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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 680 |
| AccBSI | CCGCTC | 1 cut(s) | 631 |
| AciI | CCGC | 2 cut(s) | 631, 678 |
| AclWI | GGATC | 1 cut(s) | 702 |
| AcoI | YGGCCR | 2 cut(s) | 646, 737 |
| AcsI | RAATTY | 2 cut(s) | 31, 522 |
| AcuI | CTGAAG | 1 cut(s) | 240 |
| AfaI | GTAC | 5 cut(s) | 280, 297, 414, 519, 585 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 510, 690 |
| AgsI | TTSAA | 2 cut(s) | 361, 510 |
| AluBI | AGCT | 3 cut(s) | 402, 637, 719 |
| AluI | AGCT | 3 cut(s) | 402, 637, 719 |
| Alw26I | GTCTC | 2 cut(s) | 56, 598 |
| AlwI | GGATC | 1 cut(s) | 702 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 500 |
| AoxI | GGCC | 6 cut(s) | 223, 363, 443, 512, 646, 737 |
| ApeKI | GCWGC | 1 cut(s) | 548 |
| ApoI | RAATTY | 2 cut(s) | 31, 522 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 34, 66 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 699 |
| AspLEI | GCGC | 1 cut(s) | 617 |
| AspS9I | GGNCC | 2 cut(s) | 76, 223 |
| AsuC2I | CCSGG | 2 cut(s) | 222, 590 |
| AsuHPI | GGTGA | 1 cut(s) | 191 |
| AsuII | TTCGAA | 1 cut(s) | 640 |
| AvaII | GGWCC | 1 cut(s) | 76 |
| AxyI | CCTNAGG | 1 cut(s) | 712 |
| BalI | TGGCCA | 1 cut(s) | 739 |
| BanI | GGYRCC | 1 cut(s) | 680 |
| BbsI | GAAGAC | 1 cut(s) | 119 |
| BbvI | GCAGC | 1 cut(s) | 535 |
| BccI | CCATC | 5 cut(s) | 10, 343, 403, 466, 652 |
| BceAI | ACGGC | 1 cut(s) | 588 |
| BcnI | CCSGG | 2 cut(s) | 222, 590 |
| BcoDI | GTCTC | 2 cut(s) | 56, 598 |
| BfaI | CTAG | 7 cut(s) | 188, 287, 332, 447, 561, 570, 748 |
| BglII | AGATCT | 1 cut(s) | 665 |
| BisI | GCNGC | 1 cut(s) | 549 |
| BlsI | GCNGC | 1 cut(s) | 550 |
| Bme1390I | CCNGG | 2 cut(s) | 222, 590 |
| Bme18I | GGWCC | 1 cut(s) | 76 |
| BmgT120I | GGNCC | 2 cut(s) | 76, 223 |
| BmiI | GGNNCC | 3 cut(s) | 382, 682, 731 |
| BmrFI | CCNGG | 2 cut(s) | 222, 590 |
| BmsI | GCATC | 1 cut(s) | 542 |
| BpiI | GAAGAC | 1 cut(s) | 119 |
| Bpu14I | TTCGAA | 1 cut(s) | 640 |
| BpuEI | CTTGAG | 5 cut(s) | 92, 252, 352, 388, 513 |
| BpuMI | CCSGG | 2 cut(s) | 222, 590 |
| BsaI | GGTCTC | 1 cut(s) | 598 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 510, 690 |
| Bse1I | ACTGG | 1 cut(s) | 504 |
| Bse21I | CCTNAGG | 1 cut(s) | 712 |
| Bse3DI | GCAATG | 1 cut(s) | 198 |
| BseGI | GGATG | 1 cut(s) | 533 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 510, 690 |
| BseMI | GCAATG | 1 cut(s) | 198 |
| BseMII | CTCAG | 2 cut(s) | 594, 726 |
| BseNI | ACTGG | 1 cut(s) | 504 |
| BseRI | GAGGAG | 1 cut(s) | 192 |
| BseXI | GCAGC | 1 cut(s) | 535 |
| BshFI | GGCC | 6 cut(s) | 225, 365, 445, 514, 648, 739 |
| BshNI | GGYRCC | 1 cut(s) | 680 |
