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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2091 |
| Acc36I | ACCTGC | 1 cut(s) | 1912 |
| AccIII | TCCGGA | 1 cut(s) | 1291 |
| AciI | CCGC | 1 cut(s) | 747 |
| AclWI | GGATC | 4 cut(s) | 735, 812, 1547, 1845 |
| AcsI | RAATTY | 5 cut(s) | 16, 1052, 1251, 1518, 1935 |
| AcuI | CTGAAG | 3 cut(s) | 483, 945, 1404 |
| AfaI | GTAC | 6 cut(s) | 11, 330, 711, 979, 1343, 1693 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 476, 554, 1910 |
| AflIII | ACRYGT | 1 cut(s) | 892 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1919 |
| AjnI | CCWGG | 1 cut(s) | 1984 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 459, 491 |
| AleI | CACNNNNGTG | 1 cut(s) | 2153 |
| Alw21I | GWGCWC | 2 cut(s) | 1642, 1854 |
| Alw26I | GTCTC | 2 cut(s) | 27, 1181 |
| AlwI | GGATC | 4 cut(s) | 735, 812, 1547, 1845 |
| Aor13HI | TCCGGA | 1 cut(s) | 1291 |
| AoxI | GGCC | 2 cut(s) | 1717, 2114 |
| ApeKI | GCWGC | 5 cut(s) | 289, 373, 1472, 1599, 2363 |
| ApoI | RAATTY | 5 cut(s) | 16, 1052, 1251, 1518, 1935 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1652 |
| AspS9I | GGNCC | 3 cut(s) | 557, 1717, 1962 |
| AsuHPI | GGTGA | 7 cut(s) | 16, 217, 287, 896, 2220, 2269, 2408 |
| AvaII | GGWCC | 2 cut(s) | 557, 1962 |
| AxyI | CCTNAGG | 1 cut(s) | 549 |
| BanII | GRGCYC | 1 cut(s) | 1642 |
| Bbv12I | GWGCWC | 2 cut(s) | 1642, 1854 |
| BbvI | GCAGC | 5 cut(s) | 276, 360, 1459, 1611, 2350 |
| BccI | CCATC | 6 cut(s) | 47, 266, 1019, 1407, 1682, 1860 |
| BceAI | ACGGC | 1 cut(s) | 2215 |
| BciT130I | CCWGG | 1 cut(s) | 1986 |
| BciVI | GTATCC | 1 cut(s) | 1258 |
| BcoDI | GTCTC | 2 cut(s) | 27, 1181 |
| BfaI | CTAG | 9 cut(s) | 77, 444, 471, 651, 704, 1179, 1308, 1403, 1407 |
| BfuAI | ACCTGC | 1 cut(s) | 1912 |
| BfuI | GTATCC | 1 cut(s) | 1258 |
| BisI | GCNGC | 5 cut(s) | 290, 374, 1473, 1600, 2364 |
| BlpI | GCTNAGC | 1 cut(s) | 588 |
| BlsI | GCNGC | 5 cut(s) | 291, 375, 1474, 1601, 2365 |
| BmcAI | AGTACT | 1 cut(s) | 979 |
| Bme1390I | CCNGG | 1 cut(s) | 1986 |
| Bme18I | GGWCC | 2 cut(s) | 557, 1962 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1919 |
| BmgT120I | GGNCC | 3 cut(s) | 557, 1717, 1962 |
| BmiI | GGNNCC | 2 cut(s) | 27, 1718 |
| BmrFI | CCNGG | 1 cut(s) | 1986 |
| BmsI | GCATC | 4 cut(s) | 397, 856, 1735, 2074 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1464 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 588 |
| BpuEI | CTTGAG | 2 cut(s) | 513, 1628 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1874 |
