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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 2566, 2593 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 482 |
| AccI | GTMKAC | 2 cut(s) | 588, 2554 |
| AccIII | TCCGGA | 1 cut(s) | 2399 |
| AciI | CCGC | 1 cut(s) | 2657 |
| AclWI | GGATC | 9 cut(s) | 86, 299, 1356, 1583, 1596, 1780, 1793, 1906, 2222 |
| AcoI | YGGCCR | 2 cut(s) | 2305, 2606 |
| AcsI | RAATTY | 2 cut(s) | 866, 2673 |
| AcuI | CTGAAG | 2 cut(s) | 282, 2520 |
| AfaI | GTAC | 3 cut(s) | 219, 1722, 2463 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 482, 898, 899, 1522, 1842, 2126 |
| AflII | CTTAAG | 2 cut(s) | 1667, 2483 |
| AgsI | TTSAA | 8 cut(s) | 568, 1126, 1213, 1483, 1687, 1708, 1961, 2690 |
| AjnI | CCWGG | 1 cut(s) | 1271 |
| AleI | CACNNNNGTG | 1 cut(s) | 813 |
| Alw21I | GWGCWC | 3 cut(s) | 206, 1153, 1851 |
| Alw26I | GTCTC | 2 cut(s) | 1029, 2191 |
| AlwI | GGATC | 9 cut(s) | 86, 299, 1356, 1583, 1596, 1780, 1793, 1906, 2222 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 935 |
| Aor13HI | TCCGGA | 1 cut(s) | 2399 |
| AoxI | GGCC | 4 cut(s) | 1625, 2305, 2606, 2658 |
| ApoI | RAATTY | 2 cut(s) | 866, 2673 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1625, 1657, 1935, 1967 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1326 |
| AspS9I | GGNCC | 9 cut(s) | 131, 420, 1063, 1333, 1380, 1513, 1570, 1907, 2659 |
| AsuC2I | CCSGG | 3 cut(s) | 1375, 1497, 2193 |
| AsuHPI | GGTGA | 5 cut(s) | 248, 374, 404, 727, 1655 |
| AsuII | TTCGAA | 1 cut(s) | 2678 |
| AsuNHI | GCTAGC | 1 cut(s) | 71 |
| AvaII | GGWCC | 8 cut(s) | 131, 420, 1063, 1333, 1380, 1513, 1570, 1907 |
| AxyI | CCTNAGG | 2 cut(s) | 2052, 2450 |
| BalI | TGGCCA | 1 cut(s) | 2307 |
| BamHI | GGATCC | 2 cut(s) | 1588, 1785 |
| BanII | GRGCYC | 2 cut(s) | 206, 1851 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1098, 1130 |
| BauI | CACGAG | 2 cut(s) | 770, 918 |
| BbsI | GAAGAC | 5 cut(s) | 303, 330, 2090, 2549, 2637 |
| Bbv12I | GWGCWC | 3 cut(s) | 206, 1153, 1851 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 734, 768 |
| BciT130I | CCWGG | 1 cut(s) | 1273 |
| BcnI | CCSGG | 3 cut(s) | 1375, 1497, 2193 |
| BcoDI | GTCTC | 2 cut(s) | 1029, 2191 |
| BfaI | CTAG | 9 cut(s) | 72, 158, 213, 759, 819, 998, 1196, 1644, 1893 |
| BfmI | CTRYAG | 1 cut(s) | 1654 |
| BfrI | CTTAAG | 2 cut(s) | 1667, 2483 |
| BfuAI | ACCTGC | 2 cut(s) | 2566, 2593 |
| BglII | AGATCT | 2 cut(s) | 209, 2273 |
| BlpI | GCTNAGC | 2 cut(s) | 873, 1047 |
| Bme1390I | CCNGG | 4 cut(s) | 1273, 1375, 1497, 2193 |
| Bme18I | GGWCC | 8 cut(s) | 131, 420, 1063, 1333, 1380, 1513, 1570, 1907 |
| BmgT120I | GGNCC | 9 cut(s) | 131, 420, 1063, 1333, 1380, 1513, 1570, 1907, 2659 |
