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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1028 |
| Acc36I | ACCTGC | 2 cut(s) | 169, 803 |
| AccI | GTMKAC | 1 cut(s) | 569 |
| AciI | CCGC | 2 cut(s) | 697, 1515 |
| AclWI | GGATC | 4 cut(s) | 76, 899, 1782, 1891 |
| AcoI | YGGCCR | 1 cut(s) | 672 |
| AcsI | RAATTY | 4 cut(s) | 194, 203, 506, 1641 |
| AcuI | CTGAAG | 4 cut(s) | 60, 207, 1578, 1851 |
| AfaI | GTAC | 4 cut(s) | 326, 776, 1891, 1908 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1681, 1766 |
| AflII | CTTAAG | 1 cut(s) | 794 |
| AflIII | ACRYGT | 2 cut(s) | 120, 321 |
| AgsI | TTSAA | 9 cut(s) | 305, 511, 766, 808, 1228, 1397, 1496, 1510, 1540 |
| AjiI | CACGTC | 1 cut(s) | 1069 |
| AleI | CACNNNNGTG | 2 cut(s) | 1309, 1921 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 532, 564 |
| Alw21I | GWGCWC | 3 cut(s) | 450, 458, 847 |
| Alw26I | GTCTC | 4 cut(s) | 938, 1096, 1356, 1666 |
| Alw44I | GTGCAC | 1 cut(s) | 454 |
| AlwI | GGATC | 4 cut(s) | 76, 899, 1782, 1891 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1095 |
| AoxI | GGCC | 6 cut(s) | 603, 672, 789, 1265, 1512, 1834 |
| ApaI | GGGCCC | 1 cut(s) | 793 |
| ApaLI | GTGCAC | 1 cut(s) | 454 |
| ApeKI | GCWGC | 4 cut(s) | 281, 691, 694, 750 |
| ApoI | RAATTY | 4 cut(s) | 194, 203, 506, 1641 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 365, 397, 937, 969, 1644, 1676 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 803 |
| AspA2I | CCTAGG | 1 cut(s) | 1942 |
| AsuC2I | CCSGG | 4 cut(s) | 1015, 1137, 1691, 1833 |
| AsuHPI | GGTGA | 2 cut(s) | 1541, 1802 |
| AvaII | GGWCC | 7 cut(s) | 158, 1072, 1153, 1594, 1687, 1796, 1939 |
| AvrII | CCTAGG | 1 cut(s) | 1942 |
| BaeGI | GKGCMC | 2 cut(s) | 458, 793 |
| BanII | GRGCYC | 2 cut(s) | 647, 793 |
| BbsI | GAAGAC | 4 cut(s) | 114, 123, 1730, 1964 |
| Bbv12I | GWGCWC | 3 cut(s) | 450, 458, 847 |
| BbvI | GCAGC | 4 cut(s) | 268, 678, 706, 762 |
| BccI | CCATC | 7 cut(s) | 17, 38, 170, 833, 998, 1347, 1974 |
| BceAI | ACGGC | 2 cut(s) | 149, 869 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 374, 408 |
| BclI | TGATCA | 1 cut(s) | 426 |
| BcnI | CCSGG | 4 cut(s) | 1015, 1137, 1691, 1833 |
| BcoDI | GTCTC | 4 cut(s) | 938, 1096, 1356, 1666 |
| BfaI | CTAG | 4 cut(s) | 489, 1368, 1898, 1943 |
| BfmI | CTRYAG | 3 cut(s) | 692, 971, 1518 |
| BfrI | CTTAAG | 1 cut(s) | 794 |
| BfuAI | ACCTGC | 2 cut(s) | 169, 803 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 611 |
| BisI | GCNGC | 5 cut(s) | 282, 692, 695, 751, 1515 |
| BlnI | CCTAGG | 1 cut(s) | 1942 |
