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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1424 |
| AccB1I | GGYRCC | 1 cut(s) | 1386 |
| AccI | GTMKAC | 2 cut(s) | 889, 1233 |
| AciI | CCGC | 1 cut(s) | 384 |
| AclWI | GGATC | 3 cut(s) | 176, 189, 1153 |
| AcoI | YGGCCR | 2 cut(s) | 1261, 1549 |
| AcsI | RAATTY | 1 cut(s) | 51 |
| AcuI | CTGAAG | 1 cut(s) | 708 |
| AfaI | GTAC | 1 cut(s) | 65 |
| AflIII | ACRYGT | 1 cut(s) | 1582 |
| AgeI | ACCGGT | 1 cut(s) | 1484 |
| AgsI | TTSAA | 8 cut(s) | 57, 145, 460, 646, 851, 906, 1037, 1367 |
| Alw21I | GWGCWC | 1 cut(s) | 210 |
| AlwI | GGATC | 3 cut(s) | 176, 189, 1153 |
| AoxI | GGCC | 4 cut(s) | 434, 794, 1261, 1549 |
| ApeKI | GCWGC | 4 cut(s) | 268, 323, 469, 839 |
| ApoI | RAATTY | 1 cut(s) | 51 |
| AseI | ATTAAT | 1 cut(s) | 603 |
| AsiGI | ACCGGT | 1 cut(s) | 1484 |
| AspS9I | GGNCC | 2 cut(s) | 35, 1009 |
| AsuC2I | CCSGG | 1 cut(s) | 273 |
| AsuHPI | GGTGA | 4 cut(s) | 61, 647, 1463, 1541 |
| AsuNHI | GCTAGC | 1 cut(s) | 515 |
| AvaII | GGWCC | 2 cut(s) | 35, 1009 |
| BaeGI | GKGCMC | 1 cut(s) | 1391 |
| BalI | TGGCCA | 2 cut(s) | 1263, 1551 |
| BamHI | GGATCC | 1 cut(s) | 181 |
| BanI | GGYRCC | 1 cut(s) | 1386 |
| BanII | GRGCYC | 1 cut(s) | 210 |
| BbsI | GAAGAC | 1 cut(s) | 1119 |
| Bbv12I | GWGCWC | 1 cut(s) | 210 |
| BbvI | GCAGC | 4 cut(s) | 255, 310, 456, 826 |
| BccI | CCATC | 7 cut(s) | 107, 167, 288, 956, 1075, 1136, 1541 |
| BciVI | GTATCC | 1 cut(s) | 227 |
| BclI | TGATCA | 1 cut(s) | 1576 |
| BcnI | CCSGG | 1 cut(s) | 273 |
| BfaI | CTAG | 2 cut(s) | 516, 867 |
| BfmI | CTRYAG | 1 cut(s) | 324 |
| BfuI | GTATCC | 1 cut(s) | 227 |
| BisI | GCNGC | 4 cut(s) | 269, 324, 470, 840 |
| BlsI | GCNGC | 4 cut(s) | 270, 325, 471, 841 |
| BmcAI | AGTACT | 1 cut(s) | 65 |
| Bme1390I | CCNGG | 1 cut(s) | 273 |
| Bme18I | GGWCC | 2 cut(s) | 35, 1009 |
| BmgT120I | GGNCC | 2 cut(s) | 35, 1009 |
| BmiI | GGNNCC | 3 cut(s) | 183, 1340, 1388 |
| BmrFI | CCNGG | 1 cut(s) | 273 |
| BmsI | GCATC | 3 cut(s) | 96, 304, 310 |
| BmtI | GCTAGC | 1 cut(s) | 519 |
| BpiI | GAAGAC | 1 cut(s) | 1119 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1444, 1476 |
| BpmI | CTGGAG | 1 cut(s) | 34 |
| BpuEI | CTTGAG | 2 cut(s) | 1258, 1525 |
| BpuMI | CCSGG | 1 cut(s) | 273 |
| Bsa29I | ATCGAT | 1 cut(s) | 990 |