| BmiI | GGNNCC | 7 cut(s) | 421, 1065, 1372, 1590, 1787, 2430, 2661 |
| BmrFI | CCNGG | 4 cut(s) | 1273, 1375, 1497, 2193 |
| BmsI | GCATC | 7 cut(s) | 58, 127, 229, 1246, 1797, 2010, 2534 |
| BmtI | GCTAGC | 1 cut(s) | 75 |
| BpiI | GAAGAC | 5 cut(s) | 303, 330, 2090, 2549, 2637 |
| BpmI | CTGGAG | 1 cut(s) | 190 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 873, 1047 |
| Bpu14I | TTCGAA | 1 cut(s) | 2678 |
| BpuEI | CTTGAG | 3 cut(s) | 51, 2264, 2580 |
| BpuMI | CCSGG | 3 cut(s) | 1375, 1497, 2193 |
| BsaAI | YACGTR | 1 cut(s) | 1948 |
| BsaI | GGTCTC | 1 cut(s) | 2191 |
| BsaJI | CCNNGG | 4 cut(s) | 1272, 1841, 2192, 2603 |
| BsaWI | WCCGGW | 1 cut(s) | 2399 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 482, 898, 899, 1522, 1842, 2126 |
| Bse1I | ACTGG | 4 cut(s) | 1590, 1643, 2002, 2364 |
| Bse21I | CCTNAGG | 2 cut(s) | 2052, 2450 |
| Bse3DI | GCAATG | 2 cut(s) | 930, 2068 |
| BseAI | TCCGGA | 1 cut(s) | 2399 |
| BseBI | CCWGG | 1 cut(s) | 1273 |
| BseDI | CCNNGG | 4 cut(s) | 1272, 1841, 2192, 2603 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 482, 898, 899, 1522, 1842, 2126 |
| BseMI | GCAATG | 2 cut(s) | 930, 2068 |
| BseMII | CTCAG | 9 cut(s) | 300, 543, 864, 971, 1038, 2043, 2220, 2420, 2441 |
| BseNI | ACTGG | 4 cut(s) | 1590, 1643, 2002, 2364 |
| BseRI | GAGGAG | 5 cut(s) | 420, 1795, 1810, 2592, 2616 |
| BseYI | CCCAGC | 1 cut(s) | 1317 |
| BsgI | GTGCAG | 2 cut(s) | 2244, 2288 |
| BshFI | GGCC | 4 cut(s) | 1627, 2307, 2608, 2660 |
| BsiHKAI | GWGCWC | 3 cut(s) | 206, 1153, 1851 |
| BsiSI | CCGG | 4 cut(s) | 1374, 1496, 2192, 2400 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 482, 898, 899, 1522, 1842, 2126 |
| BsmAI | GTCTC | 2 cut(s) | 1029, 2191 |
| BsmI | GAATGC | 3 cut(s) | 512, 768, 1887 |
| BsnI | GGCC | 4 cut(s) | 1627, 2307, 2608, 2660 |
| Bso31I | GGTCTC | 1 cut(s) | 2191 |
| Bsp119I | TTCGAA | 1 cut(s) | 2678 |
| Bsp1286I | GDGCHC | 3 cut(s) | 206, 1153, 1851 |
| Bsp13I | TCCGGA | 1 cut(s) | 2399 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 873, 1047 |
| BspACI | CCGC | 1 cut(s) | 2657 |
| BspANI | GGCC | 4 cut(s) | 1627, 2307, 2608, 2660 |
| BspCNI | CTCAG | 9 cut(s) | 301, 542, 865, 970, 1039, 2044, 2221, 2419, 2442 |
| BspEI | TCCGGA | 1 cut(s) | 2399 |
| BspHI | TCATGA | 2 cut(s) | 1776, 2296 |
| BspLI | GGNNCC | 7 cut(s) | 421, 1065, 1372, 1590, 1787, 2430, 2661 |
| BspMI | ACCTGC | 2 cut(s) | 2566, 2593 |
| BspOI | GCTAGC | 1 cut(s) | 75 |
| BspPI | GGATC | 9 cut(s) | 86, 299, 1356, 1583, 1596, 1780, 1793, 1906, 2222 |
| BspQI | GCTCTTC | 2 cut(s) | 1101, 1208 |
| BspT104I | TTCGAA | 1 cut(s) | 2678 |
| BspTI | CTTAAG | 2 cut(s) | 1667, 2483 |
| BspTNI | GGTCTC | 1 cut(s) | 2191 |
| BsrDI | GCAATG | 2 cut(s) | 930, 2068 |