| BlsI | GCNGC | 5 cut(s) | 283, 693, 696, 752, 1516 |
| Bme1390I | CCNGG | 4 cut(s) | 1015, 1137, 1691, 1833 |
| Bme18I | GGWCC | 7 cut(s) | 158, 1072, 1153, 1594, 1687, 1796, 1939 |
| BmgBI | CACGTC | 1 cut(s) | 1069 |
| BmiI | GGNNCC | 9 cut(s) | 159, 183, 790, 791, 1012, 1074, 1268, 1689, 1940 |
| BmrFI | CCNGG | 4 cut(s) | 1015, 1137, 1691, 1833 |
| BmsI | GCATC | 5 cut(s) | 79, 404, 886, 1041, 1981 |
| BpiI | GAAGAC | 4 cut(s) | 114, 123, 1730, 1964 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 858, 890 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1078, 1878 |
| BpuEI | CTTGAG | 2 cut(s) | 730, 1703 |
| BpuMI | CCSGG | 4 cut(s) | 1015, 1137, 1691, 1833 |
| Bsa29I | ATCGAT | 1 cut(s) | 894 |
| BsaAI | YACGTR | 1 cut(s) | 322 |
| BsaBI | GATNNNNATC | 1 cut(s) | 722 |
| BsaJI | CCNNGG | 3 cut(s) | 1136, 1459, 1942 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1681, 1766 |
| Bse1I | ACTGG | 1 cut(s) | 542 |
| Bse3DI | GCAATG | 2 cut(s) | 936, 1809 |
| Bse8I | GATNNNNATC | 1 cut(s) | 722 |
| BseCI | ATCGAT | 1 cut(s) | 894 |
| BseDI | CCNNGG | 3 cut(s) | 1136, 1459, 1942 |
| BseGI | GGATG | 6 cut(s) | 148, 255, 376, 1254, 1358, 1699 |
| BseJI | GATNNNNATC | 1 cut(s) | 722 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1681, 1766 |
| BseMI | GCAATG | 2 cut(s) | 936, 1809 |
| BseMII | CTCAG | 2 cut(s) | 225, 2060 |
| BseNI | ACTGG | 1 cut(s) | 542 |
| BseSI | GKGCMC | 2 cut(s) | 458, 793 |
| BseXI | GCAGC | 4 cut(s) | 268, 678, 706, 762 |
| BseYI | CCCAGC | 2 cut(s) | 312, 706 |
| BsgI | GTGCAG | 2 cut(s) | 1287, 1303 |
| BshFI | GGCC | 6 cut(s) | 605, 674, 791, 1267, 1514, 1836 |
| BshVI | ATCGAT | 1 cut(s) | 894 |
| BsiHKAI | GWGCWC | 3 cut(s) | 450, 458, 847 |
| BsiSI | CCGG | 4 cut(s) | 1014, 1136, 1691, 1832 |
| BslFI | GGGAC | 3 cut(s) | 171, 1058, 1643 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1681, 1766 |
| BsmAI | GTCTC | 4 cut(s) | 938, 1096, 1356, 1666 |
| BsmBI | CGTCTC | 1 cut(s) | 1356 |
| BsmFI | GGGAC | 3 cut(s) | 171, 1058, 1643 |
| BsmI | GAATGC | 1 cut(s) | 1715 |
| BsnI | GGCC | 6 cut(s) | 605, 674, 791, 1267, 1514, 1836 |
| Bsp120I | GGGCCC | 1 cut(s) | 789 |
| Bsp1286I | GDGCHC | 5 cut(s) | 450, 458, 647, 793, 847 |
| Bsp1407I | TGTACA | 1 cut(s) | 774 |
| Bsp143I | GATC | 6 cut(s) | 68, 426, 576, 891, 1774, 1883 |
| Bsp19I | CCATGG | 1 cut(s) | 1459 |
| BspACI | CCGC | 2 cut(s) | 697, 1515 |
| BspANI | GGCC | 6 cut(s) | 605, 674, 791, 1267, 1514, 1836 |
| BspCNI | CTCAG | 2 cut(s) | 226, 2059 |
| BspDI | ATCGAT | 1 cut(s) | 894 |
| BspHI | TCATGA | 1 cut(s) | 423 |
