut(s) | 90, 1548 |
| BseNI | ACTGG | 2 cut(s) | 204, 758 |
| BseSI | GKGCMC | 2 cut(s) | 458, 847 |
| BseXI | GCAGC | 4 cut(s) | 336, 418, 1501, 1718 |
| BshFI | GGCC | 2 cut(s) | 119, 757 |
| BsiHKAI | GWGCWC | 3 cut(s) | 419, 458, 793 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1259 |
| BsiSI | CCGG | 2 cut(s) | 1136, 1691 |
| BslFI | GGGAC | 3 cut(s) | 363, 870, 1058 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 47, 523, 866, 1245, 1482 |
| BsmAI | GTCTC | 3 cut(s) | 1258, 1414, 1490 |
| BsmFI | GGGAC | 3 cut(s) | 363, 870, 1058 |
| BsmI | GAATGC | 1 cut(s) | 648 |
| BsnI | GGCC | 2 cut(s) | 119, 757 |
| Bso31I | GGTCTC | 1 cut(s) | 1258 |
| BsoBI | CYCGRG | 1 cut(s) | 1259 |
| Bsp1286I | GDGCHC | 5 cut(s) | 419, 458, 793, 847, 1084 |
| Bsp143I | GATC | 7 cut(s) | 426, 703, 960, 988, 1153, 1577, 1795 |
| Bsp19I | CCATGG | 1 cut(s) | 1459 |
| BspACI | CCGC | 1 cut(s) | 352 |
| BspANI | GGCC | 2 cut(s) | 119, 757 |
| BspCNI | CTCAG | 2 cut(s) | 91, 1549 |
| BspHI | TCATGA | 3 cut(s) | 423, 1146, 1320 |
| BspLI | GGNNCC | 2 cut(s) | 858, 1797 |
| BspPI | GGATC | 7 cut(s) | 698, 968, 996, 1161, 1585, 1790, 1803 |
| BspTNI | GGTCTC | 1 cut(s) | 1258 |
| BsrDI | GCAATG | 2 cut(s) | 1551, 1608 |
| BsrI | ACTGG | 2 cut(s) | 204, 758 |
| BssECI | CCNNGG | 4 cut(s) | 948, 1076, 1459, 1481 |
| BssMI | GATC | 7 cut(s) | 426, 703, 960, 988, 1153, 1577, 1795 |
| BssT1I | CCWWGG | 4 cut(s) | 948, 1076, 1459, 1481 |
| Bst2UI | CCWGG | 3 cut(s) | 1354, 1751, 1843 |
| Bst4CI | ACNGT | 3 cut(s) | 265, 876, 1313 |
| Bst6I | CTCTTC | 2 cut(s) | 1059, 1673 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 896 |
| BstC8I | GCNNGC | 6 cut(s) | 297, 624, 1652, 1656, 1711, 1873 |
| BstDEI | CTNAG | 4 cut(s) | 42, 99, 488, 1557 |
| BstDSI | CCRYGG | 1 cut(s) | 1459 |
| BstF5I | GGATG | 7 cut(s) | 317, 777, 817, 821, 958, 1254, 1699 |
| BstKTI | GATC | 7 cut(s) | 429, 706, 963, 991, 1156, 1580, 1798 |
| BstMAI | GTCTC | 3 cut(s) | 1258, 1414, 1490 |
| BstMBI | GATC | 7 cut(s) | 426, 703, 960, 988, 1153, 1577, 1795 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 611, 896, 1664 |
| BstNI | CCWGG | 3 cut(s) | 1354, 1751, 1843 |
| BstNSI | RCATGY | 4 cut(s) | 299, 1614, 1658, 1875 |
| BstSCI | CCNGG | 5 cut(s) | 1135, 1352, 1689, 1749, 1841 |
| BstSFI | CTRYAG | 2 cut(s) | 885, 1741 |
| BstSLI | GKGCMC | 2 cut(s) | 458, 847 |
| BstV1I | GCAGC | 4 cut(s) | 336, 418, 1501, 1718 |
| BstV2I | GAAGAC | 4 cut(s) | 1554, 1692, 1730, 1853 |