| BsaWI | WCCGGW | 1 cut(s) | 1291 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 476, 554, 1910 |
| Bse1I | ACTGG | 5 cut(s) | 364, 847, 1391, 1607, 2231 |
| Bse21I | CCTNAGG | 1 cut(s) | 549 |
| Bse3DI | GCAATG | 4 cut(s) | 1117, 1419, 1785, 2400 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1874 |
| BseAI | TCCGGA | 1 cut(s) | 1291 |
| BseBI | CCWGG | 1 cut(s) | 1986 |
| BseGI | GGATG | 7 cut(s) | 310, 671, 700, 796, 805, 1750, 1871 |
| BseJI | GATNNNNATC | 1 cut(s) | 1874 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 476, 554, 1910 |
| BseMI | GCAATG | 4 cut(s) | 1117, 1419, 1785, 2400 |
| BseMII | CTCAG | 6 cut(s) | 206, 248, 563, 579, 1782, 2397 |
| BseNI | ACTGG | 5 cut(s) | 364, 847, 1391, 1607, 2231 |
| BseRI | GAGGAG | 4 cut(s) | 800, 809, 977, 1010 |
| BseXI | GCAGC | 5 cut(s) | 276, 360, 1459, 1611, 2350 |
| BsgI | GTGCAG | 5 cut(s) | 359, 1458, 1890, 2152, 2359 |
| BshFI | GGCC | 2 cut(s) | 1719, 2116 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1642, 1854 |
| BsiSI | CCGG | 1 cut(s) | 1292 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 476, 554, 1910 |
| BsmAI | GTCTC | 2 cut(s) | 27, 1181 |
| BsmBI | CGTCTC | 1 cut(s) | 27 |
| BsmI | GAATGC | 1 cut(s) | 910 |
| BsnI | GGCC | 2 cut(s) | 1719, 2116 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1642, 1854 |
| Bsp13I | TCCGGA | 1 cut(s) | 1291 |
| Bsp1407I | TGTACA | 1 cut(s) | 709 |
| Bsp143I | GATC | 6 cut(s) | 697, 727, 817, 1552, 1837, 2002 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 588 |
| BspACI | CCGC | 1 cut(s) | 747 |
| BspANI | GGCC | 2 cut(s) | 1719, 2116 |
| BspCNI | CTCAG | 6 cut(s) | 207, 247, 562, 580, 1783, 2398 |
| BspEI | TCCGGA | 1 cut(s) | 1291 |
| BspHI | TCATGA | 1 cut(s) | 2169 |
| BspLI | GGNNCC | 2 cut(s) | 27, 1718 |
| BspMI | ACCTGC | 1 cut(s) | 1912 |
| BspPI | GGATC | 4 cut(s) | 735, 812, 1547, 1845 |
| BsrDI | GCAATG | 4 cut(s) | 1117, 1419, 1785, 2400 |
| BsrGI | TGTACA | 1 cut(s) | 709 |
| BsrI | ACTGG | 5 cut(s) | 364, 847, 1391, 1607, 2231 |
| BssMI | GATC | 6 cut(s) | 697, 727, 817, 1552, 1837, 2002 |
| Bst2UI | CCWGG | 1 cut(s) | 1986 |
| Bst4CI | ACNGT | 5 cut(s) | 91, 164, 520, 982, 2152 |
| Bst6I | CTCTTC | 4 cut(s) | 939, 1855, 2241, 2264 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 520 |
| BstAUI | TGTACA | 1 cut(s) | 709 |
| BstC8I | GCNNGC | 4 cut(s) | 535, 681, 1146, 2118 |
| BstDEI | CTNAG | 8 cut(s) | 215, 234, 549, 588, 1124, 1464, 1791, 2406 |
| BstF5I | GGATG | 7 cut(s) | 310, 671, 700, 796, 805, 1750, 1871 |
| BstKTI | GATC | 6 cut(s) | 700, 730, 820, 1555, 1840, 2005 |