| BspLI | GGNNCC | 9 cut(s) | 159, 183, 790, 791, 1012, 1074, 1268, 1689, 1940 |
| BspMAI | CTGCAG | 2 cut(s) | 696, 975 |
| BspMI | ACCTGC | 2 cut(s) | 169, 803 |
| BspPI | GGATC | 4 cut(s) | 76, 899, 1782, 1891 |
| BspTI | CTTAAG | 1 cut(s) | 794 |
| BsrDI | GCAATG | 2 cut(s) | 936, 1809 |
| BsrGI | TGTACA | 1 cut(s) | 774 |
| BsrI | ACTGG | 1 cut(s) | 542 |
| BssECI | CCNNGG | 3 cut(s) | 1136, 1459, 1942 |
| BssMI | GATC | 6 cut(s) | 68, 426, 576, 891, 1774, 1883 |
| BssT1I | CCWWGG | 2 cut(s) | 1459, 1942 |
| Bst4CI | ACNGT | 4 cut(s) | 1224, 1526, 1591, 1849 |
| Bst6I | CTCTTC | 4 cut(s) | 141, 1673, 1870, 1897 |
| BstAFI | CTTAAG | 1 cut(s) | 794 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1470 |
| BstAUI | TGTACA | 1 cut(s) | 774 |
| BstBAI | YACGTR | 1 cut(s) | 322 |
| BstC8I | GCNNGC | 4 cut(s) | 672, 755, 1056, 1452 |
| BstDEI | CTNAG | 7 cut(s) | 234, 1078, 1433, 1581, 1604, 1878, 2046 |
| BstDSI | CCRYGG | 1 cut(s) | 1459 |
| BstEII | GGTNACC | 1 cut(s) | 1547 |
| BstF5I | GGATG | 6 cut(s) | 148, 255, 376, 1254, 1358, 1699 |
| BstKTI | GATC | 6 cut(s) | 71, 429, 579, 894, 1777, 1886 |
| BstMAI | GTCTC | 4 cut(s) | 938, 1096, 1356, 1666 |
| BstMBI | GATC | 6 cut(s) | 68, 426, 576, 891, 1774, 1883 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 611, 671, 1470, 1664 |
| BstNSI | RCATGY | 4 cut(s) | 124, 1614, 1658, 1965 |
| BstPI | GGTNACC | 1 cut(s) | 1547 |
| BstSCI | CCNGG | 4 cut(s) | 1013, 1135, 1689, 1831 |
| BstSFI | CTRYAG | 3 cut(s) | 692, 971, 1518 |
| BstSLI | GKGCMC | 2 cut(s) | 458, 793 |
| BstV1I | GCAGC | 4 cut(s) | 268, 678, 706, 762 |
| BstV2I | GAAGAC | 4 cut(s) | 114, 123, 1730, 1964 |
| BstX2I | RGATCY | 3 cut(s) | 68, 1774, 1883 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1278 |
| BstYI | RGATCY | 3 cut(s) | 68, 1774, 1883 |
| Bsu15I | ATCGAT | 1 cut(s) | 894 |
| BsuRI | GGCC | 6 cut(s) | 605, 674, 791, 1267, 1514, 1836 |
| BsuTUI | ATCGAT | 1 cut(s) | 894 |
| BtgI | CCRYGG | 1 cut(s) | 1459 |
| BtrI | CACGTC | 1 cut(s) | 1069 |
| BtsCI | GGATG | 6 cut(s) | 148, 255, 376, 1254, 1358, 1699 |
| BtsI | GCAGTG | 2 cut(s) | 1299, 1316 |
| BtsIMutI | CAGTG | 2 cut(s) | 1299, 1316 |
| BveI | ACCTGC | 2 cut(s) | 169, 803 |
| Cac8I | GCNNGC | 4 cut(s) | 672, 755, 1056, 1452 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1095 |
| CciI | TCATGA | 1 cut(s) | 423 |
| ClaI | ATCGAT | 1 cut(s) | 894 |
| CseI | GACGC | 1 cut(s) | 1373 |
| Csp6I | GTAC | 4 cut(s) | 325, 775, 1890, 1907 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 988, 1023 |
| CviQI | GTAC | 4 cut(s) | 325, 775, 1890, 1907 |
