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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 974 |
| AccB1I | GGYRCC | 1 cut(s) | 580 |
| AclWI | GGATC | 1 cut(s) | 129 |
| AcoI | YGGCCR | 1 cut(s) | 1387 |
| AcsI | RAATTY | 2 cut(s) | 713, 1514 |
| AcuI | CTGAAG | 4 cut(s) | 741, 753, 1065, 1198 |
| AfaI | GTAC | 5 cut(s) | 23, 131, 152, 1133, 1449 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 419, 698, 826, 1320, 1488 |
| AjnI | CCWGG | 1 cut(s) | 1540 |
| Alw26I | GTCTC | 2 cut(s) | 301, 1629 |
| AlwI | GGATC | 1 cut(s) | 129 |
| AoxI | GGCC | 4 cut(s) | 410, 689, 839, 1387 |
| ApeKI | GCWGC | 6 cut(s) | 163, 538, 875, 1091, 1572, 1643 |
| ApoI | RAATTY | 2 cut(s) | 713, 1514 |
| AseI | ATTAAT | 1 cut(s) | 315 |
| AspA2I | CCTAGG | 1 cut(s) | 167 |
| AspS9I | GGNCC | 1 cut(s) | 1479 |
| AsuHPI | GGTGA | 2 cut(s) | 241, 467 |
| AsuNHI | GCTAGC | 2 cut(s) | 727, 1697 |
| AvaII | GGWCC | 1 cut(s) | 1479 |
| AvrII | CCTAGG | 1 cut(s) | 167 |
| BalI | TGGCCA | 1 cut(s) | 1389 |
| BanI | GGYRCC | 1 cut(s) | 580 |
| BanII | GRGCYC | 1 cut(s) | 665 |
| BbsI | GAAGAC | 4 cut(s) | 239, 244, 1461, 1628 |
| BbvI | GCAGC | 6 cut(s) | 150, 550, 887, 1078, 1584, 1630 |
| BccI | CCATC | 6 cut(s) | 41, 62, 220, 479, 515, 602 |
| BceAI | ACGGC | 2 cut(s) | 676, 742 |
| BciT130I | CCWGG | 1 cut(s) | 1542 |
| BciVI | GTATCC | 1 cut(s) | 1485 |
| BcoDI | GTCTC | 2 cut(s) | 301, 1629 |
| BfmI | CTRYAG | 2 cut(s) | 807, 1710 |
| BfuAI | ACCTGC | 1 cut(s) | 974 |
| BfuI | GTATCC | 1 cut(s) | 1485 |
| BisI | GCNGC | 6 cut(s) | 164, 539, 876, 1092, 1573, 1644 |
| BlnI | CCTAGG | 1 cut(s) | 167 |
| BlsI | GCNGC | 6 cut(s) | 165, 540, 877, 1093, 1574, 1645 |
| Bme1390I | CCNGG | 1 cut(s) | 1542 |
| Bme18I | GGWCC | 1 cut(s) | 1479 |
| BmgT120I | GGNCC | 1 cut(s) | 1479 |
| BmiI | GGNNCC | 2 cut(s) | 582, 662 |
| BmrFI | CCNGG | 1 cut(s) | 1542 |
| BmsI | GCATC | 8 cut(s) | 370, 758, 785, 1042, 1064, 1103, 1225, 1516 |
| BmtI | GCTAGC | 2 cut(s) | 731, 1701 |
| BpiI | GAAGAC | 4 cut(s) | 239, 244, 1461, 1628 |
| BpmI | CTGGAG | 3 cut(s) | 729, 1104, 1260 |
| Bpu10I | CCTNAGC | 1 cut(s) | 291 |
| BpuEI | CTTGAG | 5 cut(s) | 242, 765, 852, 906, 1677 |
| Bsa29I | ATCGAT | 1 cut(s) | 1417 |
| BsaI | GGTCTC | 2 cut(s) | 301, 1629 |
| BsaJI | CCNNGG | 3 cut(s) | 167, 692, 1626 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1115, 1145 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 419, 698, 826, 1320, 1488 |
| Bse1I | ACTGG | 3 cut(s) | 265, 1087, 1304 |
| Bse3DI | GCAATG | 1 cut(s) | 187 |
| BseBI | CCWGG | 1 cut(s) | 1542 |
| BseCI | ATCGAT | 1 cut(s) | 1417 |
| BseDI | CCNNGG | 3 cut(s) | 167, 692, 1626 |
| BseGI | GGATG | 8 cut(s) | 52, 304, 351, 526, 749, 1055, 1094, 1474 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 419, 698, 826, 1320, 1488 |