| BstMAI | GTCTC | 2 cut(s) | 27, 1181 |
| BstMBI | GATC | 6 cut(s) | 697, 727, 817, 1552, 1837, 2002 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 520, 1332, 1460, 1469, 2199 |
| BstNI | CCWGG | 1 cut(s) | 1986 |
| BstNSI | RCATGY | 5 cut(s) | 896, 1148, 1624, 2463, 2469 |
| BstSCI | CCNGG | 1 cut(s) | 1984 |
| BstV1I | GCAGC | 5 cut(s) | 276, 360, 1459, 1611, 2350 |
| BstX2I | RGATCY | 1 cut(s) | 1837 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 21 |
| BstYI | RGATCY | 1 cut(s) | 1837 |
| Bsu36I | CCTNAGG | 1 cut(s) | 549 |
| BsuI | GTATCC | 1 cut(s) | 1258 |
| BsuRI | GGCC | 2 cut(s) | 1719, 2116 |
| BtsCI | GGATG | 7 cut(s) | 310, 671, 700, 796, 805, 1750, 1871 |
| BtsIMutI | CAGTG | 2 cut(s) | 160, 1885 |
| BveI | ACCTGC | 1 cut(s) | 1912 |
| Cac8I | GCNNGC | 4 cut(s) | 535, 681, 1146, 2118 |
| CciI | TCATGA | 1 cut(s) | 2169 |
| Cfr13I | GGNCC | 3 cut(s) | 557, 1717, 1962 |
| Csp6I | GTAC | 6 cut(s) | 10, 329, 710, 978, 1342, 1692 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1549, 1584, 2418, 2453 |
| CviQI | GTAC | 6 cut(s) | 10, 329, 710, 978, 1342, 1692 |
| DdeI | CTNAG | 8 cut(s) | 215, 234, 549, 588, 1124, 1464, 1791, 2406 |
| DpnI | GATC | 6 cut(s) | 699, 729, 819, 1554, 1839, 2004 |
| DpnII | GATC | 6 cut(s) | 697, 727, 817, 1552, 1837, 2002 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1919 |
| Eam1104I | CTCTTC | 4 cut(s) | 939, 1855, 2241, 2264 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1919 |
| EarI | CTCTTC | 4 cut(s) | 939, 1855, 2241, 2264 |
| Ecl136II | GAGCTC | 1 cut(s) | 1640 |
| Eco147I | AGGCCT | 1 cut(s) | 2116 |
| Eco24I | GRGCYC | 1 cut(s) | 1642 |
| Eco32I | GATATC | 1 cut(s) | 2167 |
| Eco47I | GGWCC | 2 cut(s) | 557, 1962 |
| Eco53kI | GAGCTC | 1 cut(s) | 1640 |
| Eco57I | CTGAAG | 3 cut(s) | 483, 945, 1404 |
| Eco81I | CCTNAGG | 1 cut(s) | 549 |
| EcoICRI | GAGCTC | 1 cut(s) | 1640 |
| EcoRI | GAATTC | 2 cut(s) | 1052, 1518 |
| EcoRII | CCWGG | 1 cut(s) | 1984 |
| EcoRV | GATATC | 1 cut(s) | 2167 |
| EcoT38I | GRGCYC | 1 cut(s) | 1642 |
| Esp3I | CGTCTC | 1 cut(s) | 27 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1328, 1360 |
| FauI | CCCGC | 1 cut(s) | 740 |
| FauNDI | CATATG | 6 cut(s) | 130, 315, 742, 1301, 1762, 2183 |
| Fnu4HI | GCNGC | 5 cut(s) | 290, 374, 1473, 1600, 2364 |
| FokI | GGATG | 7 cut(s) | 317, 678, 707, 803, 812, 1757, 1878 |
| FriOI | GRGCYC | 1 cut(s) | 1642 |
| Fsp4HI | GCNGC | 5 cut(s) | 290, 374, 1473, 1600, 2364 |
| FspBI | CTAG | 9 cut(s) | 77, 444, 471, 651, 704, 1179, 1308, 1403, 1407 |