| DdeI | CTNAG | 7 cut(s) | 234, 1078, 1433, 1581, 1604, 1878, 2046 |
| DpnI | GATC | 6 cut(s) | 70, 428, 578, 893, 1776, 1885 |
| DpnII | GATC | 6 cut(s) | 68, 426, 576, 891, 1774, 1883 |
| DraI | TTTAAA | 1 cut(s) | 1200 |
| EaeI | YGGCCR | 1 cut(s) | 672 |
| Eam1104I | CTCTTC | 4 cut(s) | 141, 1673, 1870, 1897 |
| EarI | CTCTTC | 4 cut(s) | 141, 1673, 1870, 1897 |
| Eco130I | CCWWGG | 2 cut(s) | 1459, 1942 |
| Eco24I | GRGCYC | 2 cut(s) | 647, 793 |
| Eco32I | GATATC | 2 cut(s) | 724, 997 |
| Eco47I | GGWCC | 7 cut(s) | 158, 1072, 1153, 1594, 1687, 1796, 1939 |
| Eco57I | CTGAAG | 4 cut(s) | 60, 207, 1578, 1851 |
| Eco91I | GGTNACC | 1 cut(s) | 1547 |
| EcoO109I | RGGNCCY | 6 cut(s) | 158, 789, 790, 1266, 1687, 1939 |
| EcoO65I | GGTNACC | 1 cut(s) | 1547 |
| EcoRI | GAATTC | 2 cut(s) | 194, 1641 |
| EcoRV | GATATC | 2 cut(s) | 724, 997 |
| EcoT14I | CCWWGG | 2 cut(s) | 1459, 1942 |
| EcoT22I | ATGCAT | 2 cut(s) | 94, 397 |
| EcoT38I | GRGCYC | 2 cut(s) | 647, 793 |
| ErhI | CCWWGG | 2 cut(s) | 1459, 1942 |
| Esp3I | CGTCTC | 1 cut(s) | 1356 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 610, 642 |
| FaqI | GGGAC | 3 cut(s) | 171, 1058, 1643 |
| FauI | CCCGC | 1 cut(s) | 690 |
| FauNDI | CATATG | 6 cut(s) | 94, 436, 779, 925, 1107, 1240 |
| FbaI | TGATCA | 1 cut(s) | 426 |
| FblI | GTMKAC | 1 cut(s) | 569 |
| Fnu4HI | GCNGC | 5 cut(s) | 282, 692, 695, 751, 1515 |
| FokI | GGATG | 6 cut(s) | 155, 262, 383, 1261, 1365, 1706 |
| FriOI | GRGCYC | 2 cut(s) | 647, 793 |
| Fsp4HI | GCNGC | 5 cut(s) | 282, 692, 695, 751, 1515 |
| FspBI | CTAG | 4 cut(s) | 489, 1368, 1898, 1943 |
| GluI | GCNGC | 5 cut(s) | 282, 692, 695, 751, 1515 |
| GsaI | CCCAGC | 2 cut(s) | 316, 710 |
| HaeIII | GGCC | 6 cut(s) | 605, 674, 791, 1267, 1514, 1836 |
| HapII | CCGG | 4 cut(s) | 1014, 1136, 1691, 1832 |
| HgaI | GACGC | 1 cut(s) | 1373 |
| HincII | GTYRAC | 1 cut(s) | 703 |
| HindII | GTYRAC | 1 cut(s) | 703 |
| HindIII | AAGCTT | 1 cut(s) | 1452 |
| HinfI | GANTC | 8 cut(s) | 137, 520, 804, 953, 1092, 1426, 1600, 1862 |
| HpaII | CCGG | 4 cut(s) | 1014, 1136, 1691, 1832 |
| HphI | GGTGA | 2 cut(s) | 1541, 1802 |
| Hpy166II | GTNNAC | 8 cut(s) | 169, 325, 456, 570, 703, 1020, 1113, 1594 |
| Hpy188I | TCNGA | 7 cut(s) | 142, 175, 1091, 1406, 1870, 2041, 2049 |
| Hpy188III | TCNNGA | 8 cut(s) | 424, 430, 489, 766, 877, 1638, 1675, 1720 |
| Hpy8I | GTNNAC | 8 cut(s) | 169, 325, 456, 570, 703, 1020, 1113, 1594 |
| HpyAV | CCTTC | 9 cut(s) | 391, 1036, 1144, 1228, 1431, 1504, 1546, 1617, 1787 |
| HpyCH4III | ACNGT | 4 cut(s) | 1224, 1526, 1591, 1849 |