| BsrI | ACTGG | 4 cut(s) | 1590, 1643, 2002, 2364 |
| BssECI | CCNNGG | 4 cut(s) | 1272, 1841, 2192, 2603 |
| BssSI | CACGAG | 2 cut(s) | 770, 918 |
| Bst2BI | CACGAG | 2 cut(s) | 770, 918 |
| Bst2UI | CCWGG | 1 cut(s) | 1273 |
| Bst4CI | ACNGT | 4 cut(s) | 58, 284, 937, 2294 |
| Bst6I | CTCTTC | 5 cut(s) | 222, 686, 1101, 1208, 2369 |
| BstAFI | CTTAAG | 2 cut(s) | 1667, 2483 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2531 |
| BstBAI | YACGTR | 1 cut(s) | 1948 |
| BstBI | TTCGAA | 1 cut(s) | 2678 |
| BstC8I | GCNNGC | 5 cut(s) | 73, 963, 1978, 2046, 2655 |
| BstMAI | GTCTC | 2 cut(s) | 1029, 2191 |
| BstNI | CCWGG | 1 cut(s) | 1273 |
| BstNSI | RCATGY | 3 cut(s) | 1530, 1980, 2018 |
| BstSCI | CCNGG | 4 cut(s) | 1271, 1373, 1495, 2191 |
| BstSFI | CTRYAG | 1 cut(s) | 1654 |
| BstV2I | GAAGAC | 5 cut(s) | 303, 330, 2090, 2549, 2637 |
| BstX2I | RGATCY | 5 cut(s) | 209, 1348, 1588, 1785, 2273 |
| BstYI | RGATCY | 5 cut(s) | 209, 1348, 1588, 1785, 2273 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2052, 2450 |
| BsuRI | GGCC | 4 cut(s) | 1627, 2307, 2608, 2660 |
| BtsIMutI | CAGTG | 3 cut(s) | 933, 1636, 2371 |
| BveI | ACCTGC | 2 cut(s) | 2566, 2593 |
| Cac8I | GCNNGC | 5 cut(s) | 73, 963, 1978, 2046, 2655 |
| CaiI | CAGNNNCTG | 1 cut(s) | 935 |
| CciI | TCATGA | 2 cut(s) | 1776, 2296 |
| Cfr13I | GGNCC | 9 cut(s) | 131, 420, 1063, 1333, 1380, 1513, 1570, 1907, 2659 |
| Csp6I | GTAC | 3 cut(s) | 218, 1721, 2462 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 130, 165 |
| CviQI | GTAC | 3 cut(s) | 218, 1721, 2462 |
| EaeI | YGGCCR | 2 cut(s) | 2305, 2606 |
| Eam1104I | CTCTTC | 5 cut(s) | 222, 686, 1101, 1208, 2369 |
| EarI | CTCTTC | 5 cut(s) | 222, 686, 1101, 1208, 2369 |
| Ecl136II | GAGCTC | 2 cut(s) | 204, 1849 |
| Eco24I | GRGCYC | 2 cut(s) | 206, 1851 |
| Eco31I | GGTCTC | 1 cut(s) | 2191 |
| Eco47I | GGWCC | 8 cut(s) | 131, 420, 1063, 1333, 1380, 1513, 1570, 1907 |
| Eco53kI | GAGCTC | 2 cut(s) | 204, 1849 |
| Eco57I | CTGAAG | 2 cut(s) | 282, 2520 |
| Eco81I | CCTNAGG | 2 cut(s) | 2052, 2450 |
| EcoICRI | GAGCTC | 2 cut(s) | 204, 1849 |
| EcoO109I | RGGNCCY | 1 cut(s) | 131 |
| EcoRII | CCWGG | 1 cut(s) | 1271 |
| EcoT22I | ATGCAT | 1 cut(s) | 512 |
| EcoT38I | GRGCYC | 2 cut(s) | 206, 1851 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 971, 1003, 1079, 1111 |
| FauNDI | CATATG | 3 cut(s) | 1285, 1600, 1791 |
| FblI | GTMKAC | 2 cut(s) | 588, 2554 |
| FriOI | GRGCYC | 2 cut(s) | 206, 1851 |
| FspBI | CTAG | 9 cut(s) | 72, 158, 213, 759, 819, 998, 1196, 1644, 1893 |
| GsaI | CCCAGC | 1 cut(s) | 1321 |
| GsuI | CTGGAG | 1 cut(s) | 190 |
| HaeIII | GGCC | 4 cut(s) | 1627, 2307, 2608, 2660 |
| HapII | CCGG | 4 cut(s) | 1374, 1496, 2192, 2400 |