| BstX2I | RGATCY | 3 cut(s) | 960, 988, 1795 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 601 |
| BstYI | RGATCY | 3 cut(s) | 960, 988, 1795 |
| Bsu36I | CCTNAGG | 1 cut(s) | 42 |
| BsuRI | GGCC | 2 cut(s) | 119, 757 |
| BtgI | CCRYGG | 1 cut(s) | 1459 |
| BtgZI | GCGATG | 1 cut(s) | 944 |
| BtsCI | GGATG | 7 cut(s) | 317, 777, 817, 821, 958, 1254, 1699 |
| BtsI | GCAGTG | 1 cut(s) | 1437 |
| BtsIMutI | CAGTG | 1 cut(s) | 1437 |
| Cac8I | GCNNGC | 6 cut(s) | 297, 624, 1652, 1656, 1711, 1873 |
| CciI | TCATGA | 3 cut(s) | 423, 1146, 1320 |
| Cfr13I | GGNCC | 3 cut(s) | 514, 857, 1753 |
| CsiI | ACCWGGT | 1 cut(s) | 1749 |
| Csp6I | GTAC | 1 cut(s) | 444 |
| CviQI | GTAC | 1 cut(s) | 444 |
| DdeI | CTNAG | 4 cut(s) | 42, 99, 488, 1557 |
| DpnI | GATC | 7 cut(s) | 428, 705, 962, 990, 1155, 1579, 1797 |
| DpnII | GATC | 7 cut(s) | 426, 703, 960, 988, 1153, 1577, 1795 |
| DraI | TTTAAA | 3 cut(s) | 241, 766, 1396 |
| Eam1104I | CTCTTC | 2 cut(s) | 1059, 1673 |
| EarI | CTCTTC | 2 cut(s) | 1059, 1673 |
| Ecl136II | GAGCTC | 1 cut(s) | 791 |
| Eco130I | CCWWGG | 4 cut(s) | 948, 1076, 1459, 1481 |
| Eco24I | GRGCYC | 2 cut(s) | 793, 1084 |
| Eco31I | GGTCTC | 1 cut(s) | 1258 |
| Eco47I | GGWCC | 3 cut(s) | 514, 857, 1753 |
| Eco53kI | GAGCTC | 1 cut(s) | 791 |
| Eco57I | CTGAAG | 3 cut(s) | 677, 872, 1861 |
| Eco81I | CCTNAGG | 1 cut(s) | 42 |
| Eco88I | CYCGRG | 1 cut(s) | 1259 |
| EcoICRI | GAGCTC | 1 cut(s) | 791 |
| EcoO109I | RGGNCCY | 1 cut(s) | 857 |
| EcoRI | GAATTC | 1 cut(s) | 203 |
| EcoRII | CCWGG | 3 cut(s) | 1352, 1749, 1841 |
| EcoT14I | CCWWGG | 4 cut(s) | 948, 1076, 1459, 1481 |
| EcoT22I | ATGCAT | 2 cut(s) | 286, 958 |
| EcoT38I | GRGCYC | 2 cut(s) | 793, 1084 |
| ErhI | CCWWGG | 4 cut(s) | 948, 1076, 1459, 1481 |
| FaqI | GGGAC | 3 cut(s) | 363, 870, 1058 |
| FauI | CCCGC | 1 cut(s) | 345 |
| FauNDI | CATATG | 2 cut(s) | 925, 1107 |
| FbaI | TGATCA | 1 cut(s) | 426 |
| Fnu4HI | GCNGC | 4 cut(s) | 350, 407, 1515, 1707 |
| FokI | GGATG | 7 cut(s) | 324, 784, 824, 828, 965, 1261, 1706 |
| FriOI | GRGCYC | 2 cut(s) | 793, 1084 |
| Fsp4HI | GCNGC | 4 cut(s) | 350, 407, 1515, 1707 |
| FspBI | CTAG | 4 cut(s) | 63, 836, 1226, 1368 |
| GluI | GCNGC | 4 cut(s) | 350, 407, 1515, 1707 |
| GsuI | CTGGAG | 1 cut(s) | 992 |
| HaeIII | GGCC | 2 cut(s) | 119, 757 |
| HapII | CCGG | 2 cut(s) | 1136, 1691 |
| HincII | GTYRAC | 1 cut(s) | 1564 |
| HindII | GTYRAC | 1 cut(s) | 1564 |
| HindIII | AAGCTT | 2 cut(s) | 56, 485 |
| HinfI | GANTC | 3 cut(s) | 137, 548, 1864 |