| BsaJI | CCNNGG | 4 cut(s) | 72, 85, 272, 431 |
| BsaWI | WCCGGW | 1 cut(s) | 1484 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 398, 428 |
| Bse118I | RCCGGY | 1 cut(s) | 1484 |
| Bse1I | ACTGG | 1 cut(s) | 385 |
| Bse3DI | GCAATG | 1 cut(s) | 216 |
| BseCI | ATCGAT | 1 cut(s) | 990 |
| BseDI | CCNNGG | 4 cut(s) | 72, 85, 272, 431 |
| BseGI | GGATG | 5 cut(s) | 299, 424, 595, 1147, 1552 |
| BseMI | GCAATG | 1 cut(s) | 216 |
| BseMII | CTCAG | 2 cut(s) | 177, 402 |
| BseNI | ACTGG | 1 cut(s) | 385 |
| BseRI | GAGGAG | 2 cut(s) | 1082, 1298 |
| BseSI | GKGCMC | 1 cut(s) | 1391 |
| BseXI | GCAGC | 4 cut(s) | 255, 310, 456, 826 |
| BshFI | GGCC | 4 cut(s) | 436, 796, 1263, 1551 |
| BshNI | GGYRCC | 1 cut(s) | 1386 |
| BshTI | ACCGGT | 1 cut(s) | 1484 |
| BshVI | ATCGAT | 1 cut(s) | 990 |
| BsiHKAI | GWGCWC | 1 cut(s) | 210 |
| BsiSI | CCGG | 2 cut(s) | 272, 1485 |
| BslFI | GGGAC | 3 cut(s) | 130, 289, 1412 |
| BsmFI | GGGAC | 3 cut(s) | 130, 289, 1412 |
| BsmI | GAATGC | 1 cut(s) | 724 |
| BsnI | GGCC | 4 cut(s) | 436, 796, 1263, 1551 |
| Bsp1286I | GDGCHC | 2 cut(s) | 210, 1391 |
| Bsp143I | GATC | 3 cut(s) | 181, 1145, 1576 |
| Bsp19I | CCATGG | 2 cut(s) | 72, 85 |
| BspACI | CCGC | 1 cut(s) | 384 |
| BspANI | GGCC | 4 cut(s) | 436, 796, 1263, 1551 |
| BspCNI | CTCAG | 2 cut(s) | 178, 403 |
| BspDI | ATCGAT | 1 cut(s) | 990 |
| BspLI | GGNNCC | 3 cut(s) | 183, 1340, 1388 |
| BspMAI | CTGCAG | 1 cut(s) | 328 |
| BspOI | GCTAGC | 1 cut(s) | 519 |
| BspPI | GGATC | 3 cut(s) | 176, 189, 1153 |
| BspT107I | GGYRCC | 1 cut(s) | 1386 |
| BsrDI | GCAATG | 1 cut(s) | 216 |
| BsrFI | RCCGGY | 1 cut(s) | 1484 |
| BsrI | ACTGG | 1 cut(s) | 385 |
| BssAI | RCCGGY | 1 cut(s) | 1484 |
| BssECI | CCNNGG | 4 cut(s) | 72, 85, 272, 431 |
| BssMI | GATC | 3 cut(s) | 181, 1145, 1576 |
| BssT1I | CCWWGG | 3 cut(s) | 72, 85, 431 |
| Bst6I | CTCTTC | 1 cut(s) | 1032 |
| BstC8I | GCNNGC | 4 cut(s) | 474, 517, 798, 1458 |
| BstDEI | CTNAG | 5 cut(s) | 138, 186, 411, 1289, 1601 |
| BstDSI | CCRYGG | 2 cut(s) | 72, 85 |
| BstF5I | GGATG | 5 cut(s) | 299, 424, 595, 1147, 1552 |
| BstKTI | GATC | 3 cut(s) | 184, 1148, 1579 |
| BstMBI | GATC | 3 cut(s) | 181, 1145, 1576 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 323 |
| BstNSI | RCATGY | 1 cut(s) | 1586 |