| GluI | GCNGC | 5 cut(s) | 290, 374, 1473, 1600, 2364 |
| HaeIII | GGCC | 2 cut(s) | 1719, 2116 |
| HapII | CCGG | 1 cut(s) | 1292 |
| HincII | GTYRAC | 1 cut(s) | 2028 |
| HindII | GTYRAC | 1 cut(s) | 2028 |
| HindIII | AAGCTT | 2 cut(s) | 1131, 2301 |
| HinfI | GANTC | 4 cut(s) | 217, 1078, 1802, 2274 |
| HpaII | CCGG | 1 cut(s) | 1292 |
| HphI | GGTGA | 7 cut(s) | 16, 217, 287, 896, 2220, 2269, 2408 |
| Hpy166II | GTNNAC | 3 cut(s) | 622, 1449, 2028 |
| Hpy188I | TCNGA | 6 cut(s) | 1024, 1101, 1423, 1899, 2007, 2049 |
| Hpy188III | TCNNGA | 7 cut(s) | 461, 704, 1256, 1292, 1523, 1645, 2170 |
| Hpy8I | GTNNAC | 3 cut(s) | 622, 1449, 2028 |
| HpyCH4III | ACNGT | 5 cut(s) | 91, 164, 520, 982, 2152 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 520, 1332, 1460, 1469, 2199 |
| HpyF3I | CTNAG | 8 cut(s) | 215, 234, 549, 588, 1124, 1464, 1791, 2406 |
| Kpn2I | TCCGGA | 1 cut(s) | 1291 |
| Kzo9I | GATC | 6 cut(s) | 697, 727, 817, 1552, 1837, 2002 |
| LmnI | GCTCC | 4 cut(s) | 370, 1141, 1504, 1637 |
| Lsp1109I | GCAGC | 5 cut(s) | 276, 360, 1459, 1611, 2350 |
| LweI | GCATC | 4 cut(s) | 397, 856, 1735, 2074 |
| MaeI | CTAG | 9 cut(s) | 77, 444, 471, 651, 704, 1179, 1308, 1403, 1407 |
| MaeIII | GTNAC | 6 cut(s) | 164, 359, 1880, 2226, 2233, 2396 |
| MalI | GATC | 6 cut(s) | 699, 729, 819, 1554, 1839, 2004 |
| MboI | GATC | 6 cut(s) | 697, 727, 817, 1552, 1837, 2002 |
| MfeI | CAATTG | 2 cut(s) | 1321, 1566 |
| MflI | RGATCY | 1 cut(s) | 1837 |
| MhlI | GDGCHC | 2 cut(s) | 1642, 1854 |
| MlyI | GAGTC | 1 cut(s) | 226 |
| MmeI | TCCRAC | 4 cut(s) | 348, 845, 1106, 1119 |
| MroI | TCCGGA | 1 cut(s) | 1291 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1652 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1161, 2153, 2464 |
| MspA1I | CMGCKG | 1 cut(s) | 214 |
| MspI | CCGG | 1 cut(s) | 1292 |
| MspR9I | CCNGG | 1 cut(s) | 1986 |
| MunI | CAATTG | 2 cut(s) | 1321, 1566 |
| Mva1269I | GAATGC | 1 cut(s) | 910 |
| MvaI | CCWGG | 1 cut(s) | 1986 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 520, 1332, 1460, 1469, 2199 |
| NdeI | CATATG | 6 cut(s) | 130, 315, 742, 1301, 1762, 2183 |
| NdeII | GATC | 6 cut(s) | 697, 727, 817, 1552, 1837, 2002 |
| NlaIV | GGNNCC | 2 cut(s) | 27, 1718 |
| NmuCI | GTSAC | 5 cut(s) | 164, 359, 1880, 2226, 2396 |
| NspI | RCATGY | 5 cut(s) | 896, 1148, 1624, 2463, 2469 |
| OliI | CACNNNNGTG | 1 cut(s) | 2153 |
| PaeI | GCATGC | 1 cut(s) | 1148 |
| PagI | TCATGA | 1 cut(s) | 2169 |
| PceI | AGGCCT | 1 cut(s) | 2116 |
| PciI | ACATGT | 1 cut(s) | 892 |