| HpaII | CCGG | 2 cut(s) | 1136, 1691 |
| HphI | GGTGA | 6 cut(s) | 493, 994, 1420, 1556, 1802, 1898 |
| Hpy166II | GTNNAC | 6 cut(s) | 446, 456, 1113, 1309, 1564, 1594 |
| Hpy188I | TCNGA | 5 cut(s) | 142, 175, 696, 1200, 1880 |
| Hpy188III | TCNNGA | 9 cut(s) | 134, 331, 424, 653, 971, 992, 1147, 1321, 1720 |
| Hpy8I | GTNNAC | 6 cut(s) | 446, 456, 1113, 1309, 1564, 1594 |
| HpyCH4III | ACNGT | 3 cut(s) | 265, 876, 1313 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 611, 896, 1664 |
| HpyF3I | CTNAG | 4 cut(s) | 42, 99, 488, 1557 |
| Ksp22I | TGATCA | 1 cut(s) | 426 |
| Kzo9I | GATC | 7 cut(s) | 426, 703, 960, 988, 1153, 1577, 1795 |
| LmnI | GCTCC | 5 cut(s) | 181, 292, 688, 788, 937 |
| Lsp1109I | GCAGC | 4 cut(s) | 336, 418, 1501, 1718 |
| LweI | GCATC | 6 cut(s) | 271, 806, 886, 943, 1225, 1354 |
| MabI | ACCWGGT | 1 cut(s) | 1749 |
| MaeI | CTAG | 4 cut(s) | 63, 836, 1226, 1368 |
| MaeIII | GTNAC | 4 cut(s) | 94, 1313, 1384, 1886 |
| MalI | GATC | 7 cut(s) | 428, 705, 962, 990, 1155, 1579, 1797 |
| MboI | GATC | 7 cut(s) | 426, 703, 960, 988, 1153, 1577, 1795 |
| MfeI | CAATTG | 1 cut(s) | 891 |
| MflI | RGATCY | 3 cut(s) | 960, 988, 1795 |
| MhlI | GDGCHC | 5 cut(s) | 419, 458, 793, 847, 1084 |
| MmeI | TCCRAC | 3 cut(s) | 243, 612, 618 |
| Mph1103I | ATGCAT | 2 cut(s) | 286, 958 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1469 |
| MslI | CAYNNNNRTG | 4 cut(s) | 422, 451, 1304, 1673 |
| MspI | CCGG | 2 cut(s) | 1136, 1691 |
| MspR9I | CCNGG | 5 cut(s) | 1137, 1354, 1691, 1751, 1843 |
| MunI | CAATTG | 1 cut(s) | 891 |
| Mva1269I | GAATGC | 1 cut(s) | 648 |
| MvaI | CCWGG | 3 cut(s) | 1354, 1751, 1843 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 611, 896, 1664 |
| NciI | CCSGG | 2 cut(s) | 1137, 1691 |
| NcoI | CCATGG | 1 cut(s) | 1459 |
| NdeI | CATATG | 2 cut(s) | 925, 1107 |
| NdeII | GATC | 7 cut(s) | 426, 703, 960, 988, 1153, 1577, 1795 |
| NlaIV | GGNNCC | 2 cut(s) | 858, 1797 |
| NmuCI | GTSAC | 4 cut(s) | 94, 1313, 1384, 1886 |
| NsiI | ATGCAT | 2 cut(s) | 286, 958 |
| NspI | RCATGY | 4 cut(s) | 299, 1614, 1658, 1875 |
| OliI | CACNNNNGTG | 2 cut(s) | 451, 1304 |
| PaeI | GCATGC | 3 cut(s) | 299, 1658, 1875 |
| PagI | TCATGA | 3 cut(s) | 423, 1146, 1320 |
| PctI | GAATGC | 1 cut(s) | 648 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1469 |
| PfeI | GAWTC | 3 cut(s) | 137, 548, 1864 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 523 |
| PfoI | TCCNGGA | 1 cut(s) | 1135 |
| PkrI | GCNGC | 4 cut(s) | 351, 408, 1516, 1708 |
