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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1022 |
| Acc36I | ACCTGC | 1 cut(s) | 1022 |
| AcoI | YGGCCR | 1 cut(s) | 1049 |
| AcsI | RAATTY | 5 cut(s) | 212, 258, 409, 510, 824 |
| AdeI | CACNNNGTG | 1 cut(s) | 988 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 431 |
| AflIII | ACRYGT | 1 cut(s) | 956 |
| AgsI | TTSAA | 9 cut(s) | 79, 142, 217, 359, 400, 612, 641, 874, 935 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 785, 817 |
| AleI | CACNNNNGTG | 1 cut(s) | 45 |
| AluBI | AGCT | 4 cut(s) | 162, 307, 320, 650 |
| AluI | AGCT | 4 cut(s) | 162, 307, 320, 650 |
| Alw26I | GTCTC | 2 cut(s) | 777, 1090 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 650 |
| AoxI | GGCC | 7 cut(s) | 119, 330, 469, 528, 749, 891, 1049 |
| ApeKI | GCWGC | 1 cut(s) | 351 |
| ApoI | RAATTY | 5 cut(s) | 212, 258, 409, 510, 824 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 1068 |
| AspS9I | GGNCC | 6 cut(s) | 119, 330, 469, 528, 851, 891 |
| AsuHPI | GGTGA | 1 cut(s) | 65 |
| AvaII | GGWCC | 1 cut(s) | 851 |
| BaeGI | GKGCMC | 2 cut(s) | 42, 625 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 31 |
| BalI | TGGCCA | 1 cut(s) | 1051 |
| BbvI | GCAGC | 1 cut(s) | 363 |
| BccI | CCATC | 7 cut(s) | 44, 65, 283, 334, 434, 832, 1017 |
| BciVI | GTATCC | 1 cut(s) | 991 |
| BclI | TGATCA | 1 cut(s) | 781 |
| BcoDI | GTCTC | 2 cut(s) | 777, 1090 |
| BfaI | CTAG | 3 cut(s) | 249, 885, 918 |
| BfmI | CTRYAG | 1 cut(s) | 1015 |
| BfuAI | ACCTGC | 1 cut(s) | 1022 |
| BfuI | GTATCC | 1 cut(s) | 991 |
| BisI | GCNGC | 1 cut(s) | 352 |
| BlsI | GCNGC | 1 cut(s) | 353 |
| Bme18I | GGWCC | 1 cut(s) | 851 |
| BmgT120I | GGNCC | 6 cut(s) | 119, 330, 469, 528, 851, 891 |
| BmiI | GGNNCC | 1 cut(s) | 120 |
| BmsI | GCATC | 2 cut(s) | 94, 310 |
| BpmI | CTGGAG | 1 cut(s) | 1072 |
| Bpu10I | CCTNAGC | 1 cut(s) | 321 |
| BpuEI | CTTGAG | 1 cut(s) | 932 |
| BsaAI | YACGTR | 1 cut(s) | 857 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1027 |
| BsaI | GGTCTC | 2 cut(s) | 777, 1090 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 431 |
| Bse1I | ACTGG | 2 cut(s) | 472, 752 |
| Bse3DI | GCAATG | 1 cut(s) | 741 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1027 |
| BseGI | GGATG | 3 cut(s) | 294, 445, 449 |
| BseJI | GATNNNNATC | 1 cut(s) | 1027 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 431 |
| BseMI | GCAATG | 1 cut(s) | 741 |
| BseNI | ACTGG | 2 cut(s) | 472, 752 |
| BseRI | GAGGAG | 1 cut(s) | 725 |
| BseSI | GKGCMC | 2 cut(s) | 42, 625 |
| BseXI | GCAGC | 1 cut(s) | 363 |
| BsgI | GTGCAG | 2 cut(s) | 81, 439 |
| BshFI | GGCC | 7 cut(s) | 121, 332, 471, 530, 751, 893, 1051 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 431 |
| BsmAI | GTCTC | 2 cut(s) | 777, 1090 |
| BsmI | GAATGC | 2 cut(s) | 271, 886 |
| BsnI | GGCC | 7 cut(s) | 121, 332, 471, 530, 751, 893, 1051 |
| Bso31I | GGTCTC | 2 cut(s) | 777, 1090 |
| Bsp1286I | GDGCHC | 2 cut(s) | 42, 625 |
| Bsp143I | GATC | 2 cut(s) | 361, 781 |