| BseMI | GCAATG | 1 cut(s) | 187 |
| BseMII | CTCAG | 2 cut(s) | 786, 1398 |
| BseNI | ACTGG | 3 cut(s) | 265, 1087, 1304 |
| BseRI | GAGGAG | 5 cut(s) | 548, 700, 1101, 1233, 1487 |
| BseXI | GCAGC | 6 cut(s) | 150, 550, 887, 1078, 1584, 1630 |
| BseYI | CCCAGC | 1 cut(s) | 753 |
| BshFI | GGCC | 4 cut(s) | 412, 691, 841, 1389 |
| BshNI | GGYRCC | 1 cut(s) | 580 |
| BshVI | ATCGAT | 1 cut(s) | 1417 |
| BslFI | GGGAC | 1 cut(s) | 636 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 419, 698, 826, 1320, 1488 |
| BsmAI | GTCTC | 2 cut(s) | 301, 1629 |
| BsmFI | GGGAC | 1 cut(s) | 636 |
| BsmI | GAATGC | 1 cut(s) | 1229 |
| BsnI | GGCC | 4 cut(s) | 412, 691, 841, 1389 |
| Bso31I | GGTCTC | 2 cut(s) | 301, 1629 |
| Bsp1286I | GDGCHC | 1 cut(s) | 665 |
| Bsp143I | GATC | 3 cut(s) | 121, 823, 1112 |
| Bsp19I | CCATGG | 1 cut(s) | 1626 |
| BspANI | GGCC | 4 cut(s) | 412, 691, 841, 1389 |
| BspCNI | CTCAG | 2 cut(s) | 787, 1399 |
| BspDI | ATCGAT | 1 cut(s) | 1417 |
| BspLI | GGNNCC | 2 cut(s) | 582, 662 |
| BspMI | ACCTGC | 1 cut(s) | 974 |
| BspOI | GCTAGC | 2 cut(s) | 731, 1701 |
| BspPI | GGATC | 1 cut(s) | 129 |
| BspQI | GCTCTTC | 1 cut(s) | 717 |
| BspT107I | GGYRCC | 1 cut(s) | 580 |
| BspTNI | GGTCTC | 2 cut(s) | 301, 1629 |
| BsrDI | GCAATG | 1 cut(s) | 187 |
| BsrI | ACTGG | 3 cut(s) | 265, 1087, 1304 |
| BssECI | CCNNGG | 3 cut(s) | 167, 692, 1626 |
| BssMI | GATC | 3 cut(s) | 121, 823, 1112 |
| BssT1I | CCWWGG | 2 cut(s) | 167, 1626 |
| Bst2UI | CCWGG | 1 cut(s) | 1542 |
| Bst6I | CTCTTC | 3 cut(s) | 717, 967, 1188 |
| BstC8I | GCNNGC | 3 cut(s) | 467, 729, 1699 |
| BstDEI | CTNAG | 4 cut(s) | 291, 569, 795, 1407 |
| BstDSI | CCRYGG | 2 cut(s) | 692, 1626 |
| BstF5I | GGATG | 8 cut(s) | 52, 304, 351, 526, 749, 1055, 1094, 1474 |
| BstKTI | GATC | 3 cut(s) | 124, 826, 1115 |
| BstMAI | GTCTC | 2 cut(s) | 301, 1629 |
| BstMBI | GATC | 3 cut(s) | 121, 823, 1112 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 409, 1721 |
| BstNI | CCWGG | 1 cut(s) | 1542 |
| BstSCI | CCNGG | 1 cut(s) | 1540 |
| BstSFI | CTRYAG | 2 cut(s) | 807, 1710 |
| BstV1I | GCAGC | 6 cut(s) | 150, 550, 887, 1078, 1584, 1630 |
| BstV2I | GAAGAC | 4 cut(s) | 239, 244, 1461, 1628 |
| BstX2I | RGATCY | 1 cut(s) | 121 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 761 |
| BstYI | RGATCY | 1 cut(s) | 121 |
| Bsu15I | ATCGAT | 1 cut(s) | 1417 |
| BsuI | GTATCC | 1 cut(s) | 1485 |
| BsuRI | GGCC | 4 cut(s) | 412, 691, 841, 1389 |
| BsuTUI | ATCGAT | 1 cut(s) | 1417 |
| BtgI | CCRYGG | 2 cut(s) | 692, 1626 |
| BtsCI | GGATG | 8 cut(s) | 52, 304, 351, 526, 749, 1055, 1094, 1474 |
| BtsI | GCAGTG | 1 cut(s) | 1234 |
| BtsIMutI | CAGTG | 2 cut(s) | 1021, 1234 |
| BveI | ACCTGC | 1 cut(s) | 974 |