| HpyCH4IV | ACGT | 3 cut(s) | 321, 1068, 1701 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 611, 671, 1470, 1664 |
| HpyF3I | CTNAG | 7 cut(s) | 234, 1078, 1433, 1581, 1604, 1878, 2046 |
| HpySE526I | ACGT | 3 cut(s) | 321, 1068, 1701 |
| Ksp22I | TGATCA | 1 cut(s) | 426 |
| Kzo9I | GATC | 6 cut(s) | 68, 426, 576, 891, 1774, 1883 |
| LmnI | GCTCC | 3 cut(s) | 17, 181, 1010 |
| Lsp1109I | GCAGC | 4 cut(s) | 268, 678, 706, 762 |
| LweI | GCATC | 5 cut(s) | 79, 404, 886, 1041, 1981 |
| MaeI | CTAG | 4 cut(s) | 489, 1368, 1898, 1943 |
| MaeII | ACGT | 3 cut(s) | 321, 1068, 1701 |
| MaeIII | GTNAC | 5 cut(s) | 1031, 1313, 1547, 1806, 1946 |
| MalI | GATC | 6 cut(s) | 70, 428, 578, 893, 1776, 1885 |
| MboI | GATC | 6 cut(s) | 68, 426, 576, 891, 1774, 1883 |
| MfeI | CAATTG | 1 cut(s) | 1930 |
| MflI | RGATCY | 3 cut(s) | 68, 1774, 1883 |
| MhlI | GDGCHC | 5 cut(s) | 450, 458, 647, 793, 847 |
| MluCI | AATT | 9 cut(s) | 194, 203, 300, 506, 635, 659, 1641, 1930, 2062 |
| MlyI | GAGTC | 1 cut(s) | 1856 |
| Mph1103I | ATGCAT | 2 cut(s) | 94, 397 |
| MroXI | GAANNNNTTC | 1 cut(s) | 803 |
| MslI | CAYNNNNRTG | 4 cut(s) | 221, 422, 1309, 1921 |
| MspA1I | CMGCKG | 1 cut(s) | 697 |
| MspCI | CTTAAG | 1 cut(s) | 794 |
| MspI | CCGG | 4 cut(s) | 1014, 1136, 1691, 1832 |
| MspR9I | CCNGG | 4 cut(s) | 1015, 1137, 1691, 1833 |
| MunI | CAATTG | 1 cut(s) | 1930 |
| Mva1269I | GAATGC | 1 cut(s) | 1715 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 611, 671, 1470, 1664 |
| NciI | CCSGG | 4 cut(s) | 1015, 1137, 1691, 1833 |
| NcoI | CCATGG | 1 cut(s) | 1459 |
| NdeI | CATATG | 6 cut(s) | 94, 436, 779, 925, 1107, 1240 |
| NdeII | GATC | 6 cut(s) | 68, 426, 576, 891, 1774, 1883 |
| NlaIV | GGNNCC | 9 cut(s) | 159, 183, 790, 791, 1012, 1074, 1268, 1689, 1940 |
| NmeAIII | GCCGAG | 1 cut(s) | 1643 |
| NmuCI | GTSAC | 4 cut(s) | 1031, 1313, 1547, 1946 |
| NsiI | ATGCAT | 2 cut(s) | 94, 397 |
| NspI | RCATGY | 4 cut(s) | 124, 1614, 1658, 1965 |
| OliI | CACNNNNGTG | 2 cut(s) | 1309, 1921 |
| PagI | TCATGA | 1 cut(s) | 423 |
| PciI | ACATGT | 1 cut(s) | 120 |
| PctI | GAATGC | 1 cut(s) | 1715 |
| PdmI | GAANNNNTTC | 1 cut(s) | 803 |
| PfeI | GAWTC | 7 cut(s) | 137, 520, 804, 953, 1092, 1426, 1600 |
| PflFI | GACNNNGTC | 2 cut(s) | 565, 1070 |
| PkrI | GCNGC | 5 cut(s) | 283, 693, 696, 752, 1516 |
| PleI | GAGTC | 1 cut(s) | 1856 |
| PpsI | GAGTC | 1 cut(s) | 1856 |
| Ppu21I | YACGTR | 1 cut(s) | 322 |
| PpuMI | RGGWCCY | 3 cut(s) | 158, 1687, 1939 |
| PscI | ACATGT | 1 cut(s) | 120 |
| PsiI | TTATAA | 1 cut(s) | 1028 |
| Psp5II | RGGWCCY | 3 cut(s) | 158, 1687, 1939 |