| HincII | GTYRAC | 4 cut(s) | 589, 954, 1539, 1954 |
| HindII | GTYRAC | 4 cut(s) | 589, 954, 1539, 1954 |
| HindIII | AAGCTT | 2 cut(s) | 2255, 2480 |
| HinfI | GANTC | 7 cut(s) | 248, 257, 494, 527, 555, 908, 2390 |
| HpaII | CCGG | 4 cut(s) | 1374, 1496, 2192, 2400 |
| HphI | GGTGA | 5 cut(s) | 248, 374, 404, 727, 1655 |
| Hpy188I | TCNGA | 9 cut(s) | 262, 289, 499, 532, 666, 1169, 1393, 1699, 2409 |
| HpyCH4III | ACNGT | 4 cut(s) | 58, 284, 937, 2294 |
| HpyCH4IV | ACGT | 1 cut(s) | 1947 |
| HpySE526I | ACGT | 1 cut(s) | 1947 |
| Kpn2I | TCCGGA | 1 cut(s) | 2399 |
| LguI | GCTCTTC | 2 cut(s) | 1101, 1208 |
| LmnI | GCTCC | 9 cut(s) | 201, 209, 485, 1148, 1370, 1846, 2428, 2593, 2605 |
| LweI | GCATC | 7 cut(s) | 58, 127, 229, 1246, 1797, 2010, 2534 |
| MaeI | CTAG | 9 cut(s) | 72, 158, 213, 759, 819, 998, 1196, 1644, 1893 |
| MaeII | ACGT | 1 cut(s) | 1947 |
| MaeIII | GTNAC | 6 cut(s) | 362, 695, 1091, 1410, 1673, 2366 |
| MfeI | CAATTG | 1 cut(s) | 1740 |
| MflI | RGATCY | 5 cut(s) | 209, 1348, 1588, 1785, 2273 |
| MhlI | GDGCHC | 3 cut(s) | 206, 1153, 1851 |
| MlsI | TGGCCA | 1 cut(s) | 2307 |
| MluNI | TGGCCA | 1 cut(s) | 2307 |
| MlyI | GAGTC | 1 cut(s) | 521 |
| MmeI | TCCRAC | 2 cut(s) | 21, 77 |
| Mox20I | TGGCCA | 1 cut(s) | 2307 |
| Mph1103I | ATGCAT | 1 cut(s) | 512 |
| MroI | TCCGGA | 1 cut(s) | 2399 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1326 |
| MscI | TGGCCA | 1 cut(s) | 2307 |
| MslI | CAYNNNNRTG | 1 cut(s) | 813 |
| Msp20I | TGGCCA | 1 cut(s) | 2307 |
| MspA1I | CMGCKG | 2 cut(s) | 1046, 2228 |
| MspCI | CTTAAG | 2 cut(s) | 1667, 2483 |
| MspI | CCGG | 4 cut(s) | 1374, 1496, 2192, 2400 |
| MspR9I | CCNGG | 4 cut(s) | 1273, 1375, 1497, 2193 |
| MunI | CAATTG | 1 cut(s) | 1740 |
| Mva1269I | GAATGC | 3 cut(s) | 512, 768, 1887 |
| MvaI | CCWGG | 1 cut(s) | 1273 |
| NciI | CCSGG | 3 cut(s) | 1375, 1497, 2193 |
| NdeI | CATATG | 3 cut(s) | 1285, 1600, 1791 |
| NheI | GCTAGC | 1 cut(s) | 71 |
| NlaIV | GGNNCC | 7 cut(s) | 421, 1065, 1372, 1590, 1787, 2430, 2661 |
| NmeAIII | GCCGAG | 1 cut(s) | 2584 |
| NmuCI | GTSAC | 5 cut(s) | 362, 695, 1091, 1673, 2366 |
| NsiI | ATGCAT | 1 cut(s) | 512 |
| NspI | RCATGY | 3 cut(s) | 1530, 1980, 2018 |
| NspV | TTCGAA | 1 cut(s) | 2678 |
| OliI | CACNNNNGTG | 1 cut(s) | 813 |
| PaeI | GCATGC | 1 cut(s) | 1980 |
| PagI | TCATGA | 2 cut(s) | 1776, 2296 |
| PciSI | GCTCTTC | 2 cut(s) | 1101, 1208 |
| PctI | GAATGC | 3 cut(s) | 512, 768, 1887 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1326 |
| PfeI | GAWTC | 6 cut(s) | 248, 257, 494, 555, 908, 2390 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 482 |
| PleI | GAGTC | 1 cut(s) | 521 |
| PpsI | GAGTC | 1 cut(s) | 521 |