| PctI | GAATGC | 1 cut(s) | 910 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1652 |
| PfeI | GAWTC | 3 cut(s) | 1078, 1802, 2274 |
| PfoI | TCCNGGA | 1 cut(s) | 1984 |
| PkrI | GCNGC | 5 cut(s) | 291, 375, 1474, 1601, 2365 |
| PleI | GAGTC | 1 cut(s) | 225 |
| PpsI | GAGTC | 1 cut(s) | 225 |
| PscI | ACATGT | 1 cut(s) | 892 |
| PsiI | TTATAA | 1 cut(s) | 2091 |
| Psp124BI | GAGCTC | 1 cut(s) | 1642 |
| Psp6I | CCWGG | 1 cut(s) | 1984 |
| PspGI | CCWGG | 1 cut(s) | 1984 |
| PspN4I | GGNNCC | 2 cut(s) | 27, 1718 |
| PspPI | GGNCC | 3 cut(s) | 557, 1717, 1962 |
| PsuI | RGATCY | 1 cut(s) | 1837 |
| PvuII | CAGCTG | 1 cut(s) | 214 |
| RsaI | GTAC | 6 cut(s) | 11, 330, 711, 979, 1343, 1693 |
| RsaNI | GTAC | 6 cut(s) | 10, 329, 710, 978, 1342, 1692 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1161, 2153, 2464 |
| SacI | GAGCTC | 1 cut(s) | 1642 |
| SatI | GCNGC | 5 cut(s) | 290, 374, 1473, 1600, 2364 |
| Sau3AI | GATC | 6 cut(s) | 697, 727, 817, 1552, 1837, 2002 |
| Sau96I | GGNCC | 3 cut(s) | 557, 1717, 1962 |
| ScaI | AGTACT | 1 cut(s) | 979 |
| SchI | GAGTC | 1 cut(s) | 226 |
| ScrFI | CCNGG | 1 cut(s) | 1986 |
| SduI | GDGCHC | 2 cut(s) | 1642, 1854 |
| SfaNI | GCATC | 4 cut(s) | 397, 856, 1735, 2074 |
| SinI | GGWCC | 2 cut(s) | 557, 1962 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1161, 2153, 2464 |
| SmlI | CTYRAG | 2 cut(s) | 528, 1643 |
| SmoI | CTYRAG | 2 cut(s) | 528, 1643 |
| SphI | GCATGC | 1 cut(s) | 1148 |
| SseBI | AGGCCT | 1 cut(s) | 2116 |
| SsiI | CCGC | 1 cut(s) | 747 |
| SspI | AATATT | 2 cut(s) | 1169, 2317 |
| SspMI | CTAG | 9 cut(s) | 77, 444, 471, 651, 704, 1179, 1308, 1403, 1407 |
| SstI | GAGCTC | 1 cut(s) | 1642 |
| StuI | AGGCCT | 1 cut(s) | 2116 |
| StyD4I | CCNGG | 1 cut(s) | 1984 |
| TaaI | ACNGT | 5 cut(s) | 91, 164, 520, 982, 2152 |
| TaqI | TCGA | 1 cut(s) | 1939 |
| TatI | WGTACW | 2 cut(s) | 709, 977 |
| TfiI | GAWTC | 3 cut(s) | 1078, 1802, 2274 |
| TscAI | CASTG | 2 cut(s) | 167, 1885 |
| TseFI | GTSAC | 5 cut(s) | 164, 359, 1880, 2226, 2396 |
| TseI | GCWGC | 5 cut(s) | 289, 373, 1472, 1599, 2363 |
| Tsp45I | GTSAC | 5 cut(s) | 164, 359, 1880, 2226, 2396 |
| TspRI | CASTG | 2 cut(s) | 167, 1885 |
| VpaK11BI | GGWCC | 2 cut(s) | 557, 1962 |
| XapI | RAATTY | 5 cut(s) | 16, 1052, 1251, 1518, 1935 |
| XbaI | TCTAGA | 1 cut(s) | 703 |
| XceI | RCATGY | 5 cut(s) | 896, 1148, 1624, 2463, 2469 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1652 |
| XspI | CTAG | 9 cut(s) | 77, 444, 471, 651, 704, 1179, 1308, 1403, 1407 |
| ZrmI | AGTACT | 1 cut(s) | 979 |