| PpuMI | RGGWCCY | 1 cut(s) | 857 |
| PsiI | TTATAA | 1 cut(s) | 1028 |
| Psp124BI | GAGCTC | 1 cut(s) | 793 |
| Psp5II | RGGWCCY | 1 cut(s) | 857 |
| Psp6I | CCWGG | 3 cut(s) | 1352, 1749, 1841 |
| PspGI | CCWGG | 3 cut(s) | 1352, 1749, 1841 |
| PspN4I | GGNNCC | 2 cut(s) | 858, 1797 |
| PspPI | GGNCC | 3 cut(s) | 514, 857, 1753 |
| PspPPI | RGGWCCY | 1 cut(s) | 857 |
| PsuI | RGATCY | 3 cut(s) | 960, 988, 1795 |
| RsaI | GTAC | 1 cut(s) | 445 |
| RsaNI | GTAC | 1 cut(s) | 444 |
| RseI | CAYNNNNRTG | 4 cut(s) | 422, 451, 1304, 1673 |
| SacI | GAGCTC | 1 cut(s) | 793 |
| SatI | GCNGC | 4 cut(s) | 350, 407, 1515, 1707 |
| Sau3AI | GATC | 7 cut(s) | 426, 703, 960, 988, 1153, 1577, 1795 |
| Sau96I | GGNCC | 3 cut(s) | 514, 857, 1753 |
| ScrFI | CCNGG | 5 cut(s) | 1137, 1354, 1691, 1751, 1843 |
| SduI | GDGCHC | 5 cut(s) | 419, 458, 793, 847, 1084 |
| SexAI | ACCWGGT | 1 cut(s) | 1749 |
| SfaNI | GCATC | 6 cut(s) | 271, 806, 886, 943, 1225, 1354 |
| SfcI | CTRYAG | 2 cut(s) | 885, 1741 |
| SinI | GGWCC | 3 cut(s) | 514, 857, 1753 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 422, 451, 1304, 1673 |
| SmlI | CTYRAG | 1 cut(s) | 1718 |
| SmoI | CTYRAG | 1 cut(s) | 1718 |
| SpeI | ACTAGT | 1 cut(s) | 62 |
| SphI | GCATGC | 3 cut(s) | 299, 1658, 1875 |
| SsiI | CCGC | 1 cut(s) | 352 |
| SspI | AATATT | 1 cut(s) | 1570 |
| SspMI | CTAG | 4 cut(s) | 63, 836, 1226, 1368 |
| SstI | GAGCTC | 1 cut(s) | 793 |
| StyD4I | CCNGG | 5 cut(s) | 1135, 1352, 1689, 1749, 1841 |
| StyI | CCWWGG | 4 cut(s) | 948, 1076, 1459, 1481 |
| TaaI | ACNGT | 3 cut(s) | 265, 876, 1313 |
| TaqI | TCGA | 1 cut(s) | 580 |
| TfiI | GAWTC | 3 cut(s) | 137, 548, 1864 |
| TscAI | CASTG | 1 cut(s) | 1437 |
| TseFI | GTSAC | 4 cut(s) | 94, 1313, 1384, 1886 |
| TseI | GCWGC | 4 cut(s) | 349, 406, 1514, 1706 |
| Tsp45I | GTSAC | 4 cut(s) | 94, 1313, 1384, 1886 |
| TspDTI | ATGAA | 8 cut(s) | 33, 207, 239, 1020, 1163, 1223, 1232, 1691 |
| TspGWI | ACGGA | 1 cut(s) | 784 |
| TspRI | CASTG | 1 cut(s) | 1437 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 523 |
| VneI | GTGCAC | 1 cut(s) | 454 |
| VpaK11BI | GGWCC | 3 cut(s) | 514, 857, 1753 |
| XapI | RAATTY | 7 cut(s) | 151, 169, 203, 236, 464, 1117, 1641 |
| XceI | RCATGY | 4 cut(s) | 299, 1614, 1658, 1875 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1275 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1469 |
| XspI | CTAG | 4 cut(s) | 63, 836, 1226, 1368 |
| Zsp2I | ATGCAT | 2 cut(s) | 286, 958 |