| Cac8I | GCNNGC | 3 cut(s) | 467, 729, 1699 |
| Cfr13I | GGNCC | 1 cut(s) | 1479 |
| ClaI | ATCGAT | 1 cut(s) | 1417 |
| Csp6I | GTAC | 5 cut(s) | 22, 130, 151, 1132, 1448 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 31, 66, 1362, 1397 |
| CviQI | GTAC | 5 cut(s) | 22, 130, 151, 1132, 1448 |
| DdeI | CTNAG | 4 cut(s) | 291, 569, 795, 1407 |
| DpnI | GATC | 3 cut(s) | 123, 825, 1114 |
| DpnII | GATC | 3 cut(s) | 121, 823, 1112 |
| EaeI | YGGCCR | 1 cut(s) | 1387 |
| Eam1104I | CTCTTC | 3 cut(s) | 717, 967, 1188 |
| EarI | CTCTTC | 3 cut(s) | 717, 967, 1188 |
| Eco130I | CCWWGG | 2 cut(s) | 167, 1626 |
| Eco24I | GRGCYC | 1 cut(s) | 665 |
| Eco31I | GGTCTC | 2 cut(s) | 301, 1629 |
| Eco47I | GGWCC | 1 cut(s) | 1479 |
| Eco57I | CTGAAG | 4 cut(s) | 741, 753, 1065, 1198 |
| EcoRII | CCWGG | 1 cut(s) | 1540 |
| EcoT14I | CCWWGG | 2 cut(s) | 167, 1626 |
| EcoT22I | ATGCAT | 2 cut(s) | 1057, 1680 |
| EcoT38I | GRGCYC | 1 cut(s) | 665 |
| ErhI | CCWWGG | 2 cut(s) | 167, 1626 |
| FaqI | GGGAC | 1 cut(s) | 636 |
| Fnu4HI | GCNGC | 6 cut(s) | 164, 539, 876, 1092, 1573, 1644 |
| FokI | GGATG | 8 cut(s) | 59, 311, 358, 533, 736, 1042, 1081, 1481 |
| FriOI | GRGCYC | 1 cut(s) | 665 |
| Fsp4HI | GCNGC | 6 cut(s) | 164, 539, 876, 1092, 1573, 1644 |
| GluI | GCNGC | 6 cut(s) | 164, 539, 876, 1092, 1573, 1644 |
| GsaI | CCCAGC | 1 cut(s) | 757 |
| GsuI | CTGGAG | 3 cut(s) | 729, 1104, 1260 |
| HaeIII | GGCC | 4 cut(s) | 412, 691, 841, 1389 |
| HincII | GTYRAC | 1 cut(s) | 1739 |
| HindII | GTYRAC | 1 cut(s) | 1739 |
| HinfI | GANTC | 4 cut(s) | 331, 503, 1329, 1411 |
| HphI | GGTGA | 2 cut(s) | 241, 467 |
| Hpy166II | GTNNAC | 3 cut(s) | 989, 1667, 1739 |
| Hpy188I | TCNGA | 3 cut(s) | 721, 1217, 1408 |
| Hpy188III | TCNNGA | 5 cut(s) | 74, 869, 902, 923, 1523 |
| Hpy8I | GTNNAC | 3 cut(s) | 989, 1667, 1739 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 409, 1721 |
| HpyF3I | CTNAG | 4 cut(s) | 291, 569, 795, 1407 |
| Kzo9I | GATC | 3 cut(s) | 121, 823, 1112 |
| LguI | GCTCTTC | 1 cut(s) | 717 |
| LmnI | GCTCC | 5 cut(s) | 535, 660, 748, 996, 1088 |
| Lsp1109I | GCAGC | 6 cut(s) | 150, 550, 887, 1078, 1584, 1630 |
| LweI | GCATC | 8 cut(s) | 370, 758, 785, 1042, 1064, 1103, 1225, 1516 |
| MaeIII | GTNAC | 4 cut(s) | 572, 614, 949, 1078 |
| MalI | GATC | 3 cut(s) | 123, 825, 1114 |
| MboI | GATC | 3 cut(s) | 121, 823, 1112 |
| MflI | RGATCY | 1 cut(s) | 121 |
| MhlI | GDGCHC | 1 cut(s) | 665 |
| MlsI | TGGCCA | 1 cut(s) | 1389 |
| MluCI | AATT | 6 cut(s) | 57, 198, 322, 496, 713, 1514 |
| MluNI | TGGCCA | 1 cut(s) | 1389 |
| MlyI | GAGTC | 1 cut(s) | 1420 |
| MmeI | TCCRAC | 1 cut(s) | 1712 |
| Mox20I | TGGCCA | 1 cut(s) | 1389 |
| Mph1103I | ATGCAT | 2 cut(s) | 1057, 1680 |
| MscI | TGGCCA | 1 cut(s) | 1389 |