| BsiSI | CCGG | 3 cut(s) | 221, 590, 626 |
| BslFI | GGGAC | 2 cut(s) | 33, 342 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 510, 690 |
| BsmAI | GTCTC | 2 cut(s) | 56, 598 |
| BsmFI | GGGAC | 2 cut(s) | 33, 342 |
| BsmI | GAATGC | 1 cut(s) | 104 |
| BsnI | GGCC | 6 cut(s) | 225, 365, 445, 514, 648, 739 |
| Bso31I | GGTCTC | 1 cut(s) | 598 |
| Bsp119I | TTCGAA | 1 cut(s) | 640 |
| Bsp1407I | TGTACA | 1 cut(s) | 517 |
| Bsp143I | GATC | 4 cut(s) | 437, 476, 665, 707 |
| BspACI | CCGC | 2 cut(s) | 631, 678 |
| BspANI | GGCC | 6 cut(s) | 225, 365, 445, 514, 648, 739 |
| BspCNI | CTCAG | 2 cut(s) | 593, 725 |
| BspLI | GGNNCC | 3 cut(s) | 382, 682, 731 |
| BspPI | GGATC | 1 cut(s) | 702 |
| BspT104I | TTCGAA | 1 cut(s) | 640 |
| BspT107I | GGYRCC | 1 cut(s) | 680 |
| BspTNI | GGTCTC | 1 cut(s) | 598 |
| BsrBI | CCGCTC | 1 cut(s) | 631 |
| BsrDI | GCAATG | 1 cut(s) | 198 |
| BsrGI | TGTACA | 1 cut(s) | 517 |
| BsrI | ACTGG | 1 cut(s) | 504 |
| BssMI | GATC | 4 cut(s) | 437, 476, 665, 707 |
| Bst4CI | ACNGT | 2 cut(s) | 134, 744 |
| Bst6I | CTCTTC | 3 cut(s) | 66, 259, 286 |
| BstAUI | TGTACA | 1 cut(s) | 517 |
| BstBI | TTCGAA | 1 cut(s) | 640 |
| BstDEI | CTNAG | 2 cut(s) | 580, 712 |
| BstF5I | GGATG | 1 cut(s) | 533 |
| BstHHI | GCGC | 1 cut(s) | 617 |
| BstKTI | GATC | 4 cut(s) | 440, 479, 668, 710 |
| BstMAI | GTCTC | 2 cut(s) | 56, 598 |
| BstMBI | GATC | 4 cut(s) | 437, 476, 665, 707 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 54, 494 |
| BstNSI | RCATGY | 1 cut(s) | 48 |
| BstSCI | CCNGG | 2 cut(s) | 220, 588 |
| BstV1I | GCAGC | 1 cut(s) | 535 |
| BstV2I | GAAGAC | 1 cut(s) | 119 |
| BstX2I | RGATCY | 2 cut(s) | 665, 707 |
| BstYI | RGATCY | 2 cut(s) | 665, 707 |
| Bsu36I | CCTNAGG | 1 cut(s) | 712 |
| BsuRI | GGCC | 6 cut(s) | 225, 365, 445, 514, 648, 739 |
| BtsCI | GGATG | 1 cut(s) | 533 |
| CaiI | CAGNNNCTG | 1 cut(s) | 500 |
| CfoI | GCGC | 1 cut(s) | 617 |
| Cfr13I | GGNCC | 2 cut(s) | 76, 223 |
| Csp6I | GTAC | 5 cut(s) | 279, 296, 413, 518, 584 |
| CviAII | CATG | 3 cut(s) | 45, 160, 650 |
| CviQI | GTAC | 5 cut(s) | 279, 296, 413, 518, 584 |
| DdeI | CTNAG | 2 cut(s) | 580, 712 |
| DpnI | GATC | 4 cut(s) | 439, 478, 667, 709 |
| DpnII | GATC | 4 cut(s) | 437, 476, 665, 707 |
| EaeI | YGGCCR | 2 cut(s) | 646, 737 |
| Eam1104I | CTCTTC | 3 cut(s) | 66, 259, 286 |
| EarI | CTCTTC | 3 cut(s) | 66, 259, 286 |
| Eco147I | AGGCCT | 3 cut(s) | 365, 445, 514 |
| Eco31I | GGTCTC | 1 cut(s) | 598 |
| Eco47I | GGWCC | 1 cut(s) | 76 |
| Eco57I | CTGAAG | 1 cut(s) | 240 |
| Eco81I | CCTNAGG | 1 cut(s) | 712 |
| EcoO109I | RGGNCCY | 1 cut(s) | 76 |
| EcoRI | GAATTC | 1 cut(s) | 31 |
| FaeI | CATG | 3 cut(s) | 48, 163, 653 |