| BstSCI | CCNGG | 1 cut(s) | 271 |
| BstSFI | CTRYAG | 1 cut(s) | 324 |
| BstSLI | GKGCMC | 1 cut(s) | 1391 |
| BstV1I | GCAGC | 4 cut(s) | 255, 310, 456, 826 |
| BstV2I | GAAGAC | 1 cut(s) | 1119 |
| BstX2I | RGATCY | 2 cut(s) | 181, 1145 |
| BstYI | RGATCY | 2 cut(s) | 181, 1145 |
| Bsu15I | ATCGAT | 1 cut(s) | 990 |
| BsuI | GTATCC | 1 cut(s) | 227 |
| BsuRI | GGCC | 4 cut(s) | 436, 796, 1263, 1551 |
| BsuTUI | ATCGAT | 1 cut(s) | 990 |
| BtgI | CCRYGG | 2 cut(s) | 72, 85 |
| BtsCI | GGATG | 5 cut(s) | 299, 424, 595, 1147, 1552 |
| BtsIMutI | CAGTG | 2 cut(s) | 378, 1119 |
| Cac8I | GCNNGC | 4 cut(s) | 474, 517, 798, 1458 |
| Cfr10I | RCCGGY | 1 cut(s) | 1484 |
| Cfr13I | GGNCC | 2 cut(s) | 35, 1009 |
| ClaI | ATCGAT | 1 cut(s) | 990 |
| Csp6I | GTAC | 1 cut(s) | 64 |
| CspAI | ACCGGT | 1 cut(s) | 1484 |
| CviAII | CATG | 9 cut(s) | 73, 86, 198, 222, 538, 755, 1137, 1218, 1583 |
| CviQI | GTAC | 1 cut(s) | 64 |
| DdeI | CTNAG | 5 cut(s) | 138, 186, 411, 1289, 1601 |
| DpnI | GATC | 3 cut(s) | 183, 1147, 1578 |
| DpnII | GATC | 3 cut(s) | 181, 1145, 1576 |
| DraI | TTTAAA | 1 cut(s) | 913 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1424 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1424 |
| EaeI | YGGCCR | 2 cut(s) | 1261, 1549 |
| Eam1104I | CTCTTC | 1 cut(s) | 1032 |
| EarI | CTCTTC | 1 cut(s) | 1032 |
| Ecl136II | GAGCTC | 1 cut(s) | 208 |
| Eco130I | CCWWGG | 3 cut(s) | 72, 85, 431 |
| Eco147I | AGGCCT | 2 cut(s) | 436, 796 |
| Eco24I | GRGCYC | 1 cut(s) | 210 |
| Eco47I | GGWCC | 2 cut(s) | 35, 1009 |
| Eco53kI | GAGCTC | 1 cut(s) | 208 |
| Eco57I | CTGAAG | 1 cut(s) | 708 |
| EcoICRI | GAGCTC | 1 cut(s) | 208 |
| EcoT14I | CCWWGG | 3 cut(s) | 72, 85, 431 |
| EcoT38I | GRGCYC | 1 cut(s) | 210 |
| ErhI | CCWWGG | 3 cut(s) | 72, 85, 431 |
| FaeI | CATG | 9 cut(s) | 76, 89, 201, 225, 541, 758, 1140, 1221, 1586 |
| FaqI | GGGAC | 3 cut(s) | 130, 289, 1412 |
| FatI | CATG | 9 cut(s) | 72, 85, 197, 221, 537, 754, 1136, 1217, 1582 |
| FbaI | TGATCA | 1 cut(s) | 1576 |
| FblI | GTMKAC | 2 cut(s) | 889, 1233 |
| Fnu4HI | GCNGC | 4 cut(s) | 269, 324, 470, 840 |
| FokI | GGATG | 5 cut(s) | 306, 431, 602, 1154, 1559 |
| FriOI | GRGCYC | 1 cut(s) | 210 |
| Fsp4HI | GCNGC | 4 cut(s) | 269, 324, 470, 840 |
| FspBI | CTAG | 2 cut(s) | 516, 867 |