| Ppu21I | YACGTR | 1 cut(s) | 1948 |
| PpuMI | RGGWCCY | 1 cut(s) | 131 |
| Psp124BI | GAGCTC | 2 cut(s) | 206, 1851 |
| Psp5II | RGGWCCY | 1 cut(s) | 131 |
| Psp6I | CCWGG | 1 cut(s) | 1271 |
| PspFI | CCCAGC | 1 cut(s) | 1317 |
| PspGI | CCWGG | 1 cut(s) | 1271 |
| PspN4I | GGNNCC | 7 cut(s) | 421, 1065, 1372, 1590, 1787, 2430, 2661 |
| PspPI | GGNCC | 9 cut(s) | 131, 420, 1063, 1333, 1380, 1513, 1570, 1907, 2659 |
| PspPPI | RGGWCCY | 1 cut(s) | 131 |
| PstNI | CAGNNNCTG | 1 cut(s) | 935 |
| PsuI | RGATCY | 5 cut(s) | 209, 1348, 1588, 1785, 2273 |
| PvuII | CAGCTG | 2 cut(s) | 1046, 2228 |
| RsaI | GTAC | 3 cut(s) | 219, 1722, 2463 |
| RsaNI | GTAC | 3 cut(s) | 218, 1721, 2462 |
| RseI | CAYNNNNRTG | 1 cut(s) | 813 |
| SacI | GAGCTC | 2 cut(s) | 206, 1851 |
| SalI | GTCGAC | 1 cut(s) | 587 |
| SapI | GCTCTTC | 2 cut(s) | 1101, 1208 |
| Sau96I | GGNCC | 9 cut(s) | 131, 420, 1063, 1333, 1380, 1513, 1570, 1907, 2659 |
| SchI | GAGTC | 1 cut(s) | 521 |
| ScrFI | CCNGG | 4 cut(s) | 1273, 1375, 1497, 2193 |
| SduI | GDGCHC | 3 cut(s) | 206, 1153, 1851 |
| SfaNI | GCATC | 7 cut(s) | 58, 127, 229, 1246, 1797, 2010, 2534 |
| SfcI | CTRYAG | 1 cut(s) | 1654 |
| SfuI | TTCGAA | 1 cut(s) | 2678 |
| SinI | GGWCC | 8 cut(s) | 131, 420, 1063, 1333, 1380, 1513, 1570, 1907 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 813 |
| SmlI | CTYRAG | 5 cut(s) | 66, 1667, 2279, 2483, 2595 |
| SmoI | CTYRAG | 5 cut(s) | 66, 1667, 2279, 2483, 2595 |
| SphI | GCATGC | 1 cut(s) | 1980 |
| SsiI | CCGC | 1 cut(s) | 2657 |
| SspMI | CTAG | 9 cut(s) | 72, 158, 213, 759, 819, 998, 1196, 1644, 1893 |
| SstI | GAGCTC | 2 cut(s) | 206, 1851 |
| StyD4I | CCNGG | 4 cut(s) | 1271, 1373, 1495, 2191 |
| TaaI | ACNGT | 4 cut(s) | 58, 284, 937, 2294 |
| TaiI | ACGT | 1 cut(s) | 1950 |
| TaqI | TCGA | 5 cut(s) | 588, 744, 1462, 1631, 2678 |
| TauI | GCSGC | 1 cut(s) | 2660 |
| TfiI | GAWTC | 6 cut(s) | 248, 257, 494, 555, 908, 2390 |
| TscAI | CASTG | 3 cut(s) | 940, 1643, 2371 |
| TseFI | GTSAC | 5 cut(s) | 362, 695, 1091, 1673, 2366 |
| Tsp45I | GTSAC | 5 cut(s) | 362, 695, 1091, 1673, 2366 |
| TspRI | CASTG | 3 cut(s) | 940, 1643, 2371 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 482 |
| Vha464I | CTTAAG | 2 cut(s) | 1667, 2483 |
| VpaK11BI | GGWCC | 8 cut(s) | 131, 420, 1063, 1333, 1380, 1513, 1570, 1907 |
| XapI | RAATTY | 2 cut(s) | 866, 2673 |
| XbaI | TCTAGA | 2 cut(s) | 758, 997 |
| XceI | RCATGY | 3 cut(s) | 1530, 1980, 2018 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1635 |
| XmiI | GTMKAC | 2 cut(s) | 588, 2554 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1326 |
| XspI | CTAG | 9 cut(s) | 72, 158, 213, 759, 819, 998, 1196, 1644, 1893 |
| Zsp2I | ATGCAT | 1 cut(s) | 512 |