| FaiI | YATR | 9 cut(s) | 46, 120, 122, 130, 143, 161, 210, 470, 651 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 63, 95 |
| FaqI | GGGAC | 2 cut(s) | 33, 342 |
| FatI | CATG | 3 cut(s) | 44, 159, 649 |
| FauI | CCCGC | 1 cut(s) | 624 |
| Fnu4HI | GCNGC | 1 cut(s) | 549 |
| FokI | GGATG | 1 cut(s) | 520 |
| Fsp4HI | GCNGC | 1 cut(s) | 549 |
| FspBI | CTAG | 7 cut(s) | 188, 287, 332, 447, 561, 570, 748 |
| GlaI | GCGC | 1 cut(s) | 616 |
| GluI | GCNGC | 1 cut(s) | 549 |
| HaeIII | GGCC | 6 cut(s) | 225, 365, 445, 514, 648, 739 |
| HapII | CCGG | 3 cut(s) | 221, 590, 626 |
| HhaI | GCGC | 1 cut(s) | 617 |
| Hin1II | CATG | 3 cut(s) | 48, 163, 653 |
| Hin6I | GCGC | 1 cut(s) | 615 |
| HinP1I | GCGC | 1 cut(s) | 615 |
| HinfI | GANTC | 2 cut(s) | 251, 642 |
| HpaII | CCGG | 3 cut(s) | 221, 590, 626 |
| HphI | GGTGA | 1 cut(s) | 191 |
| Hpy166II | GTNNAC | 1 cut(s) | 413 |
| Hpy188I | TCNGA | 2 cut(s) | 259, 705 |
| Hpy188III | TCNNGA | 6 cut(s) | 28, 109, 480, 570, 692, 714 |
| Hpy8I | GTNNAC | 1 cut(s) | 413 |
| Hpy99I | CGWCG | 1 cut(s) | 609 |
| HpyAV | CCTTC | 4 cut(s) | 176, 256, 355, 371 |
| HpyCH4III | ACNGT | 2 cut(s) | 134, 744 |
| HpyCH4IV | ACGT | 1 cut(s) | 90 |
| HpyCH4V | TGCA | 3 cut(s) | 40, 48, 551 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 54, 494 |
| HpyF3I | CTNAG | 2 cut(s) | 580, 712 |
| HpySE526I | ACGT | 1 cut(s) | 90 |
| Hsp92II | CATG | 3 cut(s) | 48, 163, 653 |
| HspAI | GCGC | 1 cut(s) | 615 |
| Kzo9I | GATC | 4 cut(s) | 437, 476, 665, 707 |
| LmnI | GCTCC | 3 cut(s) | 628, 634, 716 |
| Lsp1109I | GCAGC | 1 cut(s) | 535 |
| LweI | GCATC | 1 cut(s) | 542 |
| MaeI | CTAG | 7 cut(s) | 188, 287, 332, 447, 561, 570, 748 |
| MaeII | ACGT | 1 cut(s) | 90 |
| MaeIII | GTNAC | 3 cut(s) | 134, 195, 335 |
| MalI | GATC | 4 cut(s) | 439, 478, 667, 709 |
| MbiI | CCGCTC | 1 cut(s) | 631 |
| MboI | GATC | 4 cut(s) | 437, 476, 665, 707 |
| MboII | GAAGA | 7 cut(s) | 25, 83, 124, 246, 303, 358, 386 |
| MfeI | CAATTG | 1 cut(s) | 319 |
| MflI | RGATCY | 2 cut(s) | 665, 707 |
| MlsI | TGGCCA | 1 cut(s) | 739 |
| MluCI | AATT | 4 cut(s) | 31, 319, 522, 695 |
| MluNI | TGGCCA | 1 cut(s) | 739 |
| MlyI | GAGTC | 1 cut(s) | 245 |
| MnlI | CCTC | 9 cut(s) | 67, 170, 210, 213, 234, 376, 577, 668, 721 |
| Mox20I | TGGCCA | 1 cut(s) | 739 |
| MroXI | GAANNNNTTC | 1 cut(s) | 699 |
| MscI | TGGCCA | 1 cut(s) | 739 |
| MseI | TTAA | 2 cut(s) | 153, 246 |
| MslI | CAYNNNNRTG | 1 cut(s) | 143 |
| Msp20I | TGGCCA | 1 cut(s) | 739 |
| MspI | CCGG | 3 cut(s) | 221, 590, 626 |
| MspR9I | CCNGG | 2 cut(s) | 222, 590 |
| MunI | CAATTG | 1 cut(s) | 319 |
| Mva1269I | GAATGC | 1 cut(s) | 104 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 54, 494 |