| GluI | GCNGC | 4 cut(s) | 269, 324, 470, 840 |
| GsuI | CTGGAG | 1 cut(s) | 34 |
| HaeIII | GGCC | 4 cut(s) | 436, 796, 1263, 1551 |
| HapII | CCGG | 2 cut(s) | 272, 1485 |
| Hin1II | CATG | 9 cut(s) | 76, 89, 201, 225, 541, 758, 1140, 1221, 1586 |
| HindIII | AAGCTT | 2 cut(s) | 191, 1266 |
| HinfI | GANTC | 4 cut(s) | 159, 298, 953, 1243 |
| HpaII | CCGG | 2 cut(s) | 272, 1485 |
| HphI | GGTGA | 4 cut(s) | 61, 647, 1463, 1541 |
| Hpy166II | GTNNAC | 2 cut(s) | 890, 1234 |
| Hpy188I | TCNGA | 5 cut(s) | 688, 958, 979, 1105, 1150 |
| Hpy188III | TCNNGA | 3 cut(s) | 33, 185, 1444 |
| Hpy8I | GTNNAC | 2 cut(s) | 890, 1234 |
| HpyCH4V | TGCA | 8 cut(s) | 221, 326, 722, 800, 815, 842, 1049, 1598 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 323 |
| HpyF3I | CTNAG | 5 cut(s) | 138, 186, 411, 1289, 1601 |
| Hsp92II | CATG | 9 cut(s) | 76, 89, 201, 225, 541, 758, 1140, 1221, 1586 |
| Ksp22I | TGATCA | 1 cut(s) | 1576 |
| Kzo9I | GATC | 3 cut(s) | 181, 1145, 1576 |
| LmnI | GCTCC | 1 cut(s) | 1285 |
| Lsp1109I | GCAGC | 4 cut(s) | 255, 310, 456, 826 |
| LweI | GCATC | 3 cut(s) | 96, 304, 310 |
| MaeI | CTAG | 2 cut(s) | 516, 867 |
| MaeIII | GTNAC | 2 cut(s) | 761, 1469 |
| MalI | GATC | 3 cut(s) | 183, 1147, 1578 |
| MboI | GATC | 3 cut(s) | 181, 1145, 1576 |
| MflI | RGATCY | 2 cut(s) | 181, 1145 |
| MhlI | GDGCHC | 2 cut(s) | 210, 1391 |
| MlsI | TGGCCA | 2 cut(s) | 1263, 1551 |
| MluCI | AATT | 8 cut(s) | 51, 227, 442, 505, 600, 1127, 1209, 1413 |
| MluNI | TGGCCA | 2 cut(s) | 1263, 1551 |
| MlyI | GAGTC | 1 cut(s) | 168 |
| MmeI | TCCRAC | 3 cut(s) | 396, 712, 1532 |
| Mox20I | TGGCCA | 2 cut(s) | 1263, 1551 |
| MscI | TGGCCA | 2 cut(s) | 1263, 1551 |
| Msp20I | TGGCCA | 2 cut(s) | 1263, 1551 |
| MspI | CCGG | 2 cut(s) | 272, 1485 |
| MspR9I | CCNGG | 1 cut(s) | 273 |
| Mva1269I | GAATGC | 1 cut(s) | 724 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 323 |
| NciI | CCSGG | 1 cut(s) | 273 |
| NcoI | CCATGG | 2 cut(s) | 72, 85 |
| NdeII | GATC | 3 cut(s) | 181, 1145, 1576 |
| NheI | GCTAGC | 1 cut(s) | 515 |
| NlaIII | CATG | 9 cut(s) | 76, 89, 201, 225, 541, 758, 1140, 1221, 1586 |
| NlaIV | GGNNCC | 3 cut(s) | 183, 1340, 1388 |
| NmuCI | GTSAC | 1 cut(s) | 1469 |
| NspI | RCATGY | 1 cut(s) | 1586 |
| PceI | AGGCCT | 2 cut(s) | 436, 796 |