| BspANI | GGCC | 7 cut(s) | 121, 332, 471, 530, 751, 893, 1051 |
| BspHI | TCATGA | 1 cut(s) | 391 |
| BspLI | GGNNCC | 1 cut(s) | 120 |
| BspMAI | CTGCAG | 1 cut(s) | 1019 |
| BspMI | ACCTGC | 1 cut(s) | 1022 |
| BspTNI | GGTCTC | 2 cut(s) | 777, 1090 |
| BsrDI | GCAATG | 1 cut(s) | 741 |
| BsrI | ACTGG | 2 cut(s) | 472, 752 |
| BssMI | GATC | 2 cut(s) | 361, 781 |
| Bst6I | CTCTTC | 1 cut(s) | 398 |
| BstBAI | YACGTR | 1 cut(s) | 857 |
| BstDEI | CTNAG | 3 cut(s) | 321, 336, 581 |
| BstF5I | GGATG | 3 cut(s) | 294, 445, 449 |
| BstKTI | GATC | 2 cut(s) | 364, 784 |
| BstMAI | GTCTC | 2 cut(s) | 777, 1090 |
| BstMBI | GATC | 2 cut(s) | 361, 781 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 890, 1062 |
| BstNSI | RCATGY | 1 cut(s) | 960 |
| BstSFI | CTRYAG | 1 cut(s) | 1015 |
| BstSLI | GKGCMC | 2 cut(s) | 42, 625 |
| BstV1I | GCAGC | 1 cut(s) | 363 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 340 |
| BsuI | GTATCC | 1 cut(s) | 991 |
| BsuRI | GGCC | 7 cut(s) | 121, 332, 471, 530, 751, 893, 1051 |
| BtsCI | GGATG | 3 cut(s) | 294, 445, 449 |
| BtsI | GCAGTG | 1 cut(s) | 703 |
| BtsIMutI | CAGTG | 1 cut(s) | 703 |
| BveI | ACCTGC | 1 cut(s) | 1022 |
| CaiI | CAGNNNCTG | 1 cut(s) | 650 |
| CciI | TCATGA | 1 cut(s) | 391 |
| Cfr13I | GGNCC | 6 cut(s) | 119, 330, 469, 528, 851, 891 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 679, 714 |
| DdeI | CTNAG | 3 cut(s) | 321, 336, 581 |
| DpnI | GATC | 2 cut(s) | 363, 783 |
| DpnII | GATC | 2 cut(s) | 361, 781 |
| DraIII | CACNNNGTG | 1 cut(s) | 988 |
| EaeI | YGGCCR | 1 cut(s) | 1049 |
| Eam1104I | CTCTTC | 1 cut(s) | 398 |
| EarI | CTCTTC | 1 cut(s) | 398 |
| Eco31I | GGTCTC | 2 cut(s) | 777, 1090 |
| Eco47I | GGWCC | 1 cut(s) | 851 |
| EcoO109I | RGGNCCY | 1 cut(s) | 119 |
| EcoRI | GAATTC | 4 cut(s) | 212, 258, 409, 824 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 209, 241 |
| FbaI | TGATCA | 1 cut(s) | 781 |
| Fnu4HI | GCNGC | 1 cut(s) | 352 |
| FokI | GGATG | 3 cut(s) | 301, 452, 456 |
| Fsp4HI | GCNGC | 1 cut(s) | 352 |
| FspBI | CTAG | 3 cut(s) | 249, 885, 918 |
| GluI | GCNGC | 1 cut(s) | 352 |
| GsuI | CTGGAG | 1 cut(s) | 1072 |
| HaeIII | GGCC | 7 cut(s) | 121, 332, 471, 530, 751, 893, 1051 |
| HincII | GTYRAC | 1 cut(s) | 980 |
| HindII | GTYRAC | 1 cut(s) | 980 |
| HinfI | GANTC | 4 cut(s) | 92, 380, 914, 1028 |
| HphI | GGTGA | 1 cut(s) | 65 |
| Hpy166II | GTNNAC | 4 cut(s) | 181, 463, 854, 980 |
| Hpy188I | TCNGA | 4 cut(s) | 97, 264, 453, 573 |
| Hpy188III | TCNNGA | 4 cut(s) | 392, 757, 911, 1089 |
| Hpy8I | GTNNAC | 4 cut(s) | 181, 463, 854, 980 |
| HpyAV | CCTTC | 2 cut(s) | 28, 50 |
| HpyCH4IV | ACGT | 1 cut(s) | 856 |
| HpyCH4V | TGCA | 9 cut(s) | 62, 88, 170, 420, 524, 991, 1011, 1017, 1056 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 890, 1062 |
| HpyF3I | CTNAG | 3 cut(s) | 321, 336, 581 |
| HpySE526I | ACGT | 1 cut(s) | 856 |
| Ksp22I | TGATCA | 1 cut(s) | 781 |
| Kzo9I | GATC | 2 cut(s) | 361, 781 |
| LpnPI | CCDG | 7 cut(s) | 23, 399, 485, 765, 931, 1027, 1067 |