| NciI | CCSGG | 2 cut(s) | 222, 590 |
| NdeII | GATC | 4 cut(s) | 437, 476, 665, 707 |
| NlaIII | CATG | 3 cut(s) | 48, 163, 653 |
| NlaIV | GGNNCC | 3 cut(s) | 382, 682, 731 |
| NmeAIII | GCCGAG | 1 cut(s) | 33 |
| NmuCI | GTSAC | 1 cut(s) | 335 |
| NspI | RCATGY | 1 cut(s) | 48 |
| NspV | TTCGAA | 1 cut(s) | 640 |
| PceI | AGGCCT | 3 cut(s) | 365, 445, 514 |
| PctI | GAATGC | 1 cut(s) | 104 |
| PdmI | GAANNNNTTC | 1 cut(s) | 699 |
| PfeI | GAWTC | 1 cut(s) | 642 |
| PflFI | GACNNNGTC | 1 cut(s) | 333 |
| PkrI | GCNGC | 1 cut(s) | 550 |
| PleI | GAGTC | 1 cut(s) | 245 |
| PpsI | GAGTC | 1 cut(s) | 245 |
| PpuMI | RGGWCCY | 1 cut(s) | 76 |
| Psp5II | RGGWCCY | 1 cut(s) | 76 |
| PspN4I | GGNNCC | 3 cut(s) | 382, 682, 731 |
| PspPI | GGNCC | 2 cut(s) | 76, 223 |
| PspPPI | RGGWCCY | 1 cut(s) | 76 |
| PstNI | CAGNNNCTG | 1 cut(s) | 500 |
| PsuI | RGATCY | 2 cut(s) | 665, 707 |
| PsyI | GACNNNGTC | 1 cut(s) | 333 |
| RsaI | GTAC | 5 cut(s) | 280, 297, 414, 519, 585 |
| RsaNI | GTAC | 5 cut(s) | 279, 296, 413, 518, 584 |
| RseI | CAYNNNNRTG | 1 cut(s) | 143 |
| SaqAI | TTAA | 2 cut(s) | 153, 246 |
| SatI | GCNGC | 1 cut(s) | 549 |
| Sau3AI | GATC | 4 cut(s) | 437, 476, 665, 707 |
| Sau96I | GGNCC | 2 cut(s) | 76, 223 |
| SchI | GAGTC | 1 cut(s) | 245 |
| ScrFI | CCNGG | 2 cut(s) | 222, 590 |
| SfaNI | GCATC | 1 cut(s) | 542 |
| SfuI | TTCGAA | 1 cut(s) | 640 |
| SinI | GGWCC | 1 cut(s) | 76 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 143 |
| SmlI | CTYRAG | 5 cut(s) | 107, 267, 367, 403, 528 |
| SmoI | CTYRAG | 5 cut(s) | 107, 267, 367, 403, 528 |
| Sse9I | AATT | 4 cut(s) | 31, 319, 522, 695 |
| SseBI | AGGCCT | 3 cut(s) | 365, 445, 514 |
| SsiI | CCGC | 2 cut(s) | 631, 678 |
| SspI | AATATT | 1 cut(s) | 166 |
| SspMI | CTAG | 7 cut(s) | 188, 287, 332, 447, 561, 570, 748 |
| StuI | AGGCCT | 3 cut(s) | 365, 445, 514 |
| StyD4I | CCNGG | 2 cut(s) | 220, 588 |
| TaaI | ACNGT | 2 cut(s) | 134, 744 |
| TaiI | ACGT | 1 cut(s) | 93 |
| TaqI | TCGA | 2 cut(s) | 11, 640 |
| TasI | AATT | 4 cut(s) | 31, 319, 522, 695 |
| TatI | WGTACW | 2 cut(s) | 295, 517 |
| TfiI | GAWTC | 1 cut(s) | 642 |
| Tru1I | TTAA | 2 cut(s) | 153, 246 |
| Tru9I | TTAA | 2 cut(s) | 153, 246 |
| TseFI | GTSAC | 1 cut(s) | 335 |
| TseI | GCWGC | 1 cut(s) | 548 |
| Tsp45I | GTSAC | 1 cut(s) | 335 |
| TspDTI | ATGAA | 1 cut(s) | 176 |
| Tth111I | GACNNNGTC | 1 cut(s) | 333 |
| VpaK11BI | GGWCC | 1 cut(s) | 76 |
| XapI | RAATTY | 2 cut(s) | 31, 522 |
| XbaI | TCTAGA | 1 cut(s) | 569 |
| XceI | RCATGY | 1 cut(s) | 48 |
| XmnI | GAANNNNTTC | 1 cut(s) | 699 |
| XspI | CTAG | 7 cut(s) | 188, 287, 332, 447, 561, 570, 748 |