| PciI | ACATGT | 1 cut(s) | 1582 |
| PctI | GAATGC | 1 cut(s) | 724 |
| PfeI | GAWTC | 3 cut(s) | 298, 953, 1243 |
| PinAI | ACCGGT | 1 cut(s) | 1484 |
| PkrI | GCNGC | 4 cut(s) | 270, 325, 471, 841 |
| PleI | GAGTC | 1 cut(s) | 167 |
| PpsI | GAGTC | 1 cut(s) | 167 |
| PscI | ACATGT | 1 cut(s) | 1582 |
| PshBI | ATTAAT | 1 cut(s) | 603 |
| Psp124BI | GAGCTC | 1 cut(s) | 210 |
| PspN4I | GGNNCC | 3 cut(s) | 183, 1340, 1388 |
| PspPI | GGNCC | 2 cut(s) | 35, 1009 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 958, 990 |
| PstI | CTGCAG | 1 cut(s) | 328 |
| PsuI | RGATCY | 2 cut(s) | 181, 1145 |
| RsaI | GTAC | 1 cut(s) | 65 |
| RsaNI | GTAC | 1 cut(s) | 64 |
| SacI | GAGCTC | 1 cut(s) | 210 |
| SatI | GCNGC | 4 cut(s) | 269, 324, 470, 840 |
| Sau3AI | GATC | 3 cut(s) | 181, 1145, 1576 |
| Sau96I | GGNCC | 2 cut(s) | 35, 1009 |
| ScaI | AGTACT | 1 cut(s) | 65 |
| SchI | GAGTC | 1 cut(s) | 168 |
| ScrFI | CCNGG | 1 cut(s) | 273 |
| SduI | GDGCHC | 2 cut(s) | 210, 1391 |
| SfaNI | GCATC | 3 cut(s) | 96, 304, 310 |
| SfcI | CTRYAG | 1 cut(s) | 324 |
| SinI | GGWCC | 2 cut(s) | 35, 1009 |
| SmlI | CTYRAG | 2 cut(s) | 1237, 1540 |
| SmoI | CTYRAG | 2 cut(s) | 1237, 1540 |
| Sse9I | AATT | 8 cut(s) | 51, 227, 442, 505, 600, 1127, 1209, 1413 |
| SseBI | AGGCCT | 2 cut(s) | 436, 796 |
| SsiI | CCGC | 1 cut(s) | 384 |
| SspI | AATATT | 1 cut(s) | 490 |
| SspMI | CTAG | 2 cut(s) | 516, 867 |
| SstI | GAGCTC | 1 cut(s) | 210 |
| StuI | AGGCCT | 2 cut(s) | 436, 796 |
| StyD4I | CCNGG | 1 cut(s) | 271 |
| StyI | CCWWGG | 3 cut(s) | 72, 85, 431 |
| TaqI | TCGA | 2 cut(s) | 99, 990 |
| TasI | AATT | 8 cut(s) | 51, 227, 442, 505, 600, 1127, 1209, 1413 |
| TatI | WGTACW | 1 cut(s) | 63 |
| TfiI | GAWTC | 3 cut(s) | 298, 953, 1243 |
| TscAI | CASTG | 2 cut(s) | 385, 1126 |
| TseFI | GTSAC | 1 cut(s) | 1469 |
| TseI | GCWGC | 4 cut(s) | 268, 323, 469, 839 |
| Tsp45I | GTSAC | 1 cut(s) | 1469 |
| TspDTI | ATGAA | 8 cut(s) | 714, 753, 759, 771, 1125, 1125, 1140, 1182 |
| TspRI | CASTG | 2 cut(s) | 385, 1126 |
| VpaK11BI | GGWCC | 2 cut(s) | 35, 1009 |
| VspI | ATTAAT | 1 cut(s) | 603 |
| XapI | RAATTY | 1 cut(s) | 51 |
| XceI | RCATGY | 1 cut(s) | 1586 |
| XmiI | GTMKAC | 2 cut(s) | 889, 1233 |
| XspI | CTAG | 2 cut(s) | 516, 867 |
| ZrmI | AGTACT | 1 cut(s) | 65 |