| PspEI | GGTNACC | 1 cut(s) | 1547 |
| PspFI | CCCAGC | 2 cut(s) | 312, 706 |
| PspN4I | GGNNCC | 9 cut(s) | 159, 183, 790, 791, 1012, 1074, 1268, 1689, 1940 |
| PspOMI | GGGCCC | 1 cut(s) | 789 |
| PspPPI | RGGWCCY | 3 cut(s) | 158, 1687, 1939 |
| PstI | CTGCAG | 2 cut(s) | 696, 975 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1095 |
| PsuI | RGATCY | 3 cut(s) | 68, 1774, 1883 |
| PsyI | GACNNNGTC | 2 cut(s) | 565, 1070 |
| RsaI | GTAC | 4 cut(s) | 326, 776, 1891, 1908 |
| RsaNI | GTAC | 4 cut(s) | 325, 775, 1890, 1907 |
| RseI | CAYNNNNRTG | 4 cut(s) | 221, 422, 1309, 1921 |
| SatI | GCNGC | 5 cut(s) | 282, 692, 695, 751, 1515 |
| Sau3AI | GATC | 6 cut(s) | 68, 426, 576, 891, 1774, 1883 |
| SchI | GAGTC | 1 cut(s) | 1856 |
| ScrFI | CCNGG | 4 cut(s) | 1015, 1137, 1691, 1833 |
| SduI | GDGCHC | 5 cut(s) | 450, 458, 647, 793, 847 |
| SfaNI | GCATC | 5 cut(s) | 79, 404, 886, 1041, 1981 |
| SfcI | CTRYAG | 3 cut(s) | 692, 971, 1518 |
| SinI | GGWCC | 7 cut(s) | 158, 1072, 1153, 1594, 1687, 1796, 1939 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 221, 422, 1309, 1921 |
| SmlI | CTYRAG | 3 cut(s) | 745, 794, 1718 |
| SmoI | CTYRAG | 3 cut(s) | 745, 794, 1718 |
| Sse9I | AATT | 9 cut(s) | 194, 203, 300, 506, 635, 659, 1641, 1930, 2062 |
| SsiI | CCGC | 2 cut(s) | 697, 1515 |
| SspMI | CTAG | 4 cut(s) | 489, 1368, 1898, 1943 |
| StyD4I | CCNGG | 4 cut(s) | 1013, 1135, 1689, 1831 |
| StyI | CCWWGG | 2 cut(s) | 1459, 1942 |
| TaaI | ACNGT | 4 cut(s) | 1224, 1526, 1591, 1849 |
| TaiI | ACGT | 3 cut(s) | 324, 1071, 1704 |
| TaqI | TCGA | 3 cut(s) | 384, 894, 1621 |
| TasI | AATT | 9 cut(s) | 194, 203, 300, 506, 635, 659, 1641, 1930, 2062 |
| TatI | WGTACW | 2 cut(s) | 774, 1906 |
| TauI | GCSGC | 1 cut(s) | 1517 |
| TfiI | GAWTC | 7 cut(s) | 137, 520, 804, 953, 1092, 1426, 1600 |
| TscAI | CASTG | 2 cut(s) | 1306, 1316 |
| TseFI | GTSAC | 4 cut(s) | 1031, 1313, 1547, 1946 |
| TseI | GCWGC | 4 cut(s) | 281, 691, 694, 750 |
| Tsp45I | GTSAC | 4 cut(s) | 1031, 1313, 1547, 1946 |
| TspRI | CASTG | 2 cut(s) | 1306, 1316 |
| Tth111I | GACNNNGTC | 2 cut(s) | 565, 1070 |
| Vha464I | CTTAAG | 1 cut(s) | 794 |
| VneI | GTGCAC | 1 cut(s) | 454 |
| VpaK11BI | GGWCC | 7 cut(s) | 158, 1072, 1153, 1594, 1687, 1796, 1939 |
| XapI | RAATTY | 4 cut(s) | 194, 203, 506, 1641 |
| XbaI | TCTAGA | 1 cut(s) | 488 |
| XceI | RCATGY | 4 cut(s) | 124, 1614, 1658, 1965 |
| XmaJI | CCTAGG | 1 cut(s) | 1942 |
| XmiI | GTMKAC | 1 cut(s) | 569 |
| XmnI | GAANNNNTTC | 1 cut(s) | 803 |
| XspI | CTAG | 4 cut(s) | 489, 1368, 1898, 1943 |
| Zsp2I | ATGCAT | 2 cut(s) | 94, 397 |