| Lsp1109I | GCAGC | 1 cut(s) | 363 |
| LweI | GCATC | 2 cut(s) | 94, 310 |
| MaeI | CTAG | 3 cut(s) | 249, 885, 918 |
| MaeII | ACGT | 1 cut(s) | 856 |
| MaeIII | GTNAC | 1 cut(s) | 952 |
| MalI | GATC | 2 cut(s) | 363, 783 |
| MboI | GATC | 2 cut(s) | 361, 781 |
| MboII | GAAGA | 9 cut(s) | 221, 371, 412, 415, 847, 886, 889, 911, 1032 |
| MfeI | CAATTG | 1 cut(s) | 992 |
| MhlI | GDGCHC | 2 cut(s) | 42, 625 |
| MlsI | TGGCCA | 1 cut(s) | 1051 |
| MluNI | TGGCCA | 1 cut(s) | 1051 |
| MlyI | GAGTC | 3 cut(s) | 101, 389, 923 |
| MmeI | TCCRAC | 2 cut(s) | 539, 812 |
| MnlI | CCTC | 9 cut(s) | 168, 247, 399, 695, 703, 706, 814, 835, 1082 |
| Mox20I | TGGCCA | 1 cut(s) | 1051 |
| MscI | TGGCCA | 1 cut(s) | 1051 |
| MseI | TTAA | 4 cut(s) | 164, 273, 723, 809 |
| MslI | CAYNNNNRTG | 3 cut(s) | 45, 189, 338 |
| Msp20I | TGGCCA | 1 cut(s) | 1051 |
| MunI | CAATTG | 1 cut(s) | 992 |
| Mva1269I | GAATGC | 2 cut(s) | 271, 886 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 890, 1062 |
| NdeII | GATC | 2 cut(s) | 361, 781 |
| NlaIV | GGNNCC | 1 cut(s) | 120 |
| NmuCI | GTSAC | 1 cut(s) | 952 |
| NspI | RCATGY | 1 cut(s) | 960 |
| OliI | CACNNNNGTG | 1 cut(s) | 45 |
| PagI | TCATGA | 1 cut(s) | 391 |
| PaqCI | CACCTGC | 1 cut(s) | 1022 |
| PciI | ACATGT | 1 cut(s) | 956 |
| PctI | GAATGC | 2 cut(s) | 271, 886 |
| PfeI | GAWTC | 1 cut(s) | 1028 |
| PkrI | GCNGC | 1 cut(s) | 353 |
| PleI | GAGTC | 3 cut(s) | 100, 388, 922 |
| PpsI | GAGTC | 3 cut(s) | 100, 388, 922 |
| Ppu21I | YACGTR | 1 cut(s) | 857 |
| PscI | ACATGT | 1 cut(s) | 956 |
| PspN4I | GGNNCC | 1 cut(s) | 120 |
| PspPI | GGNCC | 6 cut(s) | 119, 330, 469, 528, 851, 891 |
| PstI | CTGCAG | 1 cut(s) | 1019 |
| PstNI | CAGNNNCTG | 1 cut(s) | 650 |
| RseI | CAYNNNNRTG | 3 cut(s) | 45, 189, 338 |
| SaqAI | TTAA | 4 cut(s) | 164, 273, 723, 809 |
| SatI | GCNGC | 1 cut(s) | 352 |
| Sau3AI | GATC | 2 cut(s) | 361, 781 |
| Sau96I | GGNCC | 6 cut(s) | 119, 330, 469, 528, 851, 891 |
| SchI | GAGTC | 3 cut(s) | 101, 389, 923 |
| SduI | GDGCHC | 2 cut(s) | 42, 625 |
| SfaNI | GCATC | 2 cut(s) | 94, 310 |
| SfcI | CTRYAG | 1 cut(s) | 1015 |
| SinI | GGWCC | 1 cut(s) | 851 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 45, 189, 338 |
| SmlI | CTYRAG | 1 cut(s) | 911 |
| SmoI | CTYRAG | 1 cut(s) | 911 |
| SspMI | CTAG | 3 cut(s) | 249, 885, 918 |
| TaiI | ACGT | 1 cut(s) | 859 |
| TaqI | TCGA | 1 cut(s) | 69 |
| TfiI | GAWTC | 1 cut(s) | 1028 |
| Tru1I | TTAA | 4 cut(s) | 164, 273, 723, 809 |
| Tru9I | TTAA | 4 cut(s) | 164, 273, 723, 809 |
| TscAI | CASTG | 1 cut(s) | 703 |
| TseFI | GTSAC | 1 cut(s) | 952 |
| TseI | GCWGC | 1 cut(s) | 351 |
| Tsp45I | GTSAC | 1 cut(s) | 952 |
| TspDTI | ATGAA | 7 cut(s) | 35, 47, 217, 408, 693, 709, 912 |
| TspRI | CASTG | 1 cut(s) | 703 |
| VpaK11BI | GGWCC | 1 cut(s) | 851 |
| XapI | RAATTY | 5 cut(s) | 212, 258, 409, 510, 824 |
| XceI | RCATGY | 1 cut(s) | 960 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 759, 901 |
| XspI | CTAG | 3 cut(s) | 249, 885, 918 |