| MseI | TTAA | 7 cut(s) | 315, 444, 561, 711, 836, 1421, 1554 |
| Msp20I | TGGCCA | 1 cut(s) | 1389 |
| MspR9I | CCNGG | 1 cut(s) | 1542 |
| Mva1269I | GAATGC | 1 cut(s) | 1229 |
| MvaI | CCWGG | 1 cut(s) | 1542 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 409, 1721 |
| NcoI | CCATGG | 1 cut(s) | 1626 |
| NdeII | GATC | 3 cut(s) | 121, 823, 1112 |
| NheI | GCTAGC | 2 cut(s) | 727, 1697 |
| NlaIV | GGNNCC | 2 cut(s) | 582, 662 |
| NmuCI | GTSAC | 2 cut(s) | 572, 614 |
| NsiI | ATGCAT | 2 cut(s) | 1057, 1680 |
| PciSI | GCTCTTC | 1 cut(s) | 717 |
| PctI | GAATGC | 1 cut(s) | 1229 |
| PfeI | GAWTC | 3 cut(s) | 331, 503, 1329 |
| PkrI | GCNGC | 6 cut(s) | 165, 540, 877, 1093, 1574, 1645 |
| PleI | GAGTC | 1 cut(s) | 1419 |
| PpsI | GAGTC | 1 cut(s) | 1419 |
| PshBI | ATTAAT | 1 cut(s) | 315 |
| Psp6I | CCWGG | 1 cut(s) | 1540 |
| PspFI | CCCAGC | 1 cut(s) | 753 |
| PspGI | CCWGG | 1 cut(s) | 1540 |
| PspN4I | GGNNCC | 2 cut(s) | 582, 662 |
| PspPI | GGNCC | 1 cut(s) | 1479 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 409, 441 |
| PsuI | RGATCY | 1 cut(s) | 121 |
| RsaI | GTAC | 5 cut(s) | 23, 131, 152, 1133, 1449 |
| RsaNI | GTAC | 5 cut(s) | 22, 130, 151, 1132, 1448 |
| SapI | GCTCTTC | 1 cut(s) | 717 |
| SaqAI | TTAA | 7 cut(s) | 315, 444, 561, 711, 836, 1421, 1554 |
| SatI | GCNGC | 6 cut(s) | 164, 539, 876, 1092, 1573, 1644 |
| Sau3AI | GATC | 3 cut(s) | 121, 823, 1112 |
| Sau96I | GGNCC | 1 cut(s) | 1479 |
| SchI | GAGTC | 1 cut(s) | 1420 |
| ScrFI | CCNGG | 1 cut(s) | 1542 |
| SduI | GDGCHC | 1 cut(s) | 665 |
| SfaNI | GCATC | 8 cut(s) | 370, 758, 785, 1042, 1064, 1103, 1225, 1516 |
| SfcI | CTRYAG | 2 cut(s) | 807, 1710 |
| SinI | GGWCC | 1 cut(s) | 1479 |
| SmlI | CTYRAG | 5 cut(s) | 221, 780, 867, 921, 1692 |
| SmoI | CTYRAG | 5 cut(s) | 221, 780, 867, 921, 1692 |
| Sse9I | AATT | 6 cut(s) | 57, 198, 322, 496, 713, 1514 |
| StyD4I | CCNGG | 1 cut(s) | 1540 |
| StyI | CCWWGG | 2 cut(s) | 167, 1626 |
| TaqI | TCGA | 1 cut(s) | 1417 |
| TasI | AATT | 6 cut(s) | 57, 198, 322, 496, 713, 1514 |
| TatI | WGTACW | 2 cut(s) | 21, 1447 |
| TfiI | GAWTC | 3 cut(s) | 331, 503, 1329 |
| Tru1I | TTAA | 7 cut(s) | 315, 444, 561, 711, 836, 1421, 1554 |
| Tru9I | TTAA | 7 cut(s) | 315, 444, 561, 711, 836, 1421, 1554 |
| TscAI | CASTG | 2 cut(s) | 1021, 1234 |
| TseFI | GTSAC | 2 cut(s) | 572, 614 |
| TseI | GCWGC | 6 cut(s) | 163, 538, 875, 1091, 1572, 1643 |
| Tsp45I | GTSAC | 2 cut(s) | 572, 614 |
| TspDTI | ATGAA | 5 cut(s) | 29, 244, 1266, 1634, 1695 |
| TspRI | CASTG | 2 cut(s) | 1021, 1234 |
| VpaK11BI | GGWCC | 1 cut(s) | 1479 |
| VspI | ATTAAT | 1 cut(s) | 315 |
| XapI | RAATTY | 2 cut(s) | 713, 1514 |
| XbaI | TCTAGA | 1 cut(s) | 73 |
| XmaJI | CCTAGG | 1 cut(s) | 167 |
| Zsp2I | ATGCAT | 2 cut(s) | 1